Wall clock time and date at job start Tue Mar 31 2020 16:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.28051 * 124.24014 * 2 1 4 4 C 1.34416 * 117.91720 * 180.02562 * 3 2 1 5 5 C 1.41238 * 129.48432 * 179.97438 * 4 3 2 6 6 C 1.35749 * 120.63813 * 180.02562 * 5 4 3 7 7 C 1.40195 * 120.61240 * 0.02562 * 6 5 4 8 8 C 1.47592 * 120.12345 * 179.70656 * 7 6 5 9 9 O 1.21590 * 119.99721 * 180.02562 * 8 7 6 10 10 N 1.34771 * 120.00164 * 359.97438 * 8 7 6 11 11 C 1.46504 * 120.00024 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.47100 * 325.00528 * 11 10 8 13 13 C 1.53001 * 109.47093 * 85.00677 * 11 10 8 14 14 C 1.52998 * 109.47282 * 205.00309 * 11 10 8 15 15 H 1.09004 * 109.47402 * 300.00387 * 14 11 10 16 16 C 1.53000 * 109.47271 * 60.00030 * 14 11 10 17 17 N 1.46504 * 109.47282 * 180.02562 * 14 11 10 18 18 C 1.36937 * 119.99749 * 155.00044 * 17 14 11 19 19 H 1.07999 * 120.00164 * 0.02562 * 18 17 14 20 20 C 1.38808 * 119.99652 * 180.02562 * 18 17 14 21 21 N 1.31619 * 120.00079 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 120.00262 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.46750 * 90.00321 * 22 20 18 24 24 H 1.48497 * 109.47234 * 210.00237 * 22 20 18 25 25 H 1.48495 * 109.46801 * 330.00543 * 22 20 18 26 26 C 1.39177 * 119.75075 * 359.97438 * 7 6 5 27 27 C 1.38919 * 119.84454 * 0.02562 * 26 7 6 28 28 S 1.70648 * 124.24149 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47171 * 269.96451 * 1 2 3 30 30 H 1.08998 * 109.46677 * 29.96718 * 1 2 3 31 31 H 1.08996 * 109.47041 * 149.96451 * 1 2 3 32 32 H 1.08002 * 119.68481 * 0.02562 * 5 4 3 33 33 H 1.08000 * 119.69380 * 180.02562 * 6 5 4 34 34 H 0.96998 * 120.00167 * 0.02562 * 10 8 7 35 35 H 1.08995 * 109.47144 * 59.99415 * 13 11 10 36 36 H 1.08992 * 109.47323 * 180.02562 * 13 11 10 37 37 H 1.09009 * 109.46545 * 299.99787 * 13 11 10 38 38 H 1.09010 * 109.47037 * 60.00015 * 16 14 11 39 39 H 1.09000 * 109.47756 * 179.97438 * 16 14 11 40 40 H 1.09001 * 109.47154 * 300.00192 * 16 14 11 41 41 H 0.96998 * 119.99809 * 335.00353 * 17 14 11 42 42 H 0.97001 * 120.00109 * 179.97438 * 21 20 18 43 43 H 1.07995 * 120.07651 * 179.97438 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2276 1.0586 0.0000 4 6 3.5636 0.9105 -0.0005 5 6 4.5762 1.8951 -0.0011 6 6 5.8864 1.5399 -0.0021 7 6 6.2597 0.1885 -0.0031 8 6 7.6875 -0.1855 -0.0108 9 8 8.0087 -1.3582 -0.0121 10 7 8.6351 0.7728 -0.0173 11 6 10.0523 0.4014 -0.0254 12 1 10.1939 -0.5044 0.5639 13 6 10.5052 0.1494 -1.4650 14 6 10.8806 1.5373 0.5782 15 1 10.7390 2.4433 -0.0111 16 6 10.4278 1.7895 2.0178 17 7 12.2979 1.1663 0.5696 18 6 13.2605 2.1401 0.5629 19 1 12.9750 3.1817 0.5645 20 6 14.6033 1.7886 0.5541 21 7 15.5287 2.7245 0.5482 22 14 15.0972 -0.0130 0.5521 23 1 15.2187 -0.4913 -0.8484 24 1 16.4020 -0.1694 1.2435 25 1 14.0634 -0.8104 1.2596 26 6 5.2790 -0.7989 -0.0025 27 6 3.9369 -0.4403 -0.0015 28 16 2.4673 -1.4107 -0.0006 29 1 -0.3633 -0.0006 1.0276 30 1 -0.3632 0.8903 -0.5133 31 1 -0.3633 -0.8896 -0.5144 32 1 4.3057 2.9407 -0.0008 33 1 6.6483 2.3054 -0.0022 34 1 8.3789 1.7083 -0.0166 35 1 10.3635 1.0553 -2.0543 36 1 11.5594 -0.1273 -1.4710 37 1 9.9150 -0.6599 -1.8951 38 1 10.5694 0.8835 2.6072 39 1 11.0182 2.5984 2.4481 40 1 9.3734 2.0658 2.0239 41 1 12.5543 0.2308 0.5685 42 1 16.4670 2.4788 0.5425 43 1 5.5606 -1.8415 -0.0037 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505723534.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:50 Heat of formation + Delta-G solvation = 9.282615 kcal Electronic energy + Delta-G solvation = -25177.019238 eV Core-core repulsion = 21541.032378 eV Total energy + Delta-G solvation = -3635.986860 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 4.85 seconds Orbital eigenvalues (eV) -41.80120 -40.80697 -38.59027 -37.75528 -35.73223 -33.82211 -32.79010 -32.31464 -31.31967 -30.49211 -29.28194 -25.70076 -25.49797 -24.90489 -23.54936 -22.43625 -21.70181 -21.37427 -20.04677 -19.61386 -18.62815 -17.51379 -16.96704 -16.70053 -16.39709 -16.20852 -16.08123 -15.71750 -15.39588 -15.06629 -14.95470 -14.66447 -14.40182 -14.28364 -14.16738 -14.05102 -13.78881 -13.59588 -13.25695 -13.11605 -13.06921 -12.78791 -12.61360 -12.46061 -12.30482 -12.09645 -12.00307 -11.79648 -11.48574 -11.31356 -11.16247 -11.01140 -10.77141 -10.23387 -9.74669 -9.31613 -9.25704 -7.99789 -5.32753 -0.99752 0.00149 0.09453 0.57567 0.83541 1.40444 1.40846 1.47881 1.86365 1.98897 2.49732 2.64429 2.79198 3.32327 3.43865 3.50718 3.68329 3.79021 3.87127 3.98257 4.04735 4.15699 4.26397 4.32250 4.57078 4.59101 4.64919 4.69470 4.73218 4.83317 4.88073 4.93493 4.98363 5.03044 5.07600 5.13774 5.15438 5.30337 5.41730 5.48185 5.51786 5.80665 6.23580 6.46746 6.47821 7.08478 7.13059 7.84748 8.02114 9.21219 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.034481 B = 0.002142 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.837817 B =13067.109148 C =13547.550344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.099 3.901 3 N -0.501 5.501 4 C 0.094 3.906 5 C -0.074 4.074 6 C -0.064 4.064 7 C -0.128 4.128 8 C 0.563 3.437 9 O -0.576 6.576 10 N -0.695 5.695 11 C 0.146 3.854 12 H 0.071 0.929 13 C -0.151 4.151 14 C 0.171 3.829 15 H 0.066 0.934 16 C -0.158 4.158 17 N -0.746 5.746 18 C -0.218 4.218 19 H 0.066 0.934 20 C -0.061 4.061 21 N -0.982 5.982 22 Si 0.944 3.056 23 H -0.279 1.279 24 H -0.299 1.299 25 H -0.257 1.257 26 C -0.011 4.011 27 C -0.221 4.221 28 S 0.136 5.864 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.163 0.837 33 H 0.170 0.830 34 H 0.415 0.585 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.052 0.948 38 H 0.039 0.961 39 H 0.041 0.959 40 H 0.076 0.924 41 H 0.363 0.637 42 H 0.256 0.744 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.467 -5.718 -1.933 34.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.184 4.184 3 N -0.217 5.217 4 C -0.028 4.028 5 C -0.094 4.094 6 C -0.086 4.086 7 C -0.135 4.135 8 C 0.351 3.649 9 O -0.457 6.457 10 N -0.348 5.348 11 C 0.041 3.959 12 H 0.089 0.911 13 C -0.209 4.209 14 C 0.062 3.938 15 H 0.084 0.916 16 C -0.218 4.218 17 N -0.389 5.389 18 C -0.349 4.349 19 H 0.084 0.916 20 C -0.253 4.253 21 N -0.632 5.632 22 Si 0.772 3.228 23 H -0.205 1.205 24 H -0.226 1.226 25 H -0.182 1.182 26 C -0.035 4.035 27 C -0.340 4.340 28 S 0.392 5.608 29 H 0.127 0.873 30 H 0.117 0.883 31 H 0.126 0.874 32 H 0.180 0.820 33 H 0.187 0.813 34 H 0.254 0.746 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.095 0.905 41 H 0.196 0.804 42 H 0.065 0.935 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -34.718 -6.883 -1.940 35.447 hybrid contribution 1.727 0.108 0.104 1.733 sum -32.992 -6.776 -1.836 33.730 Atomic orbital electron populations 1.20843 0.81766 1.06086 1.05896 1.27636 1.03584 0.90427 0.96706 1.66253 1.04050 1.32292 1.19057 1.19724 0.89884 0.92150 1.01053 1.20564 0.89860 0.99592 0.99432 1.21087 0.96843 0.94642 0.95981 1.19750 0.91765 0.94817 1.07124 1.18267 0.85790 0.85141 0.75696 1.90777 1.83402 1.19697 1.51793 1.45697 1.05126 1.10210 1.73731 1.21015 0.79638 0.98199 0.97094 0.91116 1.22017 1.01221 1.01924 0.95730 1.20551 0.82461 0.95584 0.95196 0.91569 1.22308 1.00856 1.00884 0.97730 1.42663 1.01542 1.04476 1.90256 1.18973 0.86428 0.89161 1.40329 0.91634 1.25368 0.95858 1.00851 1.03179 1.69856 1.00032 1.33290 1.60072 0.85575 0.77388 0.81778 0.78052 1.20502 1.22649 1.18159 1.20420 0.88694 1.00353 0.93984 1.23915 0.99334 0.97667 1.13046 1.83931 0.93978 1.09703 1.73140 0.87277 0.88261 0.87362 0.81972 0.81276 0.74633 0.91453 0.92380 0.92884 0.94143 0.94014 0.90478 0.80366 0.93507 0.84474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.45 10.44 71.24 0.74 0.29 16 2 C 0.10 1.41 7.29 88.66 0.65 2.06 16 3 N -0.50 -9.73 10.56 -182.20 -1.92 -11.66 16 4 C 0.09 1.90 7.00 39.95 0.28 2.18 16 5 C -0.07 -1.19 10.03 22.43 0.22 -0.97 16 6 C -0.06 -0.98 9.44 22.17 0.21 -0.77 16 7 C -0.13 -2.70 5.87 -20.11 -0.12 -2.82 16 8 C 0.56 14.65 7.73 86.71 0.67 15.32 16 9 O -0.58 -19.58 16.00 -4.00 -0.06 -19.64 16 10 N -0.70 -15.99 4.33 -445.65 -1.93 -17.92 16 11 C 0.15 4.34 2.21 44.99 0.10 4.44 16 12 H 0.07 2.39 7.58 -2.39 -0.02 2.37 16 13 C -0.15 -4.55 9.33 71.98 0.67 -3.88 16 14 C 0.17 5.76 2.52 44.99 0.11 5.88 16 15 H 0.07 2.20 8.08 -2.38 -0.02 2.18 16 16 C -0.16 -4.91 9.34 71.98 0.67 -4.23 16 17 N -0.75 -32.77 4.23 -322.93 -1.37 -34.14 16 18 C -0.22 -11.79 10.41 84.03 0.87 -10.92 16 19 H 0.07 3.84 8.06 -2.91 -0.02 3.81 16 20 C -0.06 -3.52 5.50 84.86 0.47 -3.05 16 21 N -0.98 -61.81 13.97 21.65 0.30 -61.50 16 22 Si 0.94 45.30 27.74 68.60 1.90 47.21 16 23 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 24 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 25 H -0.26 -11.34 6.52 99.48 0.65 -10.69 16 26 C -0.01 -0.25 9.62 22.66 0.22 -0.03 16 27 C -0.22 -4.50 6.54 22.90 0.15 -4.35 16 28 S 0.14 2.01 23.11 -56.49 -1.31 0.70 16 29 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 32 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 33 H 0.17 1.49 6.38 -2.91 -0.02 1.47 16 34 H 0.42 6.79 6.41 -92.71 -0.59 6.20 16 35 H 0.07 1.87 8.14 -2.39 -0.02 1.86 16 36 H 0.06 1.96 7.44 -2.39 -0.02 1.94 16 37 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 39 H 0.04 1.45 8.14 -2.39 -0.02 1.44 16 40 H 0.08 1.80 7.45 -2.39 -0.02 1.78 16 41 H 0.36 15.91 5.44 -92.71 -0.50 15.40 16 42 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 43 H 0.14 3.12 7.64 -2.91 -0.02 3.10 16 Total: -1.00 -74.57 371.76 1.43 -73.13 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: -0.10 Total: 24.68 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 5.92 Total: -0.87 kcal Atomic # 7 Polarization: -120.30 SS G_CDS: -4.92 Total: -125.22 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.06 Total: -19.64 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.90 Total: 47.21 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -1.31 Total: 0.70 kcal Total: -74.57 1.43 -73.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505723534.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.417 kcal (2) G-P(sol) polarization free energy of solvation -74.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.85 seconds