Wall clock time and date at job start Tue Mar 31 2020 17:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47107 * 2 1 4 4 N 1.46498 * 109.47327 * 180.02562 * 3 2 1 5 5 C 1.36942 * 119.99719 * 275.30925 * 4 3 2 6 6 H 1.07999 * 120.00096 * 37.58081 * 5 4 3 7 7 C 1.38813 * 119.99469 * 217.57763 * 5 4 3 8 8 N 1.31611 * 120.00593 * 21.42817 * 7 5 4 9 9 Si 1.86800 * 119.99650 * 201.42171 * 7 5 4 10 10 H 1.48506 * 109.47248 * 60.00202 * 9 7 5 11 11 H 1.48500 * 109.47145 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47410 * 300.00433 * 9 7 5 13 13 C 1.46495 * 120.00057 * 95.30823 * 4 3 2 14 14 C 1.53004 * 109.47073 * 270.00176 * 13 4 3 15 15 N 1.46502 * 109.46847 * 180.02562 * 14 13 4 16 16 C 1.34772 * 119.99640 * 180.27753 * 15 14 13 17 17 O 1.21599 * 120.00265 * 359.71835 * 16 15 14 18 18 C 1.47563 * 120.00216 * 179.72069 * 16 15 14 19 19 C 1.40126 * 120.58484 * 359.97438 * 18 16 15 20 20 N 1.30611 * 121.17150 * 179.97438 * 19 18 16 21 21 C 1.34917 * 122.44662 * 359.97438 * 20 19 18 22 22 C 1.40617 * 128.45870 * 179.97438 * 21 20 19 23 23 C 1.32285 * 115.90562 * 180.02562 * 22 21 20 24 24 S 1.75505 * 110.84139 * 359.97438 * 23 22 21 25 25 C 1.40097 * 119.27152 * 0.02562 * 21 20 19 26 26 C 1.39372 * 119.75000 * 359.74451 * 25 21 20 27 27 H 1.09002 * 109.47486 * 299.99617 * 1 2 3 28 28 H 1.09001 * 109.47382 * 60.00520 * 1 2 3 29 29 H 1.09006 * 109.47273 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47282 * 239.99869 * 2 1 3 31 31 H 1.09007 * 109.47068 * 119.99791 * 2 1 3 32 32 H 1.09001 * 109.47156 * 59.99792 * 3 2 1 33 33 H 1.09003 * 109.47275 * 300.00232 * 3 2 1 34 34 H 0.96991 * 120.00571 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.47009 * 150.00205 * 13 4 3 36 36 H 1.09000 * 109.47057 * 30.00219 * 13 4 3 37 37 H 1.08999 * 109.47180 * 60.00133 * 14 13 4 38 38 H 1.09003 * 109.46742 * 300.00150 * 14 13 4 39 39 H 0.96995 * 120.00260 * 359.97438 * 15 14 13 40 40 H 1.07997 * 119.41320 * 359.95163 * 19 18 16 41 41 H 1.07997 * 122.04535 * 359.97438 * 22 21 20 42 42 H 1.08000 * 124.57531 * 179.97438 * 23 22 21 43 43 H 1.08004 * 120.72821 * 180.25737 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1901 1.3327 1.1800 6 1 3.8185 0.6870 1.9619 7 6 5.3623 2.0512 1.3715 8 7 5.6024 3.1239 0.6479 9 14 6.5988 1.4955 2.6567 10 1 7.0675 0.1242 2.3323 11 1 7.7563 2.4258 2.6647 12 1 5.9555 1.4950 3.9951 13 6 4.2369 1.5601 -1.2641 14 6 4.4917 0.1648 -1.8377 15 7 5.2242 0.2824 -3.1010 16 6 5.5560 -0.8254 -3.7931 17 8 5.2519 -1.9228 -3.3665 18 6 6.2884 -0.7068 -5.0686 19 6 6.6446 0.5515 -5.5719 20 7 7.2933 0.6698 -6.6993 21 6 7.6571 -0.3972 -7.4405 22 6 8.3518 -0.4170 -8.6629 23 6 8.5798 -1.6136 -9.1788 24 16 7.9244 -2.8734 -8.1474 25 6 7.3317 -1.6846 -6.9939 26 6 6.6440 -1.8465 -5.7925 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 6.4216 3.6257 0.7815 35 1 5.1894 2.0597 -1.0871 36 1 3.6475 2.1422 -1.9726 37 1 3.5392 -0.3348 -2.0147 38 1 5.0810 -0.4172 -1.1291 39 1 5.4665 1.1577 -3.4415 40 1 6.3776 1.4393 -5.0179 41 1 8.6785 0.4892 -9.1511 42 1 9.0990 -1.7913 -10.1090 43 1 6.3887 -2.8318 -5.4312 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567427960.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:28 Heat of formation + Delta-G solvation = 35.206172 kcal Electronic energy + Delta-G solvation = -25243.130158 eV Core-core repulsion = 21608.267428 eV Total energy + Delta-G solvation = -3634.862730 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.85637 -39.10877 -36.54218 -35.92316 -34.40830 -32.91046 -32.73440 -31.02641 -30.25002 -28.04790 -25.58976 -25.29079 -24.14249 -23.23127 -21.89981 -21.01539 -20.53732 -20.10795 -18.63743 -17.23446 -17.01321 -16.48844 -16.37244 -15.36778 -15.31127 -14.96120 -14.53886 -14.45053 -14.27502 -14.06437 -13.84511 -13.35249 -13.14946 -12.98103 -12.86603 -12.81742 -12.68039 -11.99842 -11.59561 -11.54010 -11.45669 -11.21074 -10.96130 -10.74754 -10.72610 -10.49877 -10.39208 -10.20259 -10.06369 -9.93085 -9.72409 -9.52540 -9.08701 -8.64415 -8.49421 -8.35200 -6.65342 -5.86577 -3.45390 -0.09880 0.76595 1.01608 1.48264 1.62731 2.93581 3.30949 3.37543 3.40520 3.44467 3.66007 3.74118 4.30730 4.43467 4.51753 4.63726 4.73635 4.86362 5.16828 5.24396 5.35153 5.44234 5.51502 5.64662 5.67383 5.74265 5.78528 5.98708 6.07532 6.12033 6.18793 6.26503 6.39310 6.50162 6.60109 6.63793 6.74745 6.95270 6.96613 7.16094 7.48248 7.49064 7.75909 7.77865 8.37548 8.45412 9.11468 9.73297 10.31015 11.13614 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014185 B = 0.002598 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.449964 B =10774.835836 C =11756.970118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.147 3.853 4 N -0.579 5.579 5 C -0.262 4.262 6 H 0.062 0.938 7 C 0.015 3.985 8 N -0.887 5.887 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.280 1.280 13 C 0.136 3.864 14 C 0.096 3.904 15 N -0.709 5.709 16 C 0.557 3.443 17 O -0.540 6.540 18 C -0.170 4.170 19 C 0.159 3.841 20 N -0.459 5.459 21 C 0.140 3.860 22 C -0.117 4.117 23 C -0.169 4.169 24 S 0.120 5.880 25 C -0.210 4.210 26 C 0.026 3.974 27 H 0.049 0.951 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.046 0.954 33 H 0.034 0.966 34 H 0.256 0.744 35 H 0.099 0.901 36 H 0.030 0.970 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.397 0.603 40 H 0.170 0.830 41 H 0.155 0.845 42 H 0.178 0.822 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.062 -6.981 -18.980 20.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.298 5.298 5 C -0.392 4.392 6 H 0.079 0.921 7 C -0.186 4.186 8 N -0.529 5.529 9 Si 0.725 3.275 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.206 1.206 13 C 0.009 3.991 14 C -0.029 4.029 15 N -0.360 5.360 16 C 0.342 3.658 17 O -0.418 6.418 18 C -0.179 4.179 19 C -0.013 4.013 20 N -0.168 5.168 21 C 0.007 3.993 22 C -0.148 4.148 23 C -0.305 4.305 24 S 0.383 5.617 25 C -0.327 4.327 26 C -0.004 4.004 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.117 0.883 36 H 0.048 0.952 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.232 0.768 40 H 0.187 0.813 41 H 0.172 0.828 42 H 0.195 0.805 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.214 -8.362 -19.126 21.120 hybrid contribution 0.681 0.782 0.857 1.345 sum 3.895 -7.580 -18.269 20.159 Atomic orbital electron populations 1.21723 0.97333 1.00409 1.01007 1.22190 0.93823 1.00939 1.01579 1.20944 0.85003 0.92970 0.98965 1.43587 0.99446 1.84784 1.02023 1.18976 1.05716 1.20522 0.93989 0.92085 1.25175 1.00793 0.94501 0.98106 1.69971 1.25737 1.14671 1.42481 0.86477 0.81015 0.78315 0.81650 1.20771 1.21559 1.20616 1.21075 1.00469 0.91047 0.86532 1.22578 0.94903 1.03134 0.82255 1.46064 1.57350 1.08110 1.24453 1.17823 0.79567 0.85087 0.83322 1.90787 1.55029 1.26325 1.69679 1.21066 1.04002 0.94811 0.97990 1.22955 0.91121 0.96413 0.90794 1.67598 1.11354 1.31746 1.06066 1.19269 0.97253 0.87770 0.95052 1.19660 1.01252 0.99335 0.94521 1.25423 1.05170 0.95549 1.04399 1.84341 1.56402 1.06968 1.13956 1.23551 1.08571 0.98617 1.01962 1.20997 0.90074 0.99953 0.89366 0.93199 0.93462 0.93815 0.92938 0.92341 0.93543 0.94722 0.93407 0.88298 0.95162 0.92639 0.91393 0.76809 0.81306 0.82759 0.80485 0.82951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.91 37.16 0.37 -1.77 16 2 C -0.15 -2.61 6.23 -26.73 -0.17 -2.78 16 3 C 0.15 2.99 5.72 -4.04 -0.02 2.97 16 4 N -0.58 -13.62 2.43 -173.24 -0.42 -14.04 16 5 C -0.26 -6.88 9.45 -15.06 -0.14 -7.02 16 6 H 0.06 1.62 7.92 -52.49 -0.42 1.20 16 7 C 0.01 0.39 4.95 -17.43 -0.09 0.31 16 8 N -0.89 -24.21 11.47 55.49 0.64 -23.57 16 9 Si 0.90 21.12 29.60 -169.99 -5.03 16.09 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 13 C 0.14 2.91 5.45 -4.04 -0.02 2.89 16 14 C 0.10 1.87 6.00 -4.04 -0.02 1.85 16 15 N -0.71 -11.37 5.51 -61.33 -0.34 -11.71 16 16 C 0.56 9.18 7.77 -12.46 -0.10 9.08 16 17 O -0.54 -10.75 16.41 5.28 0.09 -10.67 16 18 C -0.17 -2.32 5.89 -104.87 -0.62 -2.94 16 19 C 0.16 1.96 10.69 -17.36 -0.19 1.77 16 20 N -0.46 -5.95 10.39 -11.00 -0.11 -6.07 16 21 C 0.14 1.68 6.97 -84.92 -0.59 1.09 16 22 C -0.12 -1.05 10.16 -40.61 -0.41 -1.46 16 23 C -0.17 -1.18 11.08 28.81 0.32 -0.86 16 24 S 0.12 1.03 23.29 -107.50 -2.50 -1.48 16 25 C -0.21 -2.44 6.49 -38.46 -0.25 -2.69 16 26 C 0.03 0.34 9.73 -38.64 -0.38 -0.04 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.96 6.64 -51.93 -0.34 0.62 16 31 H 0.06 1.13 8.14 -51.92 -0.42 0.70 16 32 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 33 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 34 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 35 H 0.10 2.38 5.52 -51.93 -0.29 2.09 16 36 H 0.03 0.60 7.86 -51.93 -0.41 0.19 16 37 H 0.06 1.10 6.64 -51.93 -0.34 0.76 16 38 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 39 H 0.40 5.26 6.53 -40.82 -0.27 4.99 16 40 H 0.17 1.66 6.41 -52.49 -0.34 1.33 16 41 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 42 H 0.18 0.64 8.06 -52.49 -0.42 0.22 16 43 H 0.15 1.86 7.72 -52.48 -0.41 1.46 16 LS Contribution 373.20 15.07 5.62 5.62 Total: -1.00 -30.99 373.20 -10.10 -41.09 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -5.73 Total: 4.35 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -2.31 Total: 0.39 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: -0.24 Total: -55.39 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.50 Total: -1.48 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.99 -10.10 -41.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567427960.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.294 kcal (2) G-P(sol) polarization free energy of solvation -30.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds