Wall clock time and date at job start Tue Mar 31 2020 18:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47218 * 2 1 4 4 C 1.53001 * 109.47060 * 240.00677 * 2 1 3 5 5 N 1.46500 * 109.47450 * 184.99809 * 4 2 1 6 6 C 1.46499 * 120.00120 * 270.00218 * 5 4 2 7 7 C 1.34784 * 119.99951 * 89.99762 * 5 4 2 8 8 O 1.21280 * 119.99844 * 359.97438 * 7 5 4 9 9 C 1.50695 * 119.99925 * 180.02562 * 7 5 4 10 10 C 1.50699 * 109.47251 * 179.97438 * 9 7 5 11 11 N 1.28736 * 121.08395 * 90.02197 * 10 9 7 12 12 S 1.69387 * 108.98436 * 179.97438 * 11 10 9 13 13 C 1.76506 * 96.12023 * 0.02562 * 12 11 10 14 14 C 1.38793 * 133.55703 * 180.02562 * 13 12 11 15 15 C 1.36714 * 119.75470 * 179.97438 * 14 13 12 16 16 C 1.38977 * 120.15465 * 359.97438 * 15 14 13 17 17 C 1.36037 * 121.15817 * 359.97438 * 16 15 14 18 18 C 1.40803 * 105.52227 * 0.22884 * 13 12 11 19 19 N 1.46497 * 109.47678 * 120.00741 * 2 1 3 20 20 C 1.36943 * 119.99778 * 275.00227 * 19 2 1 21 21 H 1.08004 * 119.99493 * 359.97438 * 20 19 2 22 22 C 1.38807 * 120.00309 * 179.97438 * 20 19 2 23 23 N 1.31623 * 119.99638 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00376 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47224 * 89.99903 * 24 22 20 26 26 H 1.48499 * 109.47060 * 209.99998 * 24 22 20 27 27 H 1.48508 * 109.47014 * 329.99785 * 24 22 20 28 28 H 1.09005 * 109.47192 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47265 * 299.99676 * 1 2 3 30 30 H 1.09005 * 109.47588 * 59.99276 * 1 2 3 31 31 H 1.09006 * 109.47550 * 64.99792 * 4 2 1 32 32 H 1.09001 * 109.46850 * 304.99841 * 4 2 1 33 33 H 1.09000 * 109.46729 * 269.99606 * 6 5 4 34 34 H 1.08991 * 109.47183 * 29.99290 * 6 5 4 35 35 H 1.09002 * 109.46973 * 149.99811 * 6 5 4 36 36 H 1.09006 * 109.47445 * 59.99758 * 9 7 5 37 37 H 1.08998 * 109.47170 * 300.00061 * 9 7 5 38 38 H 1.07996 * 120.11863 * 359.97438 * 14 13 12 39 39 H 1.07996 * 119.92210 * 180.02562 * 15 14 13 40 40 H 1.08004 * 119.41792 * 180.02562 * 16 15 14 41 41 H 1.08002 * 119.89191 * 180.02562 * 17 16 15 42 42 H 0.96991 * 120.00512 * 94.99107 * 19 2 1 43 43 H 0.96997 * 119.99984 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 7 3.5000 -0.8263 -1.1908 6 6 4.3342 0.2342 -1.7614 7 6 4.0757 -1.8986 -0.6119 8 8 3.3850 -2.7763 -0.1390 9 6 5.5776 -2.0065 -0.5511 10 6 5.9615 -3.2888 0.1413 11 7 6.1329 -4.3777 -0.5237 12 16 6.5550 -5.6182 0.5497 13 6 6.5044 -4.6285 2.0103 14 6 6.7326 -4.8935 3.3535 15 6 6.6122 -3.8892 4.2731 16 6 6.2632 -2.6072 3.8653 17 6 6.0357 -2.3231 2.5546 18 6 6.1443 -3.3377 1.5785 19 7 2.0184 -0.6907 1.1960 20 6 2.1492 -0.0077 2.3757 21 1 1.8926 1.0403 2.4241 22 6 2.6115 -0.6622 3.5091 23 7 2.9237 -1.9395 3.4501 24 14 2.7906 0.2697 5.1181 25 1 1.5229 0.1794 5.8862 26 1 3.8948 -0.3242 5.9138 27 1 3.0965 1.6947 4.8334 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 1.7515 -0.1581 -2.1371 32 1 1.6053 -1.7197 -1.2953 33 1 4.5423 0.0095 -2.8075 34 1 3.8090 1.1867 -1.6919 35 1 5.2721 0.2953 -1.2093 36 1 5.9806 -1.1594 0.0041 37 1 5.9832 -2.0039 -1.5628 38 1 7.0042 -5.8894 3.6708 39 1 6.7895 -4.0922 5.3189 40 1 6.1718 -1.8227 4.6019 41 1 5.7660 -1.3196 2.2603 42 1 2.2490 -1.6318 1.1524 43 1 3.2464 -2.3970 4.2422 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507158344.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:10 Heat of formation + Delta-G solvation = 37.439883 kcal Electronic energy + Delta-G solvation = -27521.014030 eV Core-core repulsion = 23886.248161 eV Total energy + Delta-G solvation = -3634.765869 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.97499 -39.00998 -36.58190 -35.68233 -34.35739 -32.03569 -30.91359 -30.10990 -29.84996 -28.51346 -26.96274 -25.30951 -23.59286 -23.05957 -22.42704 -20.63543 -19.67615 -18.56307 -18.12354 -17.28886 -16.51486 -16.05143 -15.82176 -15.24467 -14.87707 -14.73441 -14.56742 -13.92934 -13.69449 -13.62778 -13.36313 -12.96257 -12.90352 -12.78592 -12.28794 -12.18675 -11.91521 -11.88699 -11.61176 -11.55609 -11.38729 -11.29143 -11.15837 -10.83423 -10.64472 -10.40451 -10.34134 -10.19468 -10.01980 -9.53813 -9.44227 -9.17399 -8.81424 -8.53040 -8.08446 -7.48281 -6.78180 -5.58081 -2.88460 0.89444 1.64760 1.77649 2.11067 2.43801 3.20356 3.41562 3.48548 3.49639 3.51877 4.07632 4.60517 4.64922 4.84779 4.96289 5.17839 5.24940 5.32792 5.40405 5.50763 5.51215 5.56102 5.64751 5.68371 5.79038 5.84304 5.87495 5.92036 6.04806 6.10967 6.29800 6.30460 6.39735 6.41657 6.59445 6.69639 6.82337 6.83797 6.96885 6.99792 7.16562 7.19768 7.78437 7.83191 8.55464 8.76623 9.68559 10.31731 10.71786 11.59732 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.009798 B = 0.006333 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2857.012229 B = 4420.064678 C = 6530.151227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.155 3.845 3 H 0.043 0.957 4 C 0.112 3.888 5 N -0.609 5.609 6 C 0.082 3.918 7 C 0.530 3.470 8 O -0.503 6.503 9 C -0.075 4.075 10 C 0.192 3.808 11 N -0.442 5.442 12 S 0.155 5.845 13 C -0.128 4.128 14 C -0.095 4.095 15 C -0.078 4.078 16 C -0.113 4.113 17 C 0.002 3.998 18 C -0.115 4.115 19 N -0.720 5.720 20 C -0.240 4.240 21 H 0.061 0.939 22 C -0.007 4.007 23 N -0.905 5.905 24 Si 0.887 3.113 25 H -0.294 1.294 26 H -0.292 1.292 27 H -0.286 1.286 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.034 0.966 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.124 0.876 41 H 0.130 0.870 42 H 0.399 0.601 43 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.354 0.976 -7.220 11.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.043 3.957 3 H 0.060 0.940 4 C -0.012 4.012 5 N -0.343 5.343 6 C -0.062 4.062 7 C 0.315 3.685 8 O -0.376 6.376 9 C -0.120 4.120 10 C 0.002 3.998 11 N -0.253 5.253 12 S 0.309 5.691 13 C -0.248 4.248 14 C -0.119 4.119 15 C -0.100 4.100 16 C -0.134 4.134 17 C -0.020 4.020 18 C -0.126 4.126 19 N -0.366 5.366 20 C -0.372 4.372 21 H 0.079 0.921 22 C -0.204 4.204 23 N -0.552 5.552 24 Si 0.719 3.281 25 H -0.222 1.222 26 H -0.219 1.219 27 H -0.212 1.212 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.132 0.868 37 H 0.126 0.874 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.148 0.852 42 H 0.238 0.762 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 9.259 -1.253 -8.396 12.561 hybrid contribution -0.407 1.826 2.181 2.874 sum 8.852 0.574 -6.215 10.831 Atomic orbital electron populations 1.22415 0.99275 1.00914 0.99839 1.20626 0.91908 0.95500 0.87655 0.93953 1.21828 0.79075 1.02074 0.98196 1.47510 1.06747 1.20856 1.59191 1.21719 0.95640 0.91250 0.97579 1.19818 0.88930 0.81946 0.77830 1.90747 1.64001 1.39344 1.43551 1.20471 0.95405 0.93820 1.02256 1.21790 0.94149 0.93818 0.90039 1.75634 1.20918 1.01988 1.26774 1.84450 1.73966 1.17964 0.92700 1.23266 1.05374 0.97075 0.99059 1.19779 1.03036 0.99599 0.89436 1.20944 0.97182 0.92839 0.99039 1.20612 0.99851 0.96991 0.95906 1.20540 0.91838 0.98158 0.91511 1.19952 1.05740 0.94443 0.92457 1.42720 1.77594 1.11778 1.04538 1.19142 1.36764 0.93512 0.87766 0.92056 1.24659 1.02826 0.95837 0.97045 1.69754 1.49873 1.07706 1.27872 0.86508 0.77316 0.78856 0.85403 1.22156 1.21862 1.21212 0.93456 0.92716 0.94712 0.91157 0.90390 0.93185 0.91089 0.91377 0.86815 0.87383 0.85700 0.85507 0.85787 0.85222 0.76232 0.93829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 9.49 37.15 0.35 -2.62 16 2 C 0.15 3.03 3.20 -67.94 -0.22 2.81 16 3 H 0.04 0.82 8.08 -51.93 -0.42 0.40 16 4 C 0.11 1.86 5.14 -4.04 -0.02 1.84 16 5 N -0.61 -9.75 2.77 -181.57 -0.50 -10.25 16 6 C 0.08 0.91 10.24 59.85 0.61 1.52 16 7 C 0.53 9.98 6.96 -10.98 -0.08 9.90 16 8 O -0.50 -12.00 13.35 5.56 0.07 -11.93 16 9 C -0.07 -1.16 4.53 -29.04 -0.13 -1.29 16 10 C 0.19 3.52 5.37 -81.23 -0.44 3.08 16 11 N -0.44 -8.26 11.84 34.00 0.40 -7.86 16 12 S 0.15 2.66 23.86 -107.50 -2.56 0.09 16 13 C -0.13 -2.29 6.71 -38.41 -0.26 -2.54 16 14 C -0.10 -1.49 10.02 -39.93 -0.40 -1.89 16 15 C -0.08 -1.18 10.01 -39.86 -0.40 -1.58 16 16 C -0.11 -1.96 9.92 -40.10 -0.40 -2.35 16 17 C 0.00 0.03 9.72 -39.25 -0.38 -0.35 16 18 C -0.12 -2.18 6.04 -105.14 -0.64 -2.82 16 19 N -0.72 -17.85 4.52 -53.43 -0.24 -18.09 16 20 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 21 H 0.06 1.63 7.83 -52.48 -0.41 1.22 16 22 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 23 N -0.90 -25.70 13.06 55.49 0.72 -24.97 16 24 Si 0.89 21.42 29.55 -169.99 -5.02 16.40 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.05 1.07 8.14 -51.92 -0.42 0.65 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 32 H 0.08 1.46 7.42 -51.93 -0.39 1.08 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 35 H 0.07 0.67 6.44 -51.93 -0.33 0.34 16 36 H 0.11 1.53 6.80 -51.93 -0.35 1.17 16 37 H 0.11 1.34 8.11 -51.93 -0.42 0.92 16 38 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 40 H 0.12 2.05 8.06 -52.48 -0.42 1.63 16 41 H 0.13 2.48 7.64 -52.49 -0.40 2.08 16 42 H 0.40 10.90 5.02 -40.82 -0.20 10.70 16 43 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 371.59 15.07 5.60 5.60 Total: -1.00 -33.45 371.59 -10.03 -43.48 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -5.86 Total: 10.67 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -2.63 Total: -3.15 kcal Atomic # 7 Polarization: -61.55 SS G_CDS: 0.38 Total: -61.17 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.07 Total: -11.93 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -2.56 Total: 0.09 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.45 -10.03 -43.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507158344.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.920 kcal (2) G-P(sol) polarization free energy of solvation -33.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds