Wall clock time and date at job start Tue Mar 31 2020 17:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46858 * 2 1 4 4 C 1.52995 * 109.46977 * 120.00143 * 2 1 3 5 5 H 1.09003 * 109.47022 * 300.00127 * 4 2 1 6 6 C 1.52998 * 109.47443 * 60.00215 * 4 2 1 7 7 N 1.46500 * 109.47304 * 174.99839 * 6 4 2 8 8 C 1.34776 * 119.99630 * 179.97438 * 7 6 4 9 9 O 1.21609 * 120.00569 * 0.02562 * 8 7 6 10 10 C 1.47368 * 119.99332 * 179.97438 * 8 7 6 11 11 C 1.38762 * 120.55890 * 0.02562 * 10 8 7 12 12 N 1.31899 * 121.12274 * 180.02562 * 11 10 8 13 13 C 1.31668 * 122.21937 * 359.97438 * 12 11 10 14 14 C 1.39288 * 121.14159 * 0.02562 * 13 12 11 15 15 S 1.75887 * 131.39886 * 179.97438 * 14 13 12 16 16 C 1.75555 * 91.52373 * 179.40705 * 15 14 13 17 17 C 1.32485 * 110.79518 * 0.47172 * 16 15 14 18 18 C 1.40013 * 115.77302 * 359.49434 * 17 16 15 19 19 N 1.46498 * 109.47120 * 180.02562 * 4 2 1 20 20 C 1.36935 * 120.00239 * 84.99640 * 19 4 2 21 21 H 1.08004 * 120.00069 * 0.02562 * 20 19 4 22 22 C 1.38811 * 120.00368 * 180.02562 * 20 19 4 23 23 N 1.31624 * 119.99540 * 359.72375 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47364 * 179.72253 * 24 22 20 26 26 H 1.48508 * 109.46883 * 299.72375 * 24 22 20 27 27 H 1.48497 * 109.46870 * 59.72186 * 24 22 20 28 28 H 1.09003 * 109.47348 * 299.99929 * 1 2 3 29 29 H 1.09004 * 109.47447 * 60.00101 * 1 2 3 30 30 H 1.08999 * 109.47360 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46986 * 240.00225 * 2 1 3 32 32 H 1.08994 * 109.47070 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47532 * 300.00174 * 3 2 1 34 34 H 1.09003 * 109.47082 * 59.99909 * 3 2 1 35 35 H 1.09008 * 109.46958 * 295.00113 * 6 4 2 36 36 H 1.08993 * 109.47007 * 54.99576 * 6 4 2 37 37 H 0.96999 * 119.99793 * 0.02562 * 7 6 4 38 38 H 1.08001 * 119.43471 * 359.97438 * 11 10 8 39 39 H 1.08005 * 119.42822 * 179.97438 * 13 12 11 40 40 H 1.07997 * 124.60737 * 179.97438 * 16 15 14 41 41 H 1.07994 * 122.11493 * 179.47238 * 17 16 15 42 42 H 0.97004 * 119.99747 * 265.00379 * 19 4 2 43 43 H 0.97000 * 120.00481 * 0.27542 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 1.5301 -2.1638 1.2492 7 7 2.1142 -2.8883 2.3806 8 6 1.8053 -4.1845 2.5825 9 8 1.0420 -4.7529 1.8254 10 6 2.3934 -4.9134 3.7203 11 6 3.2660 -4.2764 4.5911 12 7 3.7991 -4.9182 5.6127 13 6 3.5361 -6.1842 5.8610 14 6 2.6729 -6.9137 5.0469 15 16 2.1387 -8.5877 5.1234 16 6 1.1306 -8.3800 3.7012 17 6 1.2258 -7.1441 3.2336 18 6 2.0698 -6.2859 3.9488 19 7 3.5050 -0.7207 1.2495 20 6 4.1892 0.3542 1.7510 21 1 3.6488 1.2015 2.1466 22 6 5.5773 0.3549 1.7508 23 7 6.2358 -0.6800 1.2736 24 14 6.5107 1.8210 2.4355 25 1 7.9708 1.5730 2.3266 26 1 6.1563 3.0384 1.6624 27 1 6.1470 2.0171 3.8618 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 0.4437 -2.1651 1.3387 36 1 1.8184 -2.6510 0.3178 37 1 2.7227 -2.4348 2.9848 38 1 3.5134 -3.2377 4.4291 39 1 3.9983 -6.6655 6.7103 40 1 0.5222 -9.1567 3.2619 41 1 0.6867 -6.8192 2.3560 42 1 3.9903 -1.4819 0.8944 43 1 5.7512 -1.4415 0.9184 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568461009.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:28 Heat of formation + Delta-G solvation = 8.145629 kcal Electronic energy + Delta-G solvation = -26068.620349 eV Core-core repulsion = 22432.584185 eV Total energy + Delta-G solvation = -3636.036164 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.97200 -40.33873 -38.84080 -37.44942 -35.49449 -35.20010 -33.03363 -31.90399 -31.42871 -29.46777 -27.47574 -26.05357 -25.67658 -25.09037 -23.49739 -22.25993 -21.79701 -20.91348 -19.69403 -19.27037 -18.52848 -17.59102 -17.28491 -16.79347 -16.72328 -16.36303 -16.05059 -15.50127 -15.44004 -15.32097 -15.14513 -15.08046 -14.89095 -14.38190 -13.82680 -13.64235 -13.55480 -13.36312 -13.15091 -12.91217 -12.82982 -12.66864 -12.48673 -12.02911 -11.97257 -11.92195 -11.58698 -11.51011 -11.41443 -11.16180 -11.08189 -10.83140 -10.67665 -10.24439 -10.11962 -9.05455 -8.94173 -8.25470 -5.21464 -0.90975 -0.41360 0.32981 0.74704 1.20336 1.62486 1.64303 1.70275 1.85709 2.03795 2.62695 2.75652 3.15433 3.36596 3.48872 3.57598 3.63638 3.71131 3.79493 3.92341 4.10352 4.21755 4.22420 4.26537 4.35778 4.45457 4.56249 4.65052 4.76468 4.85580 4.89899 4.97536 5.01164 5.09233 5.14699 5.19222 5.24186 5.27322 5.40927 5.56441 5.70095 5.74403 6.36405 6.58947 6.63219 7.00413 7.15142 8.05222 8.17850 9.24584 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013055 B = 0.003329 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.195273 B = 8409.475175 C =10155.127671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 C -0.133 4.133 4 C 0.177 3.823 5 H 0.055 0.945 6 C 0.122 3.878 7 N -0.705 5.705 8 C 0.561 3.439 9 O -0.566 6.566 10 C -0.172 4.172 11 C 0.129 3.871 12 N -0.496 5.496 13 C 0.187 3.813 14 C -0.239 4.239 15 S 0.187 5.813 16 C -0.152 4.152 17 C -0.158 4.158 18 C 0.000 4.000 19 N -0.739 5.739 20 C -0.304 4.304 21 H 0.071 0.929 22 C -0.100 4.100 23 N -0.979 5.979 24 Si 1.116 2.884 25 H -0.302 1.302 26 H -0.282 1.282 27 H -0.278 1.278 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.087 0.913 36 H 0.053 0.947 37 H 0.408 0.592 38 H 0.163 0.837 39 H 0.202 0.798 40 H 0.209 0.791 41 H 0.150 0.850 42 H 0.358 0.642 43 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.692 -13.582 7.695 20.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.127 4.127 3 C -0.191 4.191 4 C 0.069 3.931 5 H 0.073 0.927 6 C -0.002 4.002 7 N -0.356 5.356 8 C 0.348 3.652 9 O -0.447 6.447 10 C -0.179 4.179 11 C -0.024 4.024 12 N -0.205 5.205 13 C 0.020 3.980 14 C -0.356 4.356 15 S 0.450 5.550 16 C -0.288 4.288 17 C -0.187 4.187 18 C -0.017 4.017 19 N -0.381 5.381 20 C -0.435 4.435 21 H 0.089 0.911 22 C -0.292 4.292 23 N -0.627 5.627 24 Si 0.943 3.057 25 H -0.229 1.229 26 H -0.209 1.209 27 H -0.205 1.205 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.245 0.755 38 H 0.180 0.820 39 H 0.219 0.781 40 H 0.226 0.774 41 H 0.168 0.832 42 H 0.190 0.810 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -11.016 -13.849 9.004 19.855 hybrid contribution -1.590 0.409 -2.101 2.666 sum -12.606 -13.440 6.903 19.677 Atomic orbital electron populations 1.21855 0.93754 1.01977 1.02262 1.21609 0.96061 0.96798 0.98205 1.21719 1.01620 0.95479 1.00268 1.20628 0.83476 0.92135 0.96904 0.92658 1.21712 0.98355 0.91984 0.88170 1.45928 1.48245 1.10604 1.30839 1.18059 0.80913 0.81830 0.84373 1.90666 1.37741 1.68167 1.48168 1.20760 1.03588 0.94461 0.99078 1.22849 0.90430 1.00211 0.88896 1.67806 1.23791 1.09916 1.18982 1.23047 0.90013 0.88452 0.96481 1.24171 1.07089 1.02156 1.02218 1.83897 1.41735 1.02074 1.27272 1.26070 1.02886 1.00388 0.99477 1.20196 1.01827 0.93416 1.03244 1.18504 0.95904 0.92917 0.94368 1.42593 1.01115 1.19917 1.74467 1.20191 0.91518 0.97450 1.34368 0.91088 1.26776 0.95024 1.05096 1.02310 1.71000 1.37611 1.07874 1.46254 0.82754 0.74481 0.72425 0.76069 1.22850 1.20874 1.20460 0.92232 0.91948 0.92185 0.93198 0.93339 0.92985 0.93533 0.89480 0.92841 0.75480 0.82035 0.78111 0.77390 0.83218 0.81027 0.94705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 8.84 71.98 0.64 -2.89 16 2 C -0.11 -3.42 2.69 -10.79 -0.03 -3.45 16 3 C -0.13 -4.63 8.26 71.98 0.59 -4.04 16 4 C 0.18 6.32 2.18 44.99 0.10 6.42 16 5 H 0.06 2.00 8.08 -2.39 -0.02 1.99 16 6 C 0.12 4.00 4.73 86.38 0.41 4.41 16 7 N -0.71 -23.65 5.34 -466.43 -2.49 -26.14 16 8 C 0.56 19.36 7.77 86.65 0.67 20.03 16 9 O -0.57 -21.41 14.47 -4.06 -0.06 -21.47 16 10 C -0.17 -5.41 5.94 -19.59 -0.12 -5.53 16 11 C 0.13 3.93 10.67 84.81 0.90 4.84 16 12 N -0.50 -14.14 10.32 -194.65 -2.01 -16.15 16 13 C 0.19 4.18 11.20 84.97 0.95 5.13 16 14 C -0.24 -5.43 6.52 22.98 0.15 -5.28 16 15 S 0.19 2.81 23.29 -56.49 -1.32 1.50 16 16 C -0.15 -2.52 11.10 66.69 0.74 -1.78 16 17 C -0.16 -3.90 9.43 21.57 0.20 -3.70 16 18 C 0.00 0.01 5.88 -21.23 -0.12 -0.12 16 19 N -0.74 -33.23 4.44 -322.95 -1.43 -34.67 16 20 C -0.30 -15.33 7.57 84.03 0.64 -14.69 16 21 H 0.07 3.50 7.40 -2.91 -0.02 3.48 16 22 C -0.10 -5.49 5.50 84.86 0.47 -5.02 16 23 N -0.98 -58.95 13.70 21.65 0.30 -58.66 16 24 Si 1.12 50.36 29.92 68.60 2.05 52.42 16 25 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 26 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 27 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 28 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.06 1.41 6.55 -2.39 -0.02 1.39 16 31 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.05 2.06 6.01 -2.39 -0.01 2.05 16 33 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.09 2.59 6.71 -2.38 -0.02 2.57 16 36 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.41 13.92 6.18 -92.71 -0.57 13.35 16 38 H 0.16 4.90 6.37 -2.91 -0.02 4.88 16 39 H 0.20 2.78 8.06 -2.91 -0.02 2.75 16 40 H 0.21 1.86 8.06 -2.91 -0.02 1.84 16 41 H 0.15 4.20 6.28 -2.91 -0.02 4.18 16 42 H 0.36 17.59 6.63 -92.71 -0.61 16.98 16 43 H 0.24 14.65 6.77 -92.71 -0.63 14.02 16 Total: -1.00 -67.05 363.01 1.25 -65.79 By element: Atomic # 1 Polarization: 43.03 SS G_CDS: 0.02 Total: 43.05 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 6.19 Total: -5.66 kcal Atomic # 7 Polarization: -129.98 SS G_CDS: -5.64 Total: -135.62 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.06 Total: -21.47 kcal Atomic # 14 Polarization: 50.36 SS G_CDS: 2.05 Total: 52.42 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -1.32 Total: 1.50 kcal Total: -67.05 1.25 -65.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568461009.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.940 kcal (2) G-P(sol) polarization free energy of solvation -67.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds