Wall clock time and date at job start Tue Mar 31 2020 17:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46858 * 2 1 4 4 C 1.52995 * 109.46977 * 120.00143 * 2 1 3 5 5 H 1.09003 * 109.47022 * 300.00127 * 4 2 1 6 6 C 1.52998 * 109.47443 * 60.00215 * 4 2 1 7 7 N 1.46500 * 109.47304 * 174.99839 * 6 4 2 8 8 C 1.34776 * 119.99630 * 179.97438 * 7 6 4 9 9 O 1.21609 * 120.00569 * 0.02562 * 8 7 6 10 10 C 1.47368 * 119.99332 * 179.97438 * 8 7 6 11 11 C 1.38762 * 120.55890 * 0.02562 * 10 8 7 12 12 N 1.31899 * 121.12274 * 180.02562 * 11 10 8 13 13 C 1.31668 * 122.21937 * 359.97438 * 12 11 10 14 14 C 1.39288 * 121.14159 * 0.02562 * 13 12 11 15 15 S 1.75887 * 131.39886 * 179.97438 * 14 13 12 16 16 C 1.75555 * 91.52373 * 179.40705 * 15 14 13 17 17 C 1.32485 * 110.79518 * 0.47172 * 16 15 14 18 18 C 1.40013 * 115.77302 * 359.49434 * 17 16 15 19 19 N 1.46498 * 109.47120 * 180.02562 * 4 2 1 20 20 C 1.36935 * 120.00239 * 84.99640 * 19 4 2 21 21 H 1.08004 * 120.00069 * 0.02562 * 20 19 4 22 22 C 1.38811 * 120.00368 * 180.02562 * 20 19 4 23 23 N 1.31624 * 119.99540 * 359.72375 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47364 * 179.72253 * 24 22 20 26 26 H 1.48508 * 109.46883 * 299.72375 * 24 22 20 27 27 H 1.48497 * 109.46870 * 59.72186 * 24 22 20 28 28 H 1.09003 * 109.47348 * 299.99929 * 1 2 3 29 29 H 1.09004 * 109.47447 * 60.00101 * 1 2 3 30 30 H 1.08999 * 109.47360 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46986 * 240.00225 * 2 1 3 32 32 H 1.08994 * 109.47070 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47532 * 300.00174 * 3 2 1 34 34 H 1.09003 * 109.47082 * 59.99909 * 3 2 1 35 35 H 1.09008 * 109.46958 * 295.00113 * 6 4 2 36 36 H 1.08993 * 109.47007 * 54.99576 * 6 4 2 37 37 H 0.96999 * 119.99793 * 0.02562 * 7 6 4 38 38 H 1.08001 * 119.43471 * 359.97438 * 11 10 8 39 39 H 1.08005 * 119.42822 * 179.97438 * 13 12 11 40 40 H 1.07997 * 124.60737 * 179.97438 * 16 15 14 41 41 H 1.07994 * 122.11493 * 179.47238 * 17 16 15 42 42 H 0.97004 * 119.99747 * 265.00379 * 19 4 2 43 43 H 0.97000 * 120.00481 * 0.27542 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 1.5301 -2.1638 1.2492 7 7 2.1142 -2.8883 2.3806 8 6 1.8053 -4.1845 2.5825 9 8 1.0420 -4.7529 1.8254 10 6 2.3934 -4.9134 3.7203 11 6 3.2660 -4.2764 4.5911 12 7 3.7991 -4.9182 5.6127 13 6 3.5361 -6.1842 5.8610 14 6 2.6729 -6.9137 5.0469 15 16 2.1387 -8.5877 5.1234 16 6 1.1306 -8.3800 3.7012 17 6 1.2258 -7.1441 3.2336 18 6 2.0698 -6.2859 3.9488 19 7 3.5050 -0.7207 1.2495 20 6 4.1892 0.3542 1.7510 21 1 3.6488 1.2015 2.1466 22 6 5.5773 0.3549 1.7508 23 7 6.2358 -0.6800 1.2736 24 14 6.5107 1.8210 2.4355 25 1 7.9708 1.5730 2.3266 26 1 6.1563 3.0384 1.6624 27 1 6.1470 2.0171 3.8618 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 0.4437 -2.1651 1.3387 36 1 1.8184 -2.6510 0.3178 37 1 2.7227 -2.4348 2.9848 38 1 3.5134 -3.2377 4.4291 39 1 3.9983 -6.6655 6.7103 40 1 0.5222 -9.1567 3.2619 41 1 0.6867 -6.8192 2.3560 42 1 3.9903 -1.4819 0.8944 43 1 5.7512 -1.4415 0.9184 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568461009.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:34 Heat of formation + Delta-G solvation = 26.933254 kcal Electronic energy + Delta-G solvation = -26067.805656 eV Core-core repulsion = 22432.584185 eV Total energy + Delta-G solvation = -3635.221471 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 5.64 seconds Orbital eigenvalues (eV) -40.91059 -39.08072 -37.36692 -36.49052 -34.07637 -33.47421 -31.91206 -30.50084 -30.20410 -27.98705 -26.15405 -24.81248 -24.61303 -23.43471 -22.07682 -21.22531 -20.62852 -19.53796 -18.48819 -17.57658 -17.33369 -16.53270 -16.20157 -15.55178 -15.36571 -14.86744 -14.61443 -14.39643 -14.24661 -14.14448 -13.74698 -13.68665 -13.46634 -13.03861 -12.85348 -12.41290 -12.28651 -12.20668 -12.00742 -11.69435 -11.26750 -11.17742 -10.98084 -10.81349 -10.50675 -10.24108 -10.17991 -10.10119 -10.06763 -9.92318 -9.53815 -9.28215 -9.24222 -8.96189 -8.83044 -8.09155 -7.13932 -6.15211 -3.17885 0.07416 0.58542 1.16500 1.59868 2.14188 2.83560 3.28907 3.48759 3.50583 3.68515 3.71705 4.14551 4.32194 4.52197 4.60182 4.64878 4.90586 5.07921 5.13178 5.22974 5.28442 5.40236 5.46845 5.54442 5.68177 5.68317 5.76183 5.87175 5.90817 6.03934 6.11746 6.13760 6.23792 6.26879 6.33654 6.43121 6.52382 6.55142 6.76653 6.96356 7.23670 7.62688 7.69756 7.75191 8.30521 8.68066 9.11881 9.98927 10.13383 11.31367 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013055 B = 0.003329 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.195273 B = 8409.475175 C =10155.127671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.138 4.138 4 C 0.175 3.825 5 H 0.056 0.944 6 C 0.112 3.888 7 N -0.705 5.705 8 C 0.561 3.439 9 O -0.544 6.544 10 C -0.147 4.147 11 C 0.133 3.867 12 N -0.470 5.470 13 C 0.178 3.822 14 C -0.218 4.218 15 S 0.112 5.888 16 C -0.175 4.175 17 C -0.120 4.120 18 C 0.016 3.984 19 N -0.733 5.733 20 C -0.330 4.330 21 H 0.068 0.932 22 C -0.040 4.040 23 N -0.939 5.939 24 Si 1.074 2.926 25 H -0.286 1.286 26 H -0.296 1.296 27 H -0.295 1.295 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.031 0.969 34 H 0.041 0.959 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.409 0.591 38 H 0.169 0.831 39 H 0.165 0.835 40 H 0.174 0.826 41 H 0.168 0.832 42 H 0.368 0.632 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.033 -12.254 6.400 17.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.130 4.130 3 C -0.196 4.196 4 C 0.064 3.936 5 H 0.074 0.926 6 C -0.012 4.012 7 N -0.356 5.356 8 C 0.346 3.654 9 O -0.424 6.424 10 C -0.154 4.154 11 C -0.020 4.020 12 N -0.179 5.179 13 C 0.010 3.990 14 C -0.335 4.335 15 S 0.374 5.626 16 C -0.310 4.310 17 C -0.150 4.150 18 C -0.001 4.001 19 N -0.376 5.376 20 C -0.461 4.461 21 H 0.086 0.914 22 C -0.238 4.238 23 N -0.584 5.584 24 Si 0.905 3.095 25 H -0.211 1.211 26 H -0.223 1.223 27 H -0.222 1.222 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.247 0.753 38 H 0.186 0.814 39 H 0.183 0.817 40 H 0.192 0.808 41 H 0.185 0.815 42 H 0.201 0.799 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.296 -12.538 7.698 17.404 hybrid contribution -1.987 0.174 -1.744 2.650 sum -11.284 -12.364 5.954 17.767 Atomic orbital electron populations 1.21945 0.96751 1.00956 1.01063 1.21711 0.93620 0.97926 0.99760 1.21812 1.04285 0.94453 0.99020 1.20494 0.85868 0.90904 0.96289 0.92638 1.21826 0.97587 0.93276 0.88493 1.45940 1.48239 1.10456 1.30981 1.17806 0.81354 0.81999 0.84196 1.90691 1.36660 1.67807 1.47236 1.20880 1.02108 0.93488 0.98915 1.22931 0.90311 1.00270 0.88525 1.67787 1.22817 1.08477 1.18777 1.22431 0.91141 0.89243 0.96184 1.23851 1.06984 0.99977 1.02698 1.84106 1.43876 1.05560 1.29066 1.25567 1.04376 1.00952 1.00143 1.20298 1.00073 0.92093 1.02501 1.18256 0.95327 0.93112 0.93380 1.42482 0.99381 1.20983 1.74725 1.19974 0.91560 0.97364 1.37193 0.91427 1.25686 0.93401 1.03655 1.01100 1.70898 1.37390 1.07016 1.43101 0.83314 0.76451 0.74178 0.75524 1.21137 1.22299 1.22221 0.93111 0.93457 0.93071 0.92057 0.89439 0.94986 0.94011 0.91143 0.91690 0.75321 0.81390 0.81744 0.80849 0.81508 0.79892 0.93348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 8.84 37.16 0.33 -1.71 16 2 C -0.11 -1.80 2.69 -90.62 -0.24 -2.05 16 3 C -0.14 -2.47 8.26 37.16 0.31 -2.16 16 4 C 0.17 3.11 2.18 -67.93 -0.15 2.96 16 5 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 6 C 0.11 1.82 4.73 -4.04 -0.02 1.80 16 7 N -0.70 -11.36 5.34 -61.40 -0.33 -11.68 16 8 C 0.56 9.26 7.77 -12.55 -0.10 9.16 16 9 O -0.54 -9.93 14.47 5.27 0.08 -9.86 16 10 C -0.15 -2.22 5.94 -104.20 -0.62 -2.84 16 11 C 0.13 1.94 10.67 -17.33 -0.18 1.76 16 12 N -0.47 -6.69 10.32 -12.88 -0.13 -6.83 16 13 C 0.18 2.12 11.20 -17.23 -0.19 1.92 16 14 C -0.22 -2.65 6.52 -38.48 -0.25 -2.90 16 15 S 0.11 1.04 23.29 -107.50 -2.50 -1.46 16 16 C -0.17 -1.69 11.10 28.82 0.32 -1.37 16 17 C -0.12 -1.52 9.43 -40.83 -0.39 -1.91 16 18 C 0.02 0.22 5.88 -106.74 -0.63 -0.40 16 19 N -0.73 -16.04 4.44 -53.43 -0.24 -16.28 16 20 C -0.33 -8.21 7.57 -15.06 -0.11 -8.32 16 21 H 0.07 1.67 7.40 -52.48 -0.39 1.28 16 22 C -0.04 -1.07 5.50 -17.43 -0.10 -1.17 16 23 N -0.94 -27.30 13.70 55.49 0.76 -26.54 16 24 Si 1.07 24.60 29.92 -169.99 -5.09 19.52 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 26 H -0.30 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.66 6.55 -51.93 -0.34 0.32 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.09 1.86 6.01 -51.93 -0.31 1.55 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 1.07 6.71 -51.92 -0.35 0.72 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.41 6.63 6.18 -40.82 -0.25 6.38 16 38 H 0.17 2.36 6.37 -52.49 -0.33 2.02 16 39 H 0.17 1.39 8.06 -52.48 -0.42 0.96 16 40 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.17 2.27 6.28 -52.49 -0.33 1.94 16 42 H 0.37 8.64 6.63 -40.82 -0.27 8.36 16 43 H 0.26 7.34 6.77 -40.82 -0.28 7.07 16 LS Contribution 363.01 15.07 5.47 5.47 Total: -1.00 -29.93 363.01 -9.45 -39.39 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: -5.45 Total: 15.50 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -2.02 Total: -7.22 kcal Atomic # 7 Polarization: -61.39 SS G_CDS: 0.06 Total: -61.33 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.08 Total: -9.86 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.09 Total: 19.52 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.50 Total: -1.46 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.93 -9.45 -39.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568461009.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.320 kcal (2) G-P(sol) polarization free energy of solvation -29.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.64 seconds