Wall clock time and date at job start Tue Mar 31 2020 17:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47107 * 2 1 4 4 N 1.46498 * 109.47327 * 180.02562 * 3 2 1 5 5 C 1.36942 * 119.99719 * 275.30925 * 4 3 2 6 6 H 1.07999 * 120.00096 * 37.58081 * 5 4 3 7 7 C 1.38813 * 119.99469 * 217.57763 * 5 4 3 8 8 N 1.31611 * 120.00593 * 21.42817 * 7 5 4 9 9 Si 1.86800 * 119.99650 * 201.42171 * 7 5 4 10 10 H 1.48506 * 109.47248 * 60.00202 * 9 7 5 11 11 H 1.48500 * 109.47145 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47410 * 300.00433 * 9 7 5 13 13 C 1.46495 * 120.00057 * 95.30823 * 4 3 2 14 14 C 1.53004 * 109.47073 * 270.00176 * 13 4 3 15 15 N 1.46502 * 109.46847 * 180.02562 * 14 13 4 16 16 C 1.34772 * 119.99640 * 180.27753 * 15 14 13 17 17 O 1.21599 * 120.00265 * 359.71835 * 16 15 14 18 18 C 1.47563 * 120.00216 * 179.72069 * 16 15 14 19 19 C 1.40126 * 120.58484 * 359.97438 * 18 16 15 20 20 N 1.30611 * 121.17150 * 179.97438 * 19 18 16 21 21 C 1.34917 * 122.44662 * 359.97438 * 20 19 18 22 22 C 1.40617 * 128.45870 * 179.97438 * 21 20 19 23 23 C 1.32285 * 115.90562 * 180.02562 * 22 21 20 24 24 S 1.75505 * 110.84139 * 359.97438 * 23 22 21 25 25 C 1.40097 * 119.27152 * 0.02562 * 21 20 19 26 26 C 1.39372 * 119.75000 * 359.74451 * 25 21 20 27 27 H 1.09002 * 109.47486 * 299.99617 * 1 2 3 28 28 H 1.09001 * 109.47382 * 60.00520 * 1 2 3 29 29 H 1.09006 * 109.47273 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47282 * 239.99869 * 2 1 3 31 31 H 1.09007 * 109.47068 * 119.99791 * 2 1 3 32 32 H 1.09001 * 109.47156 * 59.99792 * 3 2 1 33 33 H 1.09003 * 109.47275 * 300.00232 * 3 2 1 34 34 H 0.96991 * 120.00571 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.47009 * 150.00205 * 13 4 3 36 36 H 1.09000 * 109.47057 * 30.00219 * 13 4 3 37 37 H 1.08999 * 109.47180 * 60.00133 * 14 13 4 38 38 H 1.09003 * 109.46742 * 300.00150 * 14 13 4 39 39 H 0.96995 * 120.00260 * 359.97438 * 15 14 13 40 40 H 1.07997 * 119.41320 * 359.95163 * 19 18 16 41 41 H 1.07997 * 122.04535 * 359.97438 * 22 21 20 42 42 H 1.08000 * 124.57531 * 179.97438 * 23 22 21 43 43 H 1.08004 * 120.72821 * 180.25737 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1901 1.3327 1.1800 6 1 3.8185 0.6870 1.9619 7 6 5.3623 2.0512 1.3715 8 7 5.6024 3.1239 0.6479 9 14 6.5988 1.4955 2.6567 10 1 7.0675 0.1242 2.3323 11 1 7.7563 2.4258 2.6647 12 1 5.9555 1.4950 3.9951 13 6 4.2369 1.5601 -1.2641 14 6 4.4917 0.1648 -1.8377 15 7 5.2242 0.2824 -3.1010 16 6 5.5560 -0.8254 -3.7931 17 8 5.2519 -1.9228 -3.3665 18 6 6.2884 -0.7068 -5.0686 19 6 6.6446 0.5515 -5.5719 20 7 7.2933 0.6698 -6.6993 21 6 7.6571 -0.3972 -7.4405 22 6 8.3518 -0.4170 -8.6629 23 6 8.5798 -1.6136 -9.1788 24 16 7.9244 -2.8734 -8.1474 25 6 7.3317 -1.6846 -6.9939 26 6 6.6440 -1.8465 -5.7925 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 6.4216 3.6257 0.7815 35 1 5.1894 2.0597 -1.0871 36 1 3.6475 2.1422 -1.9726 37 1 3.5392 -0.3348 -2.0147 38 1 5.0810 -0.4172 -1.1291 39 1 5.4665 1.1577 -3.4415 40 1 6.3776 1.4393 -5.0179 41 1 8.6785 0.4892 -9.1511 42 1 9.0990 -1.7913 -10.1090 43 1 6.3887 -2.8318 -5.4312 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567427960.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:27 Heat of formation + Delta-G solvation = 16.694125 kcal Electronic energy + Delta-G solvation = -25243.932901 eV Core-core repulsion = 21608.267428 eV Total energy + Delta-G solvation = -3635.665473 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.84569 -40.37013 -38.25117 -36.75321 -35.87464 -34.60070 -33.70736 -32.69778 -31.37189 -29.51135 -27.33058 -26.32066 -25.29602 -24.53703 -22.90171 -22.56195 -21.88755 -21.51162 -19.74388 -18.59286 -18.18526 -17.76596 -17.22126 -17.00513 -16.68276 -16.50579 -15.94599 -15.74830 -15.43119 -15.29221 -15.03040 -14.69879 -14.39590 -14.32011 -14.24076 -14.02555 -13.65090 -13.33191 -13.07806 -12.91080 -12.81714 -12.63044 -12.51748 -12.24003 -12.12050 -12.03542 -11.86457 -11.69650 -11.63718 -11.45780 -11.25351 -10.61706 -10.52771 -10.19186 -9.83838 -9.08511 -8.58300 -7.85382 -5.48044 -0.98695 -0.15838 0.27017 0.79905 0.82408 1.44507 1.48302 1.53951 1.80562 2.02158 2.50285 2.63171 2.92851 3.21821 3.44776 3.50602 3.61827 3.80687 3.90558 4.01513 4.22559 4.32266 4.38054 4.39626 4.53352 4.63745 4.68429 4.72646 4.75843 4.86628 4.89412 5.00625 5.03671 5.15821 5.23401 5.24682 5.26928 5.33424 5.44885 5.63550 5.66359 5.74489 6.41399 6.48170 6.58397 7.06416 7.16481 7.83270 8.35304 9.10245 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014185 B = 0.002598 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.449964 B =10774.835836 C =11756.970118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.146 3.854 4 N -0.596 5.596 5 C -0.270 4.270 6 H 0.051 0.949 7 C -0.026 4.026 8 N -0.908 5.908 9 Si 0.949 3.051 10 H -0.286 1.286 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.143 3.857 14 C 0.119 3.881 15 N -0.702 5.702 16 C 0.562 3.438 17 O -0.580 6.580 18 C -0.189 4.189 19 C 0.163 3.837 20 N -0.477 5.477 21 C 0.133 3.867 22 C -0.142 4.142 23 C -0.137 4.137 24 S 0.147 5.853 25 C -0.235 4.235 26 C 0.026 3.974 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.046 0.954 31 H 0.038 0.962 32 H 0.035 0.965 33 H 0.050 0.950 34 H 0.254 0.746 35 H 0.076 0.924 36 H 0.047 0.953 37 H 0.053 0.947 38 H 0.034 0.966 39 H 0.412 0.588 40 H 0.188 0.812 41 H 0.173 0.827 42 H 0.220 0.780 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.531 -7.431 -21.423 22.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.175 4.175 3 C 0.020 3.980 4 N -0.317 5.317 5 C -0.401 4.401 6 H 0.069 0.931 7 C -0.225 4.225 8 N -0.552 5.552 9 Si 0.777 3.223 10 H -0.213 1.213 11 H -0.214 1.214 12 H -0.201 1.201 13 C 0.016 3.984 14 C -0.007 4.007 15 N -0.353 5.353 16 C 0.349 3.651 17 O -0.462 6.462 18 C -0.198 4.198 19 C -0.009 4.009 20 N -0.186 5.186 21 C -0.001 4.001 22 C -0.171 4.171 23 C -0.274 4.274 24 S 0.411 5.589 25 C -0.352 4.352 26 C -0.004 4.004 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.052 0.948 39 H 0.249 0.751 40 H 0.204 0.796 41 H 0.190 0.810 42 H 0.237 0.763 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.675 -8.803 -21.590 23.604 hybrid contribution 0.574 0.833 1.447 1.766 sum 4.249 -7.969 -20.143 22.075 Atomic orbital electron populations 1.21656 0.94315 1.01749 1.01992 1.22021 0.96379 0.98811 1.00294 1.21052 0.83311 0.94501 0.99119 1.43823 1.00858 1.85049 1.01946 1.19102 1.06261 1.19947 0.94766 0.93117 1.25721 1.02054 0.94717 0.99959 1.70059 1.25939 1.15390 1.43764 0.85651 0.79206 0.77428 0.80021 1.21292 1.21425 1.20115 1.20949 0.99407 0.91763 0.86267 1.22035 0.94444 1.01308 0.82909 1.45845 1.57057 1.09098 1.23331 1.18170 0.78803 0.84230 0.83876 1.90757 1.56756 1.27729 1.70910 1.20741 1.05847 0.96013 0.97198 1.23164 0.90564 0.96382 0.90796 1.67649 1.12094 1.32438 1.06398 1.19844 0.96837 0.87609 0.95827 1.19868 1.02337 1.00967 0.93975 1.25971 1.02641 0.94073 1.04671 1.84332 1.55437 1.06348 1.12819 1.23766 1.09056 1.00033 1.02301 1.21068 0.89808 0.99636 0.89859 0.92623 0.92074 0.92323 0.93544 0.94304 0.94658 0.93145 0.93653 0.90670 0.93419 0.92868 0.94792 0.75073 0.79570 0.80967 0.76336 0.83160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.82 9.91 71.98 0.71 -3.11 16 2 C -0.14 -4.82 6.23 30.59 0.19 -4.63 16 3 C 0.15 5.90 5.72 86.38 0.49 6.39 16 4 N -0.60 -28.54 2.43 -702.00 -1.71 -30.24 16 5 C -0.27 -14.50 9.45 84.03 0.79 -13.70 16 6 H 0.05 2.77 7.92 -2.91 -0.02 2.75 16 7 C -0.03 -1.41 4.95 84.86 0.42 -0.99 16 8 N -0.91 -50.34 11.47 21.65 0.25 -50.09 16 9 Si 0.95 44.14 29.60 68.60 2.03 46.17 16 10 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 11 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 12 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 13 C 0.14 6.21 5.45 86.38 0.47 6.69 16 14 C 0.12 4.77 6.00 86.38 0.52 5.29 16 15 N -0.70 -22.95 5.51 -466.22 -2.57 -25.52 16 16 C 0.56 19.05 7.77 86.70 0.67 19.72 16 17 O -0.58 -23.99 16.41 -4.03 -0.07 -24.06 16 18 C -0.19 -5.25 5.89 -20.03 -0.12 -5.37 16 19 C 0.16 3.98 10.69 85.33 0.91 4.89 16 20 N -0.48 -12.00 10.39 -188.73 -1.96 -13.97 16 21 C 0.13 3.00 6.97 39.70 0.28 3.28 16 22 C -0.14 -2.14 10.16 21.79 0.22 -1.92 16 23 C -0.14 -1.38 11.08 66.76 0.74 -0.64 16 24 S 0.15 2.14 23.29 -56.49 -1.32 0.82 16 25 C -0.23 -5.22 6.49 22.99 0.15 -5.07 16 26 C 0.03 0.68 9.73 22.88 0.22 0.90 16 27 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.06 1.51 8.14 -2.39 -0.02 1.50 16 29 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 30 H 0.05 1.70 6.64 -2.39 -0.02 1.68 16 31 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.03 1.49 8.08 -2.39 -0.02 1.47 16 33 H 0.05 1.87 7.83 -2.39 -0.02 1.85 16 34 H 0.25 13.66 8.31 -92.71 -0.77 12.89 16 35 H 0.08 3.69 5.52 -2.39 -0.01 3.68 16 36 H 0.05 1.87 7.86 -2.39 -0.02 1.85 16 37 H 0.05 2.16 6.64 -2.39 -0.02 2.14 16 38 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.41 10.94 6.53 -92.71 -0.61 10.33 16 40 H 0.19 3.58 6.41 -2.91 -0.02 3.57 16 41 H 0.17 1.94 8.06 -2.91 -0.02 1.91 16 42 H 0.22 0.34 8.06 -2.91 -0.02 0.31 16 43 H 0.15 3.80 7.72 -2.91 -0.02 3.78 16 Total: -1.00 -68.40 373.20 1.77 -66.63 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.44 Total: 18.53 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: 6.68 Total: 11.72 kcal Atomic # 7 Polarization: -113.83 SS G_CDS: -5.99 Total: -119.82 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.07 Total: -24.06 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: 2.14 SS G_CDS: -1.32 Total: 0.82 kcal Total: -68.40 1.77 -66.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567427960.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.323 kcal (2) G-P(sol) polarization free energy of solvation -68.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds