Wall clock time and date at job start Tue Mar 31 2020 17:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47219 * 2 1 4 4 C 1.52999 * 109.47148 * 119.99675 * 2 1 3 5 5 H 1.09004 * 109.47644 * 184.99972 * 4 2 1 6 6 C 1.53006 * 109.47054 * 65.00358 * 4 2 1 7 7 N 1.46504 * 109.46883 * 185.00191 * 6 4 2 8 8 C 1.34775 * 119.99531 * 179.97438 * 7 6 4 9 9 O 1.21612 * 120.00327 * 0.02562 * 8 7 6 10 10 C 1.47365 * 120.00038 * 179.97438 * 8 7 6 11 11 C 1.38764 * 120.55059 * 0.02562 * 10 8 7 12 12 N 1.31906 * 121.12480 * 180.02562 * 11 10 8 13 13 C 1.31669 * 122.21178 * 359.97438 * 12 11 10 14 14 C 1.39288 * 121.14276 * 0.02562 * 13 12 11 15 15 S 1.75888 * 131.39250 * 179.97438 * 14 13 12 16 16 C 1.75545 * 91.52329 * 180.02562 * 15 14 13 17 17 C 1.32480 * 110.79397 * 359.97438 * 16 15 14 18 18 C 1.40013 * 115.78270 * 359.75487 * 17 16 15 19 19 N 1.46496 * 109.47330 * 305.00337 * 4 2 1 20 20 C 1.36939 * 120.00091 * 274.99945 * 19 4 2 21 21 H 1.08003 * 119.99579 * 359.97438 * 20 19 4 22 22 C 1.38806 * 120.00305 * 179.97438 * 20 19 4 23 23 N 1.31621 * 120.00183 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00120 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47025 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46829 * 120.00168 * 24 22 20 27 27 H 1.48499 * 109.47391 * 240.00032 * 24 22 20 28 28 H 1.08992 * 109.47115 * 299.99898 * 1 2 3 29 29 H 1.08992 * 109.47081 * 60.00367 * 1 2 3 30 30 H 1.08999 * 109.46610 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47351 * 239.99486 * 2 1 3 32 32 H 1.08995 * 109.46897 * 59.99518 * 3 2 1 33 33 H 1.09001 * 109.47320 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.46664 * 300.00258 * 3 2 1 35 35 H 1.09001 * 109.47002 * 304.99688 * 6 4 2 36 36 H 1.08993 * 109.46955 * 65.00125 * 6 4 2 37 37 H 0.96992 * 119.99966 * 359.97438 * 7 6 4 38 38 H 1.07999 * 119.43911 * 359.97438 * 11 10 8 39 39 H 1.08001 * 119.42487 * 179.97438 * 13 12 11 40 40 H 1.07996 * 124.60356 * 179.97438 * 16 15 14 41 41 H 1.08007 * 122.10663 * 180.02562 * 17 16 15 42 42 H 0.97002 * 120.00388 * 95.00342 * 19 4 2 43 43 H 0.96994 * 120.00045 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1264 -0.6443 1.2953 6 6 1.6353 -2.1955 1.1880 7 7 2.0184 -2.8593 2.4366 8 6 1.7588 -4.1704 2.6098 9 8 1.2069 -4.8025 1.7295 10 6 2.1446 -4.8383 3.8654 11 6 2.7753 -4.1283 4.8772 12 7 3.1260 -4.7148 6.0054 13 6 2.8995 -5.9919 6.2324 14 6 2.2724 -6.7926 5.2808 15 16 1.8431 -8.4982 5.2965 16 6 1.1566 -8.3884 3.6846 17 6 1.2617 -7.1554 3.2116 18 6 1.8705 -6.2261 4.0637 19 7 1.4559 -0.1036 2.4424 20 6 2.0441 1.0003 2.9997 21 1 2.9389 1.4153 2.5599 22 6 1.4903 1.5858 4.1299 23 7 0.4001 1.0797 4.6662 24 14 2.2932 3.0912 4.8905 25 1 3.4979 3.4600 4.1046 26 1 1.3314 4.2227 4.8817 27 1 2.6879 2.7881 6.2896 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.6767 1.9563 0.8899 33 1 3.1301 1.4426 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 0.5563 -2.2707 1.0528 36 1 2.1409 -2.6765 0.3508 37 1 2.4589 -2.3552 3.1385 38 1 2.9832 -3.0776 4.7382 39 1 3.2062 -6.4262 7.1725 40 1 0.7093 -9.2140 3.1509 41 1 0.8966 -6.8832 2.2323 42 1 0.6524 -0.4766 2.8377 43 1 0.0133 1.4886 5.4561 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568461010.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:45 Heat of formation + Delta-G solvation = 27.656949 kcal Electronic energy + Delta-G solvation = -26117.773297 eV Core-core repulsion = 22482.583207 eV Total energy + Delta-G solvation = -3635.190089 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -40.85699 -39.00637 -37.30515 -36.44720 -33.99802 -32.93803 -31.84852 -30.45838 -30.14917 -27.97719 -26.39546 -24.81266 -24.60653 -23.54018 -22.13092 -21.17134 -20.54529 -19.06850 -18.30656 -17.46069 -17.19772 -16.46171 -16.09601 -15.48466 -15.35255 -14.84269 -14.50475 -14.30938 -14.19738 -14.14280 -13.82489 -13.42124 -13.11179 -13.02969 -12.80602 -12.36947 -12.25880 -12.15012 -11.96062 -11.33428 -11.14786 -11.03664 -10.97857 -10.82706 -10.60742 -10.30919 -10.21182 -10.12966 -10.01915 -9.91840 -9.52235 -9.45814 -9.23994 -8.96475 -8.73935 -8.04848 -7.05797 -5.84292 -3.13624 0.12120 0.63233 1.20313 1.63647 2.18412 2.90075 3.36291 3.39324 3.45191 3.47336 3.77485 4.19236 4.37048 4.52224 4.56444 4.70268 4.95441 5.12666 5.19734 5.35853 5.40282 5.45712 5.50041 5.70551 5.72951 5.80904 5.85011 5.95157 6.05184 6.15919 6.19941 6.28810 6.31858 6.39050 6.51147 6.60917 6.65849 6.79211 6.86087 7.05207 7.27693 7.65247 7.67556 7.78416 8.32571 8.39136 9.45272 9.99068 10.35151 11.37278 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013888 B = 0.003291 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.599500 B = 8505.893427 C =10068.207204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 C -0.142 4.142 4 C 0.167 3.833 5 H 0.054 0.946 6 C 0.112 3.888 7 N -0.702 5.702 8 C 0.560 3.440 9 O -0.546 6.546 10 C -0.145 4.145 11 C 0.133 3.867 12 N -0.471 5.471 13 C 0.176 3.824 14 C -0.217 4.217 15 S 0.109 5.891 16 C -0.176 4.176 17 C -0.119 4.119 18 C 0.016 3.984 19 N -0.718 5.718 20 C -0.238 4.238 21 H 0.074 0.926 22 C -0.008 4.008 23 N -0.927 5.927 24 Si 0.901 3.099 25 H -0.280 1.280 26 H -0.293 1.293 27 H -0.292 1.292 28 H 0.072 0.928 29 H 0.037 0.963 30 H 0.043 0.957 31 H 0.049 0.951 32 H 0.086 0.914 33 H 0.039 0.961 34 H 0.032 0.968 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.410 0.590 38 H 0.171 0.829 39 H 0.165 0.835 40 H 0.174 0.826 41 H 0.168 0.832 42 H 0.385 0.615 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.596 -16.769 -2.075 17.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.128 4.128 3 C -0.199 4.199 4 C 0.056 3.944 5 H 0.072 0.928 6 C -0.012 4.012 7 N -0.353 5.353 8 C 0.346 3.654 9 O -0.426 6.426 10 C -0.152 4.152 11 C -0.020 4.020 12 N -0.179 5.179 13 C 0.009 3.991 14 C -0.335 4.335 15 S 0.371 5.629 16 C -0.311 4.311 17 C -0.149 4.149 18 C -0.001 4.001 19 N -0.360 5.360 20 C -0.369 4.369 21 H 0.092 0.908 22 C -0.205 4.205 23 N -0.575 5.575 24 Si 0.732 3.268 25 H -0.206 1.206 26 H -0.220 1.220 27 H -0.219 1.219 28 H 0.091 0.909 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.105 0.895 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.248 0.752 38 H 0.187 0.813 39 H 0.182 0.818 40 H 0.191 0.809 41 H 0.185 0.815 42 H 0.220 0.780 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.870 -17.679 -1.038 18.128 hybrid contribution -0.354 1.707 -0.741 1.895 sum 3.516 -15.972 -1.780 16.451 Atomic orbital electron populations 1.21773 0.95678 1.00616 1.01748 1.21607 0.96183 0.97184 0.97862 1.21841 0.99562 0.96357 1.02159 1.20564 0.96959 0.88263 0.88586 0.92772 1.21806 1.00801 0.93547 0.85027 1.45918 1.60224 1.08834 1.20367 1.17785 0.79285 0.82282 0.86028 1.90689 1.43307 1.64955 1.43610 1.20894 1.04095 0.93083 0.97145 1.22953 0.91429 1.00300 0.87333 1.67789 1.18489 1.10147 1.21485 1.22414 0.91258 0.88496 0.96969 1.23842 1.09507 0.99817 1.00317 1.84092 1.60416 1.03193 1.15187 1.25554 1.05635 1.01347 0.98574 1.20305 1.00702 0.91246 1.02617 1.18257 0.96118 0.93177 0.92549 1.42445 1.31932 1.33242 1.28423 1.19231 1.07109 1.03896 1.06695 0.90844 1.24709 0.97741 0.99440 0.98606 1.69661 1.21891 1.42170 1.23795 0.86223 0.78432 0.83017 0.79132 1.20568 1.22002 1.21898 0.90949 0.94401 0.93815 0.93251 0.89547 0.94137 0.94843 0.91127 0.91665 0.75244 0.81254 0.81833 0.80888 0.81480 0.78028 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 8.74 37.16 0.32 -2.03 16 2 C -0.11 -1.75 2.74 -90.62 -0.25 -2.00 16 3 C -0.14 -2.44 8.46 37.16 0.31 -2.12 16 4 C 0.17 2.91 2.28 -67.93 -0.16 2.76 16 5 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 6 C 0.11 1.81 5.10 -4.04 -0.02 1.79 16 7 N -0.70 -11.28 5.34 -61.40 -0.33 -11.61 16 8 C 0.56 9.28 7.77 -12.55 -0.10 9.18 16 9 O -0.55 -10.00 14.47 5.27 0.08 -9.93 16 10 C -0.14 -2.20 5.94 -104.21 -0.62 -2.82 16 11 C 0.13 1.94 10.67 -17.33 -0.18 1.76 16 12 N -0.47 -6.70 10.32 -12.87 -0.13 -6.84 16 13 C 0.18 2.11 11.20 -17.23 -0.19 1.92 16 14 C -0.22 -2.66 6.52 -38.48 -0.25 -2.91 16 15 S 0.11 1.03 23.29 -107.50 -2.50 -1.48 16 16 C -0.18 -1.72 11.10 28.82 0.32 -1.40 16 17 C -0.12 -1.52 9.43 -40.83 -0.39 -1.91 16 18 C 0.02 0.22 5.88 -106.74 -0.63 -0.41 16 19 N -0.72 -15.39 3.53 -53.42 -0.19 -15.58 16 20 C -0.24 -5.78 7.75 -15.06 -0.12 -5.90 16 21 H 0.07 1.76 7.32 -52.48 -0.38 1.38 16 22 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 23 N -0.93 -25.96 13.06 55.49 0.72 -25.23 16 24 Si 0.90 21.11 29.55 -169.99 -5.02 16.09 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H 0.07 1.43 7.47 -51.93 -0.39 1.04 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.04 0.69 6.46 -51.93 -0.34 0.35 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.09 1.75 5.99 -51.93 -0.31 1.44 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 1.21 6.34 -51.93 -0.33 0.89 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.41 6.57 6.18 -40.82 -0.25 6.32 16 38 H 0.17 2.36 6.37 -52.49 -0.33 2.02 16 39 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.17 2.29 6.28 -52.48 -0.33 1.96 16 42 H 0.39 9.14 7.80 -40.82 -0.32 8.82 16 43 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 363.40 15.07 5.48 5.48 Total: -1.00 -28.75 363.40 -9.43 -38.18 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -5.50 Total: 15.31 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -2.04 Total: -4.40 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: 0.08 Total: -59.26 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.08 Total: -9.93 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.50 Total: -1.48 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.75 -9.43 -38.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568461010.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.837 kcal (2) G-P(sol) polarization free energy of solvation -28.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds