Wall clock time and date at job start Tue Mar 31 2020 16:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.28056 * 124.24389 * 2 1 4 4 C 1.34410 * 117.91715 * 179.97438 * 3 2 1 5 5 C 1.41243 * 129.48565 * 180.02562 * 4 3 2 6 6 C 1.35750 * 120.63643 * 179.97438 * 5 4 3 7 7 C 1.40193 * 120.61900 * 359.97438 * 6 5 4 8 8 C 1.47586 * 120.12884 * 179.97438 * 7 6 5 9 9 O 1.21592 * 120.00034 * 179.97438 * 8 7 6 10 10 N 1.34777 * 120.00015 * 0.02562 * 8 7 6 11 11 C 1.46506 * 120.00033 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.46566 * 324.99334 * 11 10 8 13 13 C 1.52997 * 109.47289 * 84.99600 * 11 10 8 14 14 C 1.52992 * 109.46999 * 205.00067 * 11 10 8 15 15 H 1.08996 * 109.47729 * 64.99409 * 14 11 10 16 16 C 1.53001 * 109.47279 * 304.99690 * 14 11 10 17 17 N 1.46496 * 109.47128 * 184.99986 * 14 11 10 18 18 C 1.36945 * 120.00068 * 205.00034 * 17 14 11 19 19 H 1.07995 * 119.99956 * 359.97438 * 18 17 14 20 20 C 1.38811 * 119.99862 * 180.02562 * 18 17 14 21 21 N 1.31621 * 119.99648 * 179.97438 * 20 18 17 22 22 Si 1.86792 * 120.00208 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.47379 * 90.00286 * 22 20 18 24 24 H 1.48509 * 109.47130 * 210.00431 * 22 20 18 25 25 H 1.48501 * 109.47496 * 330.00144 * 22 20 18 26 26 C 1.39175 * 119.74494 * 0.25470 * 7 6 5 27 27 C 1.38918 * 119.84801 * 359.49225 * 26 7 6 28 28 S 1.70647 * 124.23764 * 179.97438 * 2 1 3 29 29 H 1.09005 * 109.47256 * 90.02118 * 1 2 3 30 30 H 1.09001 * 109.47355 * 210.02717 * 1 2 3 31 31 H 1.09002 * 109.47304 * 330.02836 * 1 2 3 32 32 H 1.08002 * 119.68280 * 359.94785 * 5 4 3 33 33 H 1.08004 * 119.69209 * 179.97438 * 6 5 4 34 34 H 0.96992 * 119.99904 * 359.97438 * 10 8 7 35 35 H 1.09002 * 109.47153 * 179.97438 * 13 11 10 36 36 H 1.09001 * 109.46832 * 60.00146 * 13 11 10 37 37 H 1.09004 * 109.47261 * 300.00128 * 13 11 10 38 38 H 1.08993 * 109.47832 * 180.02562 * 16 14 11 39 39 H 1.09001 * 109.46924 * 300.00271 * 16 14 11 40 40 H 1.09000 * 109.47104 * 59.99686 * 16 14 11 41 41 H 0.96999 * 120.00528 * 24.99813 * 17 14 11 42 42 H 0.97004 * 119.99991 * 179.97438 * 21 20 18 43 43 H 1.08008 * 120.08199 * 179.74698 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2276 1.0586 0.0000 4 6 3.5635 0.9105 0.0005 5 6 4.5763 1.8949 0.0011 6 6 5.8864 1.5396 0.0021 7 6 6.2597 0.1882 0.0031 8 6 7.6874 -0.1859 0.0036 9 8 8.0085 -1.3587 0.0050 10 7 8.6352 0.7723 0.0037 11 6 10.0524 0.4009 0.0036 12 1 10.1903 -0.5055 0.5931 13 6 10.5138 0.1500 -1.4334 14 6 10.8771 1.5362 0.6133 15 1 10.6103 1.6558 1.6633 16 6 10.5874 2.8373 -0.1378 17 7 12.3027 1.2168 0.5049 18 6 13.1968 1.7690 1.3830 19 1 12.8510 2.4402 2.1552 20 6 14.5477 1.4668 1.2800 21 7 15.4070 1.9979 2.1237 22 14 15.1459 0.3064 -0.0560 23 1 15.4817 1.0857 -1.2746 24 1 16.3542 -0.4145 0.4191 25 1 14.0775 -0.6746 -0.3746 26 6 5.2789 -0.7991 -0.0023 27 6 3.9368 -0.4404 0.0020 28 16 2.4671 -1.4108 0.0006 29 1 -0.3634 -0.0004 -1.0277 30 1 -0.3634 -0.8897 0.5143 31 1 -0.3634 0.8902 0.5134 32 1 4.3058 2.9405 0.0004 33 1 6.6484 2.3050 0.0022 34 1 8.3790 1.7078 0.0030 35 1 11.5683 -0.1259 -1.4334 36 1 10.3757 1.0565 -2.0228 37 1 9.9262 -0.6589 -1.8677 38 1 11.1753 3.6460 0.2962 39 1 10.8542 2.7177 -1.1878 40 1 9.5267 3.0749 -0.0572 41 1 12.6134 0.6142 -0.1888 42 1 16.3510 1.7864 2.0519 43 1 5.5604 -1.8418 -0.0057 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505723532.