Wall clock time and date at job start Tue Mar 31 2020 18:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47218 * 2 1 4 4 C 1.53001 * 109.47060 * 240.00677 * 2 1 3 5 5 N 1.46500 * 109.47450 * 184.99809 * 4 2 1 6 6 C 1.46499 * 120.00120 * 270.00218 * 5 4 2 7 7 C 1.34784 * 119.99951 * 89.99762 * 5 4 2 8 8 O 1.21280 * 119.99844 * 359.97438 * 7 5 4 9 9 C 1.50695 * 119.99925 * 180.02562 * 7 5 4 10 10 C 1.50699 * 109.47251 * 179.97438 * 9 7 5 11 11 N 1.28736 * 121.08395 * 90.02197 * 10 9 7 12 12 S 1.69387 * 108.98436 * 179.97438 * 11 10 9 13 13 C 1.76506 * 96.12023 * 0.02562 * 12 11 10 14 14 C 1.38793 * 133.55703 * 180.02562 * 13 12 11 15 15 C 1.36714 * 119.75470 * 179.97438 * 14 13 12 16 16 C 1.38977 * 120.15465 * 359.97438 * 15 14 13 17 17 C 1.36037 * 121.15817 * 359.97438 * 16 15 14 18 18 C 1.40803 * 105.52227 * 0.22884 * 13 12 11 19 19 N 1.46497 * 109.47678 * 120.00741 * 2 1 3 20 20 C 1.36943 * 119.99778 * 275.00227 * 19 2 1 21 21 H 1.08004 * 119.99493 * 359.97438 * 20 19 2 22 22 C 1.38807 * 120.00309 * 179.97438 * 20 19 2 23 23 N 1.31623 * 119.99638 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00376 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47224 * 89.99903 * 24 22 20 26 26 H 1.48499 * 109.47060 * 209.99998 * 24 22 20 27 27 H 1.48508 * 109.47014 * 329.99785 * 24 22 20 28 28 H 1.09005 * 109.47192 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47265 * 299.99676 * 1 2 3 30 30 H 1.09005 * 109.47588 * 59.99276 * 1 2 3 31 31 H 1.09006 * 109.47550 * 64.99792 * 4 2 1 32 32 H 1.09001 * 109.46850 * 304.99841 * 4 2 1 33 33 H 1.09000 * 109.46729 * 269.99606 * 6 5 4 34 34 H 1.08991 * 109.47183 * 29.99290 * 6 5 4 35 35 H 1.09002 * 109.46973 * 149.99811 * 6 5 4 36 36 H 1.09006 * 109.47445 * 59.99758 * 9 7 5 37 37 H 1.08998 * 109.47170 * 300.00061 * 9 7 5 38 38 H 1.07996 * 120.11863 * 359.97438 * 14 13 12 39 39 H 1.07996 * 119.92210 * 180.02562 * 15 14 13 40 40 H 1.08004 * 119.41792 * 180.02562 * 16 15 14 41 41 H 1.08002 * 119.89191 * 180.02562 * 17 16 15 42 42 H 0.96991 * 120.00512 * 94.99107 * 19 2 1 43 43 H 0.96997 * 119.99984 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 7 3.5000 -0.8263 -1.1908 6 6 4.3342 0.2342 -1.7614 7 6 4.0757 -1.8986 -0.6119 8 8 3.3850 -2.7763 -0.1390 9 6 5.5776 -2.0065 -0.5511 10 6 5.9615 -3.2888 0.1413 11 7 6.1329 -4.3777 -0.5237 12 16 6.5550 -5.6182 0.5497 13 6 6.5044 -4.6285 2.0103 14 6 6.7326 -4.8935 3.3535 15 6 6.6122 -3.8892 4.2731 16 6 6.2632 -2.6072 3.8653 17 6 6.0357 -2.3231 2.5546 18 6 6.1443 -3.3377 1.5785 19 7 2.0184 -0.6907 1.1960 20 6 2.1492 -0.0077 2.3757 21 1 1.8926 1.0403 2.4241 22 6 2.6115 -0.6622 3.5091 23 7 2.9237 -1.9395 3.4501 24 14 2.7906 0.2697 5.1181 25 1 1.5229 0.1794 5.8862 26 1 3.8948 -0.3242 5.9138 27 1 3.0965 1.6947 4.8334 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 1.7515 -0.1581 -2.1371 32 1 1.6053 -1.7197 -1.2953 33 1 4.5423 0.0095 -2.8075 34 1 3.8090 1.1867 -1.6919 35 1 5.2721 0.2953 -1.2093 36 1 5.9806 -1.1594 0.0041 37 1 5.9832 -2.0039 -1.5628 38 1 7.0042 -5.8894 3.6708 39 1 6.7895 -4.0922 5.3189 40 1 6.1718 -1.8227 4.6019 41 1 5.7660 -1.3196 2.2603 42 1 2.2490 -1.6318 1.1524 43 1 3.2464 -2.3970 4.2422 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507158344.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:09 Heat of formation + Delta-G solvation = 17.198859 kcal Electronic energy + Delta-G solvation = -27521.891747 eV Core-core repulsion = 23886.248161 eV Total energy + Delta-G solvation = -3635.643586 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.32019 -40.35337 -37.95263 -37.19850 -35.88009 -33.85037 -32.25141 -31.41691 -31.23114 -30.27373 -28.09162 -26.60852 -25.52240 -24.39390 -23.74848 -22.06516 -21.15930 -19.89529 -19.44048 -19.11795 -17.93528 -17.34816 -17.17583 -16.72606 -16.32025 -16.18663 -15.98073 -15.53372 -15.20780 -15.03526 -14.78244 -14.42417 -14.18071 -14.08366 -13.72279 -13.51177 -13.23629 -13.20618 -12.96929 -12.92417 -12.82284 -12.77084 -12.66529 -12.54992 -12.32767 -12.06619 -11.76877 -11.71674 -11.55305 -11.45524 -10.85379 -10.83097 -10.55803 -9.84271 -9.39827 -8.82499 -8.71817 -7.64108 -4.94832 -0.44015 0.31971 0.45566 0.77193 1.11382 1.48260 1.52698 1.57685 1.82966 2.28504 2.67182 2.75953 3.32329 3.54993 3.60448 3.74193 3.96703 4.05948 4.12369 4.20578 4.26842 4.31663 4.41488 4.45426 4.56457 4.58350 4.65385 4.68140 4.75580 4.84730 4.97402 5.01681 5.04075 5.08563 5.13661 5.30728 5.31581 5.51726 5.52730 5.65977 5.66904 5.80369 5.91352 6.49197 6.56976 7.39884 7.59477 8.40070 8.66975 9.53156 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.009798 B = 0.006333 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2857.012229 B = 4420.064678 C = 6530.151227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.147 3.853 3 H 0.049 0.951 4 C 0.117 3.883 5 N -0.606 5.606 6 C 0.072 3.928 7 C 0.521 3.479 8 O -0.564 6.564 9 C -0.070 4.070 10 C 0.185 3.815 11 N -0.464 5.464 12 S 0.166 5.834 13 C -0.146 4.146 14 C -0.095 4.095 15 C -0.072 4.072 16 C -0.124 4.124 17 C -0.013 4.013 18 C -0.139 4.139 19 N -0.734 5.734 20 C -0.245 4.245 21 H 0.060 0.940 22 C -0.052 4.052 23 N -0.928 5.928 24 Si 0.943 3.057 25 H -0.306 1.306 26 H -0.287 1.287 27 H -0.278 1.278 28 H 0.029 0.971 29 H 0.033 0.967 30 H 0.077 0.923 31 H 0.117 0.883 32 H 0.050 0.950 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.132 0.868 37 H 0.141 0.859 38 H 0.157 0.843 39 H 0.164 0.836 40 H 0.127 0.873 41 H 0.115 0.885 42 H 0.386 0.614 43 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.233 2.185 -7.793 13.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.037 3.963 3 H 0.067 0.933 4 C -0.006 4.006 5 N -0.339 5.339 6 C -0.070 4.070 7 C 0.308 3.692 8 O -0.442 6.442 9 C -0.114 4.114 10 C -0.005 4.005 11 N -0.275 5.275 12 S 0.320 5.680 13 C -0.266 4.266 14 C -0.118 4.118 15 C -0.094 4.094 16 C -0.144 4.144 17 C -0.035 4.035 18 C -0.150 4.150 19 N -0.379 5.379 20 C -0.377 4.377 21 H 0.078 0.922 22 C -0.247 4.247 23 N -0.576 5.576 24 Si 0.774 3.226 25 H -0.235 1.235 26 H -0.213 1.213 27 H -0.203 1.203 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.096 0.904 31 H 0.135 0.865 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.149 0.851 37 H 0.159 0.841 38 H 0.175 0.825 39 H 0.182 0.818 40 H 0.145 0.855 41 H 0.133 0.867 42 H 0.222 0.778 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 10.149 0.033 -9.026 13.582 hybrid contribution -0.731 1.498 2.321 2.857 sum 9.418 1.530 -6.705 11.662 Atomic orbital electron populations 1.22270 0.98169 1.00138 1.00909 1.20909 0.92626 0.95614 0.87176 0.93287 1.21756 0.79604 1.00844 0.98416 1.47652 1.06961 1.21128 1.58155 1.22080 0.95489 0.90188 0.99230 1.20370 0.89972 0.81845 0.77041 1.90715 1.65444 1.41705 1.46354 1.20565 0.93390 0.93284 1.04154 1.22128 0.93603 0.94635 0.90151 1.75563 1.21797 1.02468 1.27665 1.84229 1.73894 1.17496 0.92353 1.23627 1.05784 0.96924 1.00240 1.20243 1.01853 1.01237 0.88485 1.21342 0.95534 0.91638 1.00852 1.20816 0.99911 0.98272 0.95416 1.20483 0.93082 0.97623 0.92354 1.20179 1.06707 0.95102 0.93017 1.42899 1.78024 1.11347 1.05591 1.19385 1.35956 0.93518 0.88845 0.92163 1.25226 1.03372 0.96569 0.99538 1.69925 1.50897 1.08838 1.27967 0.85631 0.76563 0.78272 0.82124 1.23454 1.21270 1.20329 0.95134 0.94735 0.90446 0.86493 0.93100 0.90044 0.89827 0.90239 0.85066 0.84129 0.82494 0.81821 0.85515 0.86731 0.77788 0.94587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.47 9.49 71.98 0.68 -4.78 16 2 C 0.15 5.62 3.20 44.99 0.14 5.76 16 3 H 0.05 1.81 8.08 -2.39 -0.02 1.79 16 4 C 0.12 3.74 5.14 86.38 0.44 4.18 16 5 N -0.61 -18.49 2.77 -846.76 -2.35 -20.84 16 6 C 0.07 1.36 10.24 127.77 1.31 2.66 16 7 C 0.52 19.62 6.96 87.65 0.61 20.23 16 8 O -0.56 -27.84 13.35 -3.03 -0.04 -27.88 16 9 C -0.07 -2.12 4.53 29.10 0.13 -1.98 16 10 C 0.18 6.84 5.37 44.74 0.24 7.08 16 11 N -0.46 -17.45 11.84 -46.33 -0.55 -18.00 16 12 S 0.17 5.69 23.86 -56.49 -1.35 4.35 16 13 C -0.15 -5.20 6.71 23.03 0.15 -5.04 16 14 C -0.10 -2.84 10.02 22.05 0.22 -2.62 16 15 C -0.07 -2.06 10.01 22.09 0.22 -1.84 16 16 C -0.12 -4.26 9.92 21.93 0.22 -4.04 16 17 C -0.01 -0.50 9.72 22.49 0.22 -0.28 16 18 C -0.14 -5.36 6.04 -20.20 -0.12 -5.49 16 19 N -0.73 -36.85 4.52 -322.95 -1.46 -38.31 16 20 C -0.24 -13.25 9.93 84.03 0.83 -12.42 16 21 H 0.06 3.20 7.83 -2.91 -0.02 3.18 16 22 C -0.05 -2.87 5.50 84.86 0.47 -2.40 16 23 N -0.93 -53.85 13.06 21.65 0.28 -53.57 16 24 Si 0.94 44.42 29.55 68.60 2.03 46.45 16 25 H -0.31 -14.94 7.11 99.48 0.71 -14.23 16 26 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 27 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 28 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 29 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 31 H 0.12 2.61 8.07 -2.38 -0.02 2.59 16 32 H 0.05 1.92 7.42 -2.39 -0.02 1.90 16 33 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.08 1.40 8.07 -2.39 -0.02 1.38 16 35 H 0.08 1.34 6.44 -2.39 -0.02 1.32 16 36 H 0.13 3.44 6.80 -2.38 -0.02 3.42 16 37 H 0.14 3.23 8.11 -2.39 -0.02 3.21 16 38 H 0.16 3.56 8.06 -2.91 -0.02 3.53 16 39 H 0.16 3.43 8.06 -2.91 -0.02 3.40 16 40 H 0.13 4.17 8.06 -2.91 -0.02 4.15 16 41 H 0.11 4.58 7.64 -2.91 -0.02 4.56 16 42 H 0.39 21.72 5.02 -92.71 -0.47 21.26 16 43 H 0.24 13.99 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -75.73 371.59 2.90 -72.83 By element: Atomic # 1 Polarization: 35.41 SS G_CDS: 0.57 Total: 35.97 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: 5.77 Total: -0.99 kcal Atomic # 7 Polarization: -126.65 SS G_CDS: -4.08 Total: -130.72 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.04 Total: -27.88 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: 5.69 SS G_CDS: -1.35 Total: 4.35 kcal Total: -75.73 2.90 -72.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507158344.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.029 kcal (2) G-P(sol) polarization free energy of solvation -75.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds