Wall clock time and date at job start Tue Mar 31 2020 16:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.28056 * 124.24389 * 2 1 4 4 C 1.34410 * 117.91715 * 179.97438 * 3 2 1 5 5 C 1.41243 * 129.48565 * 180.02562 * 4 3 2 6 6 C 1.35750 * 120.63643 * 179.97438 * 5 4 3 7 7 C 1.40193 * 120.61900 * 359.97438 * 6 5 4 8 8 C 1.47586 * 120.12884 * 179.97438 * 7 6 5 9 9 O 1.21592 * 120.00034 * 179.97438 * 8 7 6 10 10 N 1.34777 * 120.00015 * 0.02562 * 8 7 6 11 11 C 1.46506 * 120.00033 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.46566 * 324.99334 * 11 10 8 13 13 C 1.52997 * 109.47289 * 84.99600 * 11 10 8 14 14 C 1.52992 * 109.46999 * 205.00067 * 11 10 8 15 15 H 1.08996 * 109.47729 * 64.99409 * 14 11 10 16 16 C 1.53001 * 109.47279 * 304.99690 * 14 11 10 17 17 N 1.46496 * 109.47128 * 184.99986 * 14 11 10 18 18 C 1.36945 * 120.00068 * 205.00034 * 17 14 11 19 19 H 1.07995 * 119.99956 * 359.97438 * 18 17 14 20 20 C 1.38811 * 119.99862 * 180.02562 * 18 17 14 21 21 N 1.31621 * 119.99648 * 179.97438 * 20 18 17 22 22 Si 1.86792 * 120.00208 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.47379 * 90.00286 * 22 20 18 24 24 H 1.48509 * 109.47130 * 210.00431 * 22 20 18 25 25 H 1.48501 * 109.47496 * 330.00144 * 22 20 18 26 26 C 1.39175 * 119.74494 * 0.25470 * 7 6 5 27 27 C 1.38918 * 119.84801 * 359.49225 * 26 7 6 28 28 S 1.70647 * 124.23764 * 179.97438 * 2 1 3 29 29 H 1.09005 * 109.47256 * 90.02118 * 1 2 3 30 30 H 1.09001 * 109.47355 * 210.02717 * 1 2 3 31 31 H 1.09002 * 109.47304 * 330.02836 * 1 2 3 32 32 H 1.08002 * 119.68280 * 359.94785 * 5 4 3 33 33 H 1.08004 * 119.69209 * 179.97438 * 6 5 4 34 34 H 0.96992 * 119.99904 * 359.97438 * 10 8 7 35 35 H 1.09002 * 109.47153 * 179.97438 * 13 11 10 36 36 H 1.09001 * 109.46832 * 60.00146 * 13 11 10 37 37 H 1.09004 * 109.47261 * 300.00128 * 13 11 10 38 38 H 1.08993 * 109.47832 * 180.02562 * 16 14 11 39 39 H 1.09001 * 109.46924 * 300.00271 * 16 14 11 40 40 H 1.09000 * 109.47104 * 59.99686 * 16 14 11 41 41 H 0.96999 * 120.00528 * 24.99813 * 17 14 11 42 42 H 0.97004 * 119.99991 * 179.97438 * 21 20 18 43 43 H 1.08008 * 120.08199 * 179.74698 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2276 1.0586 0.0000 4 6 3.5635 0.9105 0.0005 5 6 4.5763 1.8949 0.0011 6 6 5.8864 1.5396 0.0021 7 6 6.2597 0.1882 0.0031 8 6 7.6874 -0.1859 0.0036 9 8 8.0085 -1.3587 0.0050 10 7 8.6352 0.7723 0.0037 11 6 10.0524 0.4009 0.0036 12 1 10.1903 -0.5055 0.5931 13 6 10.5138 0.1500 -1.4334 14 6 10.8771 1.5362 0.6133 15 1 10.6103 1.6558 1.6633 16 6 10.5874 2.8373 -0.1378 17 7 12.3027 1.2168 0.5049 18 6 13.1968 1.7690 1.3830 19 1 12.8510 2.4402 2.1552 20 6 14.5477 1.4668 1.2800 21 7 15.4070 1.9979 2.1237 22 14 15.1459 0.3064 -0.0560 23 1 15.4817 1.0857 -1.2746 24 1 16.3542 -0.4145 0.4191 25 1 14.0775 -0.6746 -0.3746 26 6 5.2789 -0.7991 -0.0023 27 6 3.9368 -0.4404 0.0020 28 16 2.4671 -1.4108 0.0006 29 1 -0.3634 -0.0004 -1.0277 30 1 -0.3634 -0.8897 0.5143 31 1 -0.3634 0.8902 0.5134 32 1 4.3058 2.9405 0.0004 33 1 6.6484 2.3050 0.0022 34 1 8.3790 1.7078 0.0030 35 1 11.5683 -0.1259 -1.4334 36 1 10.3757 1.0565 -2.0228 37 1 9.9262 -0.6589 -1.8677 38 1 11.1753 3.6460 0.2962 39 1 10.8542 2.7177 -1.1878 40 1 9.5267 3.0749 -0.0572 41 1 12.6134 0.6142 -0.1888 42 1 16.3510 1.7864 2.0519 43 1 5.5604 -1.8418 -0.0057 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505723532.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:29 Heat of formation + Delta-G solvation = 13.137151 kcal Electronic energy + Delta-G solvation = -25195.383435 eV Core-core repulsion = 21559.563720 eV Total energy + Delta-G solvation = -3635.819715 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 3.72 seconds Orbital eigenvalues (eV) -41.81944 -40.84806 -38.73911 -37.78459 -35.74068 -33.85746 -32.77635 -32.32245 -31.38414 -30.09708 -29.28892 -26.12200 -25.54322 -25.06687 -23.81692 -22.48366 -21.51692 -20.81573 -20.15770 -19.65429 -18.68414 -17.37468 -16.97101 -16.72885 -16.49549 -16.31662 -16.11235 -15.75891 -15.49434 -15.36571 -15.07058 -14.68274 -14.38946 -14.23718 -14.11120 -13.99654 -13.68554 -13.59807 -13.22986 -13.14920 -13.09681 -12.88075 -12.63500 -12.47069 -12.24978 -12.01319 -11.88679 -11.78068 -11.62366 -11.31926 -11.16787 -10.99439 -10.77508 -10.23859 -9.75179 -9.34344 -9.26516 -8.01449 -5.35016 -1.00509 -0.00658 0.08958 0.57270 0.82650 1.38139 1.40486 1.47188 1.84948 1.98385 2.48465 2.63304 2.78669 3.30221 3.43480 3.51145 3.65025 3.81133 3.86760 3.97398 4.03308 4.04040 4.24712 4.29866 4.56503 4.57959 4.63647 4.64962 4.68739 4.82766 4.86714 4.93011 4.95273 5.01922 5.06584 5.13788 5.15647 5.24072 5.39026 5.47244 5.62496 5.79000 6.22000 6.45173 6.46657 7.07349 7.11514 7.83477 8.01323 9.19690 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.033451 B = 0.002138 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.841030 B =13091.749267 C =13526.254947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.100 3.900 3 N -0.501 5.501 4 C 0.094 3.906 5 C -0.073 4.073 6 C -0.065 4.065 7 C -0.129 4.129 8 C 0.561 3.439 9 O -0.576 6.576 10 N -0.697 5.697 11 C 0.145 3.855 12 H 0.065 0.935 13 C -0.158 4.158 14 C 0.168 3.832 15 H 0.050 0.950 16 C -0.162 4.162 17 N -0.748 5.748 18 C -0.225 4.225 19 H 0.062 0.938 20 C -0.063 4.063 21 N -0.982 5.982 22 Si 0.946 3.054 23 H -0.275 1.275 24 H -0.298 1.298 25 H -0.255 1.255 26 C -0.011 4.011 27 C -0.221 4.221 28 S 0.136 5.864 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.164 0.836 33 H 0.169 0.831 34 H 0.414 0.586 35 H 0.056 0.944 36 H 0.080 0.920 37 H 0.056 0.944 38 H 0.041 0.959 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.366 0.634 42 H 0.257 0.743 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.982 -2.780 -8.547 35.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.183 4.183 3 N -0.216 5.216 4 C -0.028 4.028 5 C -0.094 4.094 6 C -0.086 4.086 7 C -0.136 4.136 8 C 0.349 3.651 9 O -0.457 6.457 10 N -0.351 5.351 11 C 0.039 3.961 12 H 0.083 0.917 13 C -0.216 4.216 14 C 0.060 3.940 15 H 0.068 0.932 16 C -0.221 4.221 17 N -0.393 5.393 18 C -0.356 4.356 19 H 0.079 0.921 20 C -0.254 4.254 21 N -0.633 5.633 22 Si 0.774 3.226 23 H -0.201 1.201 24 H -0.225 1.225 25 H -0.180 1.180 26 C -0.034 4.034 27 C -0.340 4.340 28 S 0.393 5.607 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.117 0.883 32 H 0.182 0.818 33 H 0.187 0.813 34 H 0.255 0.745 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.202 0.798 42 H 0.066 0.934 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -34.248 -4.035 -8.366 35.485 hybrid contribution 1.772 0.336 -0.317 1.831 sum -32.477 -3.698 -8.683 33.820 Atomic orbital electron populations 1.20845 0.81744 1.06083 1.05925 1.27639 1.03590 0.90416 0.96668 1.66254 1.04009 1.32272 1.19067 1.19729 0.89906 0.92123 1.01009 1.20567 0.89790 0.99637 0.99357 1.21077 0.96883 0.94575 0.96076 1.19745 0.91698 0.94890 1.07221 1.18336 0.85912 0.85190 0.75693 1.90780 1.83445 1.19757 1.51722 1.45857 1.05131 1.10236 1.73847 1.20995 0.79672 0.97974 0.97430 0.91662 1.22135 1.00917 1.02745 0.95805 1.20515 0.82635 0.92956 0.97944 0.93229 1.22371 1.01174 0.97598 1.00987 1.42802 1.02957 1.56350 1.37215 1.19003 0.88177 1.20528 1.07865 0.92050 1.25428 0.96212 1.02423 1.01357 1.69870 1.02350 1.50013 1.41024 0.85547 0.77855 0.79640 0.79596 1.20085 1.22527 1.17971 1.20418 0.88721 1.00336 0.93957 1.23918 0.99310 0.97709 1.13039 1.83940 0.93956 1.09709 1.73114 0.87209 0.87388 0.88260 0.81843 0.81330 0.74547 0.92561 0.90070 0.92518 0.93967 0.91995 0.90106 0.79848 0.93435 0.84507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.45 10.44 71.24 0.74 0.29 16 2 C 0.10 1.42 7.29 88.66 0.65 2.07 16 3 N -0.50 -9.72 10.56 -182.20 -1.92 -11.64 16 4 C 0.09 1.92 7.00 39.95 0.28 2.19 16 5 C -0.07 -1.18 10.03 22.43 0.23 -0.95 16 6 C -0.06 -1.00 9.44 22.17 0.21 -0.80 16 7 C -0.13 -2.79 5.87 -20.11 -0.12 -2.91 16 8 C 0.56 15.07 7.73 86.71 0.67 15.74 16 9 O -0.58 -20.20 16.00 -4.01 -0.06 -20.26 16 10 N -0.70 -16.51 4.94 -445.65 -2.20 -18.71 16 11 C 0.14 4.41 2.62 44.99 0.12 4.53 16 12 H 0.07 2.37 7.57 -2.39 -0.02 2.35 16 13 C -0.16 -4.50 9.00 71.98 0.65 -3.85 16 14 C 0.17 5.82 2.93 44.99 0.13 5.95 16 15 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 16 C -0.16 -4.54 9.01 71.98 0.65 -3.89 16 17 N -0.75 -33.39 4.84 -322.96 -1.56 -34.95 16 18 C -0.22 -12.45 10.41 84.03 0.87 -11.57 16 19 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 20 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16 21 N -0.98 -62.48 13.97 21.65 0.30 -62.18 16 22 Si 0.95 45.27 27.73 68.60 1.90 47.17 16 23 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 25 H -0.25 -11.15 6.52 99.48 0.65 -10.50 16 26 C -0.01 -0.25 9.62 22.66 0.22 -0.04 16 27 C -0.22 -4.56 6.54 22.90 0.15 -4.41 16 28 S 0.14 2.04 23.11 -56.49 -1.31 0.73 16 29 H 0.11 0.27 8.14 -2.38 -0.02 0.25 16 30 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 33 H 0.17 1.50 6.38 -2.91 -0.02 1.48 16 34 H 0.41 7.00 4.59 -92.71 -0.43 6.57 16 35 H 0.06 1.76 6.29 -2.39 -0.02 1.74 16 36 H 0.08 1.97 6.56 -2.39 -0.02 1.96 16 37 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.06 1.66 6.56 -2.39 -0.02 1.64 16 40 H 0.08 1.51 6.29 -2.39 -0.02 1.50 16 41 H 0.37 15.91 3.63 -92.71 -0.34 15.57 16 42 H 0.26 15.65 8.31 -92.71 -0.77 14.87 16 43 H 0.14 3.18 7.64 -2.91 -0.02 3.16 16 Total: -1.00 -76.41 364.05 1.31 -75.11 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: 0.25 Total: 25.57 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 5.91 Total: -0.83 kcal Atomic # 7 Polarization: -122.09 SS G_CDS: -5.38 Total: -127.48 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.06 Total: -20.26 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.90 Total: 47.17 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -1.31 Total: 0.73 kcal Total: -76.41 1.31 -75.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505723532.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.245 kcal (2) G-P(sol) polarization free energy of solvation -76.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.72 seconds