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:31 Heat of formation + Delta-G solvation = 36.239445 kcal Electronic energy + Delta-G solvation = -25194.381645 eV Core-core repulsion = 21559.563720 eV Total energy + Delta-G solvation = -3634.817924 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 4.76 seconds Orbital eigenvalues (eV) -40.99480 -39.82351 -37.53691 -36.78669 -34.15160 -32.41410 -31.74306 -31.52794 -29.99547 -28.71661 -28.46591 -24.84111 -24.57082 -23.79354 -22.53398 -21.71803 -20.51598 -19.48727 -19.01531 -18.19293 -17.53059 -16.38412 -16.16197 -15.64645 -15.48491 -15.11786 -14.78264 -14.42232 -14.35209 -14.12291 -13.89821 -13.76473 -13.53645 -13.50915 -12.91974 -12.73596 -12.68601 -12.66465 -12.23460 -11.81678 -11.78862 -11.57360 -11.30362 -11.14899 -10.93476 -10.65580 -10.61351 -10.36471 -10.10872 -10.08186 -10.00204 -9.60654 -9.13295 -8.99701 -8.92849 -8.54744 -7.34847 -5.80900 -3.17708 -0.26106 0.73335 0.75200 1.24564 1.60356 2.76203 3.08689 3.35539 3.36940 3.38138 3.43906 3.48760 4.14284 4.42951 4.47324 4.55690 4.67101 4.72458 4.85101 4.89417 5.02715 5.18333 5.24868 5.33382 5.35378 5.38885 5.53195 5.59523 5.64388 5.71970 5.82476 5.86976 5.96335 6.08888 6.14091 6.21747 6.27169 6.41772 6.57457 6.69037 6.93266 7.14116 7.49242 7.93871 8.16582 8.37470 9.15105 9.87367 10.05799 11.37028 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.033451 B = 0.002138 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.841030 B =13091.749267 C =13526.254947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.094 3.906 3 N -0.472 5.472 4 C 0.105 3.895 5 C -0.070 4.070 6 C -0.075 4.075 7 C -0.115 4.115 8 C 0.558 3.442 9 O -0.535 6.535 10 N -0.710 5.710 11 C 0.133 3.867 12 H 0.092 0.908 13 C -0.162 4.162 14 C 0.173 3.827 15 H 0.062 0.938 16 C -0.170 4.170 17 N -0.743 5.743 18 C -0.245 4.245 19 H 0.091 0.909 20 C 0.007 3.993 21 N -0.931 5.931 22 Si 0.881 3.119 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.276 1.276 26 C -0.005 4.005 27 C -0.196 4.196 28 S 0.113 5.887 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.399 0.601 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.035 0.965 41 H 0.363 0.637 42 H 0.260 0.740 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.084 -3.085 -6.809 31.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.190 4.190 3 N -0.187 5.187 4 C -0.017 4.017 5 C -0.091 4.091 6 C -0.097 4.097 7 C -0.122 4.122 8 C 0.344 3.656 9 O -0.413 6.413 10 N -0.363 5.363 11 C 0.028 3.972 12 H 0.110 0.890 13 C -0.221 4.221 14 C 0.062 3.938 15 H 0.080 0.920 16 C -0.230 4.230 17 N -0.388 5.388 18 C -0.375 4.375 19 H 0.109 0.891 20 C -0.189 4.189 21 N -0.579 5.579 22 Si 0.711 3.289 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.202 1.202 26 C -0.028 4.028 27 C -0.315 4.315 28 S 0.370 5.630 29 H 0.111 0.889 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.160 0.840 33 H 0.158 0.842 34 H 0.236 0.764 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.198 0.802 42 H 0.070 0.930 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -31.271 -4.356 -6.602 32.256 hybrid contribution 1.117 0.426 -0.928 1.514 sum -30.153 -3.929 -7.531 31.327 Atomic orbital electron populations 1.20602 0.84601 1.04772 1.04467 1.26876 1.01995 0.90982 0.99149 1.66159 1.04100 1.31312 1.17096 1.19323 0.89169 0.91697 1.01492 1.20275 0.90108 0.98775 0.99919 1.20861 0.96162 0.95254 0.97419 1.19935 0.93494 0.93610 1.05123 1.18005 0.84920 0.85834 0.76846 1.90799 1.82710 1.18011 1.49776 1.46116 1.06582 1.09457 1.74170 1.21396 0.78315 1.00063 0.97424 0.89005 1.22177 1.01842 1.01721 0.96316 1.20331 0.84845 0.90810 0.97772 0.92025 1.22515 0.98517 1.00524 1.01419 1.42789 1.01501 1.56473 1.38007 1.19039 0.87458 1.22325 1.08690 0.89085 1.24656 0.95834 0.99894 0.98535 1.69696 1.02200 1.47542 1.38433 0.86609 0.78412 0.81430 0.82442 1.20989 1.21621 1.20214 1.20430 0.88103 1.00594 0.93662 1.23746 0.98828 0.96792 1.12118 1.84038 0.95254 1.10105 1.73637 0.88946 0.89541 0.88787 0.84023 0.84163 0.76376 0.91278 0.92076 0.92636 0.91725 0.92820 0.94642 0.80206 0.92991 0.83636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.34 10.44 36.00 0.38 0.03 16 2 C 0.09 0.76 7.29 -13.85 -0.10 0.66 16 3 N -0.47 -4.99 10.56 -8.96 -0.09 -5.09 16 4 C 0.10 1.14 7.00 -84.88 -0.59 0.55 16 5 C -0.07 -0.65 10.03 -39.33 -0.39 -1.04 16 6 C -0.08 -0.68 9.44 -39.74 -0.38 -1.06 16 7 C -0.11 -1.31 5.87 -105.00 -0.62 -1.92 16 8 C 0.56 7.75 7.73 -12.45 -0.10 7.65 16 9 O -0.54 -9.31 16.00 5.28 0.08 -9.23 16 10 N -0.71 -9.12 4.94 -54.83 -0.27 -9.39 16 11 C 0.13 2.10 2.62 -67.93 -0.18 1.93 16 12 H 0.09 1.67 7.57 -51.93 -0.39 1.27 16 13 C -0.16 -2.48 9.00 37.16 0.33 -2.14 16 14 C 0.17 3.09 2.93 -67.94 -0.20 2.89 16 15 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 16 C -0.17 -2.60 9.01 37.16 0.33 -2.26 16 17 N -0.74 -16.80 4.84 -53.43 -0.26 -17.06 16 18 C -0.25 -6.70 10.41 -15.06 -0.16 -6.86 16 19 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 20 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 21 N -0.93 -28.81 13.97 55.49 0.78 -28.04 16 22 Si 0.88 21.82 27.73 -169.99 -4.71 17.10 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 26 C 0.00 -0.06 9.62 -38.98 -0.37 -0.43 16 27 C -0.20 -2.10 6.54 -38.61 -0.25 -2.35 16 28 S 0.11 0.92 23.11 -107.50 -2.48 -1.56 16 29 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.14 0.91 6.38 -52.48 -0.33 0.57 16 34 H 0.40 4.05 4.59 -40.82 -0.19 3.86 16 35 H 0.07 1.14 6.29 -51.93 -0.33 0.82 16 36 H 0.06 0.84 6.56 -51.93 -0.34 0.50 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.05 0.81 6.56 -51.93 -0.34 0.47 16 40 H 0.03 0.40 6.29 -51.93 -0.33 0.08 16 41 H 0.36 8.13 3.63 -40.82 -0.15 7.98 16 42 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 43 H 0.15 1.63 7.64 -52.48 -0.40 1.23 16 LS Contribution 364.05 15.07 5.49 5.49 Total: -1.00 -34.01 364.05 -9.21 -43.23 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -5.35 Total: 8.80 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -2.39 Total: -4.26 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: 0.15 Total: -59.57 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.08 Total: -9.23 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.10 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.48 Total: -1.56 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.01 -9.21 -43.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505723532.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.468 kcal (2) G-P(sol) polarization free energy of solvation -34.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.76 seconds