Wall clock time and date at job start Tue Mar 31 2020 16:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.28051 * 124.24014 * 2 1 4 4 C 1.34416 * 117.91720 * 180.02562 * 3 2 1 5 5 C 1.41238 * 129.48432 * 179.97438 * 4 3 2 6 6 C 1.35749 * 120.63813 * 180.02562 * 5 4 3 7 7 C 1.40195 * 120.61240 * 0.02562 * 6 5 4 8 8 C 1.47592 * 120.12345 * 179.70656 * 7 6 5 9 9 O 1.21590 * 119.99721 * 180.02562 * 8 7 6 10 10 N 1.34771 * 120.00164 * 359.97438 * 8 7 6 11 11 C 1.46504 * 120.00024 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.47100 * 325.00528 * 11 10 8 13 13 C 1.53001 * 109.47093 * 85.00677 * 11 10 8 14 14 C 1.52998 * 109.47282 * 205.00309 * 11 10 8 15 15 H 1.09004 * 109.47402 * 300.00387 * 14 11 10 16 16 C 1.53000 * 109.47271 * 60.00030 * 14 11 10 17 17 N 1.46504 * 109.47282 * 180.02562 * 14 11 10 18 18 C 1.36937 * 119.99749 * 155.00044 * 17 14 11 19 19 H 1.07999 * 120.00164 * 0.02562 * 18 17 14 20 20 C 1.38808 * 119.99652 * 180.02562 * 18 17 14 21 21 N 1.31619 * 120.00079 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 120.00262 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.46750 * 90.00321 * 22 20 18 24 24 H 1.48497 * 109.47234 * 210.00237 * 22 20 18 25 25 H 1.48495 * 109.46801 * 330.00543 * 22 20 18 26 26 C 1.39177 * 119.75075 * 359.97438 * 7 6 5 27 27 C 1.38919 * 119.84454 * 0.02562 * 26 7 6 28 28 S 1.70648 * 124.24149 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47171 * 269.96451 * 1 2 3 30 30 H 1.08998 * 109.46677 * 29.96718 * 1 2 3 31 31 H 1.08996 * 109.47041 * 149.96451 * 1 2 3 32 32 H 1.08002 * 119.68481 * 0.02562 * 5 4 3 33 33 H 1.08000 * 119.69380 * 180.02562 * 6 5 4 34 34 H 0.96998 * 120.00167 * 0.02562 * 10 8 7 35 35 H 1.08995 * 109.47144 * 59.99415 * 13 11 10 36 36 H 1.08992 * 109.47323 * 180.02562 * 13 11 10 37 37 H 1.09009 * 109.46545 * 299.99787 * 13 11 10 38 38 H 1.09010 * 109.47037 * 60.00015 * 16 14 11 39 39 H 1.09000 * 109.47756 * 179.97438 * 16 14 11 40 40 H 1.09001 * 109.47154 * 300.00192 * 16 14 11 41 41 H 0.96998 * 119.99809 * 335.00353 * 17 14 11 42 42 H 0.97001 * 120.00109 * 179.97438 * 21 20 18 43 43 H 1.07995 * 120.07651 * 179.97438 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2276 1.0586 0.0000 4 6 3.5636 0.9105 -0.0005 5 6 4.5762 1.8951 -0.0011 6 6 5.8864 1.5399 -0.0021 7 6 6.2597 0.1885 -0.0031 8 6 7.6875 -0.1855 -0.0108 9 8 8.0087 -1.3582 -0.0121 10 7 8.6351 0.7728 -0.0173 11 6 10.0523 0.4014 -0.0254 12 1 10.1939 -0.5044 0.5639 13 6 10.5052 0.1494 -1.4650 14 6 10.8806 1.5373 0.5782 15 1 10.7390 2.4433 -0.0111 16 6 10.4278 1.7895 2.0178 17 7 12.2979 1.1663 0.5696 18 6 13.2605 2.1401 0.5629 19 1 12.9750 3.1817 0.5645 20 6 14.6033 1.7886 0.5541 21 7 15.5287 2.7245 0.5482 22 14 15.0972 -0.0130 0.5521 23 1 15.2187 -0.4913 -0.8484 24 1 16.4020 -0.1694 1.2435 25 1 14.0634 -0.8104 1.2596 26 6 5.2790 -0.7989 -0.0025 27 6 3.9369 -0.4403 -0.0015 28 16 2.4673 -1.4107 -0.0006 29 1 -0.3633 -0.0006 1.0276 30 1 -0.3632 0.8903 -0.5133 31 1 -0.3633 -0.8896 -0.5144 32 1 4.3057 2.9407 -0.0008 33 1 6.6483 2.3054 -0.0022 34 1 8.3789 1.7083 -0.0166 35 1 10.3635 1.0553 -2.0543 36 1 11.5594 -0.1273 -1.4710 37 1 9.9150 -0.6599 -1.8951 38 1 10.5694 0.8835 2.6072 39 1 11.0182 2.5984 2.4481 40 1 9.3734 2.0658 2.0239 41 1 12.5543 0.2308 0.5685 42 1 16.4670 2.4788 0.5425 43 1 5.5606 -1.8415 -0.0037 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505723534.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:53 Heat of formation + Delta-G solvation = 31.624169 kcal Electronic energy + Delta-G solvation = -25176.050436 eV Core-core repulsion = 21541.032378 eV Total energy + Delta-G solvation = -3635.018058 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.99295 -39.79808 -37.44057 -36.69876 -34.17521 -32.39600 -31.72890 -31.53019 -30.04527 -28.92885 -28.49894 -24.76584 -24.05680 -23.75522 -22.32315 -21.67575 -20.40071 -20.26164 -19.03945 -18.09230 -17.50000 -16.42458 -16.16636 -15.65589 -15.57989 -15.00363 -14.63456 -14.38768 -14.33255 -13.95442 -13.81768 -13.66678 -13.51210 -13.42018 -12.99869 -12.85359 -12.68589 -12.51669 -12.24185 -11.92688 -11.75782 -11.39240 -11.30325 -11.13433 -10.93654 -10.81082 -10.61536 -10.33653 -10.10782 -10.02949 -9.97117 -9.62183 -9.17523 -9.03456 -8.87487 -8.54896 -7.33504 -5.80793 -3.17421 -0.26245 0.73290 0.74971 1.24291 1.60192 2.76093 3.07749 3.36722 3.36855 3.40341 3.44945 3.48677 4.14171 4.42900 4.46911 4.56380 4.67311 4.72282 4.84873 4.89375 5.01519 5.14844 5.32864 5.34277 5.38671 5.39073 5.59702 5.64298 5.67823 5.72467 5.82456 5.97327 6.02856 6.14566 6.21566 6.25239 6.34715 6.47118 6.63279 6.75195 6.90263 7.13975 7.49446 7.93043 8.16141 8.37452 9.14851 9.87463 10.06163 11.37093 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.034481 B = 0.002142 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.837817 B =13067.109148 C =13547.550344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.094 3.906 3 N -0.472 5.472 4 C 0.105 3.895 5 C -0.070 4.070 6 C -0.075 4.075 7 C -0.114 4.114 8 C 0.559 3.441 9 O -0.536 6.536 10 N -0.708 5.708 11 C 0.132 3.868 12 H 0.086 0.914 13 C -0.155 4.155 14 C 0.173 3.827 15 H 0.060 0.940 16 C -0.166 4.166 17 N -0.742 5.742 18 C -0.243 4.243 19 H 0.091 0.909 20 C 0.007 3.993 21 N -0.932 5.932 22 Si 0.881 3.119 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.276 1.276 26 C -0.005 4.005 27 C -0.196 4.196 28 S 0.112 5.888 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.399 0.601 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.050 0.950 38 H 0.046 0.954 39 H 0.060 0.940 40 H 0.039 0.961 41 H 0.362 0.638 42 H 0.260 0.740 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.465 -5.342 -1.877 31.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.190 4.190 3 N -0.187 5.187 4 C -0.017 4.017 5 C -0.091 4.091 6 C -0.097 4.097 7 C -0.121 4.121 8 C 0.345 3.655 9 O -0.414 6.414 10 N -0.359 5.359 11 C 0.028 3.972 12 H 0.104 0.896 13 C -0.213 4.213 14 C 0.063 3.937 15 H 0.078 0.922 16 C -0.226 4.226 17 N -0.385 5.385 18 C -0.373 4.373 19 H 0.109 0.891 20 C -0.189 4.189 21 N -0.579 5.579 22 Si 0.711 3.289 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.202 1.202 26 C -0.028 4.028 27 C -0.315 4.315 28 S 0.369 5.631 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.234 0.766 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.196 0.804 42 H 0.070 0.930 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -31.635 -6.509 -1.887 32.353 hybrid contribution 1.035 -0.044 0.093 1.040 sum -30.601 -6.553 -1.794 31.346 Atomic orbital electron populations 1.20602 0.84599 1.04753 1.04485 1.26877 1.01994 0.90971 0.99153 1.66159 1.04111 1.31306 1.17083 1.19325 0.89166 0.91700 1.01491 1.20280 0.90124 0.98777 0.99904 1.20871 0.96174 0.95263 0.97353 1.19937 0.93484 0.93612 1.05114 1.17969 0.84873 0.85788 0.76843 1.90795 1.82699 1.18008 1.49924 1.45942 1.06593 1.09331 1.74040 1.21414 0.78308 0.99879 0.97648 0.89562 1.22073 1.02335 1.01381 0.95514 1.20364 0.84626 0.94639 0.94054 0.92157 1.22430 0.98838 1.01932 0.99373 1.42648 1.00187 1.05347 1.90354 1.19004 0.85614 0.89322 1.43347 0.89113 1.24650 0.95596 0.96799 1.01866 1.69693 0.99895 1.31092 1.57260 0.86602 0.77906 0.86464 0.77903 1.20964 1.21723 1.20206 1.20425 0.88113 1.00578 0.93717 1.23741 0.98822 0.96790 1.12134 1.84034 0.95274 1.10129 1.73669 0.88932 0.88791 0.89555 0.84023 0.84066 0.76557 0.92454 0.90644 0.93107 0.93463 0.92059 0.94245 0.80441 0.93007 0.83674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.34 10.44 36.01 0.38 0.04 16 2 C 0.09 0.76 7.29 -13.85 -0.10 0.66 16 3 N -0.47 -4.98 10.56 -8.96 -0.09 -5.07 16 4 C 0.10 1.14 7.00 -84.88 -0.59 0.54 16 5 C -0.07 -0.64 10.03 -39.33 -0.39 -1.04 16 6 C -0.08 -0.67 9.44 -39.74 -0.38 -1.04 16 7 C -0.11 -1.29 5.87 -105.00 -0.62 -1.90 16 8 C 0.56 7.63 7.73 -12.45 -0.10 7.54 16 9 O -0.54 -9.20 16.00 5.29 0.08 -9.12 16 10 N -0.71 -8.91 4.33 -54.83 -0.24 -9.15 16 11 C 0.13 2.07 2.21 -67.93 -0.15 1.92 16 12 H 0.09 1.50 7.58 -51.93 -0.39 1.11 16 13 C -0.15 -2.44 9.33 37.16 0.35 -2.09 16 14 C 0.17 3.06 2.52 -67.93 -0.17 2.89 16 15 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 16 C -0.17 -2.73 9.34 37.16 0.35 -2.38 16 17 N -0.74 -16.62 4.23 -53.42 -0.23 -16.85 16 18 C -0.24 -6.56 10.41 -15.06 -0.16 -6.71 16 19 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 20 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 21 N -0.93 -28.67 13.97 55.49 0.78 -27.90 16 22 Si 0.88 21.80 27.74 -169.99 -4.71 17.08 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 25 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 26 C -0.01 -0.06 9.62 -38.98 -0.37 -0.43 16 27 C -0.20 -2.09 6.54 -38.61 -0.25 -2.34 16 28 S 0.11 0.91 23.11 -107.50 -2.48 -1.57 16 29 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.14 0.89 6.38 -52.49 -0.33 0.55 16 34 H 0.40 3.91 6.41 -40.82 -0.26 3.65 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 1.31 7.44 -51.93 -0.39 0.92 16 37 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 38 H 0.05 0.81 8.14 -51.92 -0.42 0.38 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.04 0.52 7.45 -51.93 -0.39 0.13 16 41 H 0.36 8.17 5.44 -40.82 -0.22 7.95 16 42 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 43 H 0.15 1.61 7.64 -52.49 -0.40 1.21 16 LS Contribution 371.76 15.07 5.60 5.60 Total: -1.00 -33.80 371.76 -9.38 -43.18 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -5.78 Total: 8.05 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -2.31 Total: -4.26 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: 0.22 Total: -58.97 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.08 Total: -9.12 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.08 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.48 Total: -1.57 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.80 -9.38 -43.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505723534.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.807 kcal (2) G-P(sol) polarization free energy of solvation -33.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds