Wall clock time and date at job start Tue Mar 31 2020 16:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.28055 * 124.24539 * 2 1 4 4 C 1.34413 * 117.91703 * 179.97438 * 3 2 1 5 5 C 1.41246 * 129.48127 * 179.97438 * 4 3 2 6 6 C 1.35745 * 120.64052 * 180.02562 * 5 4 3 7 7 C 1.40204 * 120.60967 * 359.97438 * 6 5 4 8 8 C 1.47590 * 120.12256 * 180.02562 * 7 6 5 9 9 O 1.21586 * 119.99859 * 179.97438 * 8 7 6 10 10 N 1.34776 * 120.00481 * 0.02562 * 8 7 6 11 11 C 1.46500 * 120.00386 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.46878 * 35.00073 * 11 10 8 13 13 C 1.53001 * 109.47290 * 275.00236 * 11 10 8 14 14 C 1.52999 * 109.47037 * 154.99951 * 11 10 8 15 15 H 1.09004 * 109.47434 * 295.00363 * 14 11 10 16 16 C 1.52997 * 109.47114 * 55.00170 * 14 11 10 17 17 N 1.46498 * 109.46963 * 174.99963 * 14 11 10 18 18 C 1.36943 * 119.99752 * 154.72381 * 17 14 11 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 14 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 14 21 21 N 1.31624 * 119.99698 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47159 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47290 * 120.00044 * 22 20 18 25 25 H 1.48503 * 109.47163 * 240.00049 * 22 20 18 26 26 C 1.39181 * 119.74934 * 0.27439 * 7 6 5 27 27 C 1.38914 * 119.84309 * 359.47122 * 26 7 6 28 28 S 1.70650 * 124.23997 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.46971 * 269.99941 * 1 2 3 30 30 H 1.08998 * 109.46984 * 29.99969 * 1 2 3 31 31 H 1.08997 * 109.47448 * 150.00471 * 1 2 3 32 32 H 1.08004 * 119.67927 * 0.04772 * 5 4 3 33 33 H 1.07997 * 119.69984 * 179.97438 * 6 5 4 34 34 H 0.96999 * 119.99467 * 0.02562 * 10 8 7 35 35 H 1.09000 * 109.47005 * 300.00291 * 13 11 10 36 36 H 1.09004 * 109.47050 * 59.99647 * 13 11 10 37 37 H 1.08998 * 109.47150 * 179.97438 * 13 11 10 38 38 H 1.08997 * 109.47293 * 179.97438 * 16 14 11 39 39 H 1.09003 * 109.47189 * 300.00067 * 16 14 11 40 40 H 1.09009 * 109.47238 * 59.99946 * 16 14 11 41 41 H 0.97001 * 120.00384 * 335.00737 * 17 14 11 42 42 H 0.96999 * 119.99739 * 180.02562 * 21 20 18 43 43 H 1.07997 * 120.07478 * 179.72566 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2276 1.0585 0.0000 4 6 3.5635 0.9104 0.0005 5 6 4.5763 1.8949 0.0002 6 6 5.8865 1.5397 0.0003 7 6 6.2597 0.1883 0.0014 8 6 7.6874 -0.1858 0.0021 9 8 8.0086 -1.3585 0.0035 10 7 8.6352 0.7724 0.0023 11 6 10.0524 0.4011 0.0035 12 1 10.1909 -0.5056 -0.5853 13 6 10.5128 0.1510 1.4410 14 6 10.8775 1.5361 -0.6061 15 1 10.6115 1.6552 -1.6565 16 6 10.5872 2.8376 0.1441 17 7 12.3031 1.2168 -0.4965 18 6 13.1970 1.7642 -1.3778 19 1 12.8517 2.4347 -2.1508 20 6 14.5471 1.4572 -1.2775 21 7 14.9678 0.6396 -0.3357 22 14 15.7666 2.2043 -2.4791 23 1 15.0453 3.0836 -3.4339 24 1 16.7708 3.0038 -1.7324 25 1 16.4533 1.1199 -3.2260 26 6 5.2789 -0.7991 -0.0035 27 6 3.9368 -0.4404 0.0017 28 16 2.4672 -1.4107 -0.0006 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5137 32 1 4.3057 2.9405 0.0001 33 1 6.6484 2.3051 -0.0004 34 1 8.3790 1.7080 0.0023 35 1 10.3742 1.0577 2.0299 36 1 9.9249 -0.6577 1.8753 37 1 11.5671 -0.1258 1.4419 38 1 11.1754 3.6461 -0.2899 39 1 9.5265 3.0751 0.0626 40 1 10.8533 2.7186 1.1945 41 1 12.6133 0.6146 0.1977 42 1 15.9112 0.4253 -0.2654 43 1 5.5605 -1.8417 -0.0072 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505723531.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:19 Heat of formation + Delta-G solvation = 9.967029 kcal Electronic energy + Delta-G solvation = -25120.342538 eV Core-core repulsion = 21484.385356 eV Total energy + Delta-G solvation = -3635.957182 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 3.26 seconds Orbital eigenvalues (eV) -41.81127 -40.82710 -38.63485 -37.76327 -35.67098 -33.75124 -32.68149 -32.31404 -31.08170 -29.81957 -29.27310 -26.16662 -25.59741 -25.15614 -23.90700 -22.48159 -21.50696 -20.74060 -19.85642 -19.42221 -18.68748 -17.33894 -16.96022 -16.65437 -16.48451 -16.28564 -16.00341 -15.92839 -15.42825 -15.17950 -15.06797 -14.68334 -14.35718 -14.22446 -14.07156 -13.89868 -13.59834 -13.48836 -13.12598 -13.07282 -12.99184 -12.82365 -12.64700 -12.46575 -12.07209 -12.01984 -12.00467 -11.66483 -11.59373 -11.31665 -11.14705 -10.95736 -10.77254 -10.21789 -9.74754 -9.26149 -9.02149 -7.92993 -5.21552 -1.00096 -0.00429 0.09196 0.57717 0.83164 1.48716 1.49464 1.59046 1.85803 2.00405 2.58486 2.63824 2.78874 3.41133 3.44024 3.54175 3.82838 3.90021 3.97306 3.99543 4.04442 4.08545 4.27250 4.33925 4.57593 4.61401 4.65478 4.68971 4.70009 4.86005 4.88584 4.96102 4.97713 5.04773 5.07425 5.14255 5.21732 5.26349 5.42361 5.49001 5.55738 5.65756 6.29377 6.46390 6.47453 7.12643 7.36034 8.10457 8.33171 9.30719 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.032696 B = 0.002040 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.155336 B =13719.040734 C =14056.028239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.100 3.900 3 N -0.500 5.500 4 C 0.094 3.906 5 C -0.072 4.072 6 C -0.065 4.065 7 C -0.129 4.129 8 C 0.559 3.441 9 O -0.578 6.578 10 N -0.696 5.696 11 C 0.149 3.851 12 H 0.059 0.941 13 C -0.151 4.151 14 C 0.165 3.835 15 H 0.049 0.951 16 C -0.160 4.160 17 N -0.734 5.734 18 C -0.235 4.235 19 H 0.079 0.921 20 C -0.077 4.077 21 N -0.969 5.969 22 Si 0.971 3.029 23 H -0.265 1.265 24 H -0.295 1.295 25 H -0.298 1.298 26 C -0.012 4.012 27 C -0.221 4.221 28 S 0.135 5.865 29 H 0.110 0.890 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.165 0.835 33 H 0.169 0.831 34 H 0.414 0.586 35 H 0.075 0.925 36 H 0.050 0.950 37 H 0.053 0.947 38 H 0.044 0.956 39 H 0.078 0.922 40 H 0.052 0.948 41 H 0.376 0.624 42 H 0.250 0.750 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.579 1.795 2.523 32.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.183 4.183 3 N -0.215 5.215 4 C -0.027 4.027 5 C -0.093 4.093 6 C -0.086 4.086 7 C -0.135 4.135 8 C 0.347 3.653 9 O -0.459 6.459 10 N -0.350 5.350 11 C 0.044 3.956 12 H 0.077 0.923 13 C -0.209 4.209 14 C 0.056 3.944 15 H 0.067 0.933 16 C -0.219 4.219 17 N -0.376 5.376 18 C -0.367 4.367 19 H 0.097 0.903 20 C -0.269 4.269 21 N -0.620 5.620 22 Si 0.801 3.199 23 H -0.189 1.189 24 H -0.222 1.222 25 H -0.225 1.225 26 C -0.035 4.035 27 C -0.340 4.340 28 S 0.392 5.608 29 H 0.128 0.872 30 H 0.118 0.882 31 H 0.126 0.874 32 H 0.183 0.817 33 H 0.187 0.813 34 H 0.254 0.746 35 H 0.094 0.906 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.097 0.903 40 H 0.071 0.929 41 H 0.211 0.789 42 H 0.059 0.941 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -32.857 0.531 2.360 32.946 hybrid contribution 1.995 0.784 -0.286 2.163 sum -30.862 1.315 2.074 30.960 Atomic orbital electron populations 1.20845 0.81703 1.06099 1.05929 1.27646 1.03593 0.90394 0.96652 1.66256 1.03962 1.32252 1.19074 1.19727 0.89925 0.92089 1.01007 1.20565 0.89719 0.99660 0.99318 1.21074 0.96923 0.94504 0.96104 1.19754 0.91610 0.94964 1.07202 1.18382 0.85989 0.85204 0.75740 1.90780 1.83482 1.19861 1.51784 1.45879 1.05190 1.10166 1.73740 1.20953 0.79519 0.98034 0.97124 0.92251 1.22044 1.00851 1.02100 0.95931 1.20549 0.83710 0.92666 0.97518 0.93284 1.22381 1.00921 0.97894 1.00747 1.42663 1.01610 1.56195 1.37150 1.19654 0.88503 1.20566 1.07950 0.90324 1.25537 0.99035 1.01334 1.01031 1.69824 1.14452 1.41008 1.36748 0.85101 0.79097 0.77324 0.78401 1.18880 1.22197 1.22537 1.20411 0.88768 1.00303 0.94007 1.23908 0.99266 0.97754 1.13028 1.83943 0.93941 1.09739 1.73135 0.87217 0.88215 0.87382 0.81735 0.81347 0.74600 0.90623 0.93048 0.92783 0.93645 0.90302 0.92858 0.78949 0.94142 0.84604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.48 10.44 71.24 0.74 0.27 16 2 C 0.10 1.46 7.29 88.66 0.65 2.11 16 3 N -0.50 -9.89 10.56 -182.20 -1.92 -11.82 16 4 C 0.09 1.97 7.00 39.95 0.28 2.25 16 5 C -0.07 -1.21 10.03 22.43 0.23 -0.98 16 6 C -0.06 -1.06 9.44 22.17 0.21 -0.85 16 7 C -0.13 -2.95 5.87 -20.11 -0.12 -3.07 16 8 C 0.56 16.13 7.73 86.71 0.67 16.80 16 9 O -0.58 -21.67 16.00 -3.99 -0.06 -21.73 16 10 N -0.70 -17.99 4.94 -445.65 -2.20 -20.19 16 11 C 0.15 5.02 2.62 44.99 0.12 5.14 16 12 H 0.06 2.39 7.58 -2.39 -0.02 2.37 16 13 C -0.15 -5.04 9.00 71.98 0.65 -4.39 16 14 C 0.16 6.04 2.93 44.99 0.13 6.17 16 15 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 16 C -0.16 -4.75 9.01 71.98 0.65 -4.10 16 17 N -0.73 -35.65 5.03 -322.94 -1.62 -37.28 16 18 C -0.23 -12.68 9.93 84.03 0.83 -11.84 16 19 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 20 C -0.08 -4.38 5.50 84.86 0.47 -3.92 16 21 N -0.97 -59.05 13.06 21.65 0.28 -58.77 16 22 Si 0.97 45.84 29.55 68.60 2.03 47.87 16 23 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 24 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 25 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 26 C -0.01 -0.28 9.62 22.66 0.22 -0.06 16 27 C -0.22 -4.72 6.54 22.89 0.15 -4.57 16 28 S 0.14 2.11 23.11 -56.49 -1.31 0.81 16 29 H 0.11 0.30 8.14 -2.38 -0.02 0.28 16 30 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 32 H 0.17 1.92 8.06 -2.91 -0.02 1.89 16 33 H 0.17 1.66 6.38 -2.91 -0.02 1.64 16 34 H 0.41 7.71 4.59 -92.71 -0.43 7.29 16 35 H 0.07 2.22 6.57 -2.39 -0.02 2.20 16 36 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.05 2.08 6.29 -2.39 -0.02 2.06 16 38 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.08 1.58 6.29 -2.39 -0.02 1.57 16 40 H 0.05 1.62 6.57 -2.38 -0.02 1.60 16 41 H 0.38 19.75 5.77 -92.71 -0.54 19.21 16 42 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 43 H 0.14 3.35 7.64 -2.91 -0.02 3.32 16 Total: -1.00 -73.93 367.18 1.17 -72.76 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: 0.11 Total: 29.40 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: 5.87 Total: -1.05 kcal Atomic # 7 Polarization: -122.58 SS G_CDS: -5.47 Total: -128.05 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.06 Total: -21.73 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -1.31 Total: 0.81 kcal Total: -73.93 1.17 -72.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505723531.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.726 kcal (2) G-P(sol) polarization free energy of solvation -73.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.26 seconds