Wall clock time and date at job start Tue Mar 31 2020 17:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47219 * 2 1 4 4 C 1.52999 * 109.47148 * 119.99675 * 2 1 3 5 5 H 1.09004 * 109.47644 * 184.99972 * 4 2 1 6 6 C 1.53006 * 109.47054 * 65.00358 * 4 2 1 7 7 N 1.46504 * 109.46883 * 185.00191 * 6 4 2 8 8 C 1.34775 * 119.99531 * 179.97438 * 7 6 4 9 9 O 1.21612 * 120.00327 * 0.02562 * 8 7 6 10 10 C 1.47365 * 120.00038 * 179.97438 * 8 7 6 11 11 C 1.38764 * 120.55059 * 0.02562 * 10 8 7 12 12 N 1.31906 * 121.12480 * 180.02562 * 11 10 8 13 13 C 1.31669 * 122.21178 * 359.97438 * 12 11 10 14 14 C 1.39288 * 121.14276 * 0.02562 * 13 12 11 15 15 S 1.75888 * 131.39250 * 179.97438 * 14 13 12 16 16 C 1.75545 * 91.52329 * 180.02562 * 15 14 13 17 17 C 1.32480 * 110.79397 * 359.97438 * 16 15 14 18 18 C 1.40013 * 115.78270 * 359.75487 * 17 16 15 19 19 N 1.46496 * 109.47330 * 305.00337 * 4 2 1 20 20 C 1.36939 * 120.00091 * 274.99945 * 19 4 2 21 21 H 1.08003 * 119.99579 * 359.97438 * 20 19 4 22 22 C 1.38806 * 120.00305 * 179.97438 * 20 19 4 23 23 N 1.31621 * 120.00183 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00120 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47025 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46829 * 120.00168 * 24 22 20 27 27 H 1.48499 * 109.47391 * 240.00032 * 24 22 20 28 28 H 1.08992 * 109.47115 * 299.99898 * 1 2 3 29 29 H 1.08992 * 109.47081 * 60.00367 * 1 2 3 30 30 H 1.08999 * 109.46610 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47351 * 239.99486 * 2 1 3 32 32 H 1.08995 * 109.46897 * 59.99518 * 3 2 1 33 33 H 1.09001 * 109.47320 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.46664 * 300.00258 * 3 2 1 35 35 H 1.09001 * 109.47002 * 304.99688 * 6 4 2 36 36 H 1.08993 * 109.46955 * 65.00125 * 6 4 2 37 37 H 0.96992 * 119.99966 * 359.97438 * 7 6 4 38 38 H 1.07999 * 119.43911 * 359.97438 * 11 10 8 39 39 H 1.08001 * 119.42487 * 179.97438 * 13 12 11 40 40 H 1.07996 * 124.60356 * 179.97438 * 16 15 14 41 41 H 1.08007 * 122.10663 * 180.02562 * 17 16 15 42 42 H 0.97002 * 120.00388 * 95.00342 * 19 4 2 43 43 H 0.96994 * 120.00045 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1264 -0.6443 1.2953 6 6 1.6353 -2.1955 1.1880 7 7 2.0184 -2.8593 2.4366 8 6 1.7588 -4.1704 2.6098 9 8 1.2069 -4.8025 1.7295 10 6 2.1446 -4.8383 3.8654 11 6 2.7753 -4.1283 4.8772 12 7 3.1260 -4.7148 6.0054 13 6 2.8995 -5.9919 6.2324 14 6 2.2724 -6.7926 5.2808 15 16 1.8431 -8.4982 5.2965 16 6 1.1566 -8.3884 3.6846 17 6 1.2617 -7.1554 3.2116 18 6 1.8705 -6.2261 4.0637 19 7 1.4559 -0.1036 2.4424 20 6 2.0441 1.0003 2.9997 21 1 2.9389 1.4153 2.5599 22 6 1.4903 1.5858 4.1299 23 7 0.4001 1.0797 4.6662 24 14 2.2932 3.0912 4.8905 25 1 3.4979 3.4600 4.1046 26 1 1.3314 4.2227 4.8817 27 1 2.6879 2.7881 6.2896 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.6767 1.9563 0.8899 33 1 3.1301 1.4426 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 0.5563 -2.2707 1.0528 36 1 2.1409 -2.6765 0.3508 37 1 2.4589 -2.3552 3.1385 38 1 2.9832 -3.0776 4.7382 39 1 3.2062 -6.4262 7.1725 40 1 0.7093 -9.2140 3.1509 41 1 0.8966 -6.8832 2.2323 42 1 0.6524 -0.4766 2.8377 43 1 0.0133 1.4886 5.4561 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568461010.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:43 Heat of formation + Delta-G solvation = 10.141892 kcal Electronic energy + Delta-G solvation = -26118.532807 eV Core-core repulsion = 22482.583207 eV Total energy + Delta-G solvation = -3635.949599 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 3.40 seconds Orbital eigenvalues (eV) -41.91290 -40.25742 -38.75944 -37.40693 -35.35160 -34.72746 -32.95854 -31.85407 -31.38902 -29.44820 -27.79077 -26.08187 -25.64416 -25.12978 -23.50251 -22.18805 -21.71475 -20.40907 -19.55239 -19.04198 -18.46308 -17.49146 -17.17337 -16.82607 -16.67180 -16.28435 -15.89216 -15.53198 -15.31398 -15.17390 -15.09977 -15.02182 -14.61317 -14.42767 -13.86591 -13.68870 -13.40421 -13.32184 -13.10662 -12.89961 -12.80658 -12.68971 -12.39312 -12.14263 -11.98856 -11.92575 -11.87513 -11.45203 -11.29476 -11.16189 -11.03298 -10.85082 -10.62203 -10.18099 -10.03006 -8.92050 -8.90424 -7.84558 -5.10428 -0.86222 -0.36693 0.36377 0.78041 1.24259 1.49994 1.53106 1.59822 1.71503 2.13539 2.61983 2.68316 3.21130 3.41849 3.49817 3.63451 3.68204 3.89789 3.94599 3.97866 4.17508 4.28851 4.30264 4.36729 4.45825 4.50440 4.69654 4.75891 4.80922 4.96854 4.99599 5.04474 5.12412 5.19385 5.24202 5.30704 5.31606 5.34930 5.51021 5.61647 5.66202 5.83241 6.35604 6.46817 6.67819 7.10033 7.44425 8.16036 8.40926 9.38264 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013888 B = 0.003291 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.599500 B = 8505.893427 C =10068.207204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.104 4.104 3 C -0.138 4.138 4 C 0.168 3.832 5 H 0.058 0.942 6 C 0.120 3.880 7 N -0.703 5.703 8 C 0.560 3.440 9 O -0.568 6.568 10 C -0.170 4.170 11 C 0.129 3.871 12 N -0.496 5.496 13 C 0.186 3.814 14 C -0.239 4.239 15 S 0.183 5.817 16 C -0.153 4.153 17 C -0.156 4.156 18 C 0.000 4.000 19 N -0.721 5.721 20 C -0.210 4.210 21 H 0.080 0.920 22 C -0.069 4.069 23 N -0.965 5.965 24 Si 0.953 3.047 25 H -0.266 1.266 26 H -0.304 1.304 27 H -0.301 1.301 28 H 0.035 0.965 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.409 0.591 38 H 0.165 0.835 39 H 0.201 0.799 40 H 0.209 0.791 41 H 0.151 0.849 42 H 0.373 0.627 43 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.642 -19.047 -2.596 19.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.125 4.125 3 C -0.196 4.196 4 C 0.059 3.941 5 H 0.076 0.924 6 C -0.004 4.004 7 N -0.353 5.353 8 C 0.348 3.652 9 O -0.450 6.450 10 C -0.177 4.177 11 C -0.023 4.023 12 N -0.205 5.205 13 C 0.018 3.982 14 C -0.356 4.356 15 S 0.446 5.554 16 C -0.289 4.289 17 C -0.186 4.186 18 C -0.017 4.017 19 N -0.362 5.362 20 C -0.342 4.342 21 H 0.098 0.902 22 C -0.261 4.261 23 N -0.617 5.617 24 Si 0.785 3.215 25 H -0.191 1.191 26 H -0.232 1.232 27 H -0.229 1.229 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.247 0.753 38 H 0.182 0.818 39 H 0.217 0.783 40 H 0.225 0.775 41 H 0.168 0.832 42 H 0.205 0.795 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 4.962 -19.957 -1.600 20.627 hybrid contribution -0.665 2.194 -0.626 2.376 sum 4.297 -17.764 -2.225 18.411 Atomic orbital electron populations 1.21689 0.95936 1.00760 1.00777 1.21573 0.95874 0.96924 0.98125 1.21768 1.00034 0.96454 1.01297 1.20712 0.96841 0.88886 0.87616 0.92361 1.21713 1.00271 0.92684 0.85706 1.45907 1.60205 1.08880 1.20325 1.18032 0.78683 0.82139 0.86384 1.90664 1.44434 1.65378 1.44507 1.20781 1.06120 0.94054 0.96766 1.22889 0.91564 1.00223 0.87668 1.67811 1.19780 1.11580 1.21340 1.23022 0.89497 0.87718 0.97935 1.24157 1.09678 1.02072 0.99696 1.83885 1.58239 0.99717 1.13569 1.26052 1.02906 1.01033 0.98939 1.20204 1.03368 0.92439 1.02550 1.18508 0.96456 0.93012 0.93767 1.42515 1.31384 1.32675 1.29579 1.19500 1.06117 1.03317 1.05295 0.90224 1.25272 0.98752 1.02075 1.00019 1.69800 1.23782 1.43723 1.24403 0.85365 0.77812 0.80333 0.78039 1.19071 1.23249 1.22888 0.94561 0.92627 0.93172 0.90194 0.93120 0.93309 0.92968 0.92242 0.89994 0.75346 0.81763 0.78251 0.77456 0.83179 0.79481 0.94615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.38 8.74 71.98 0.63 -3.75 16 2 C -0.10 -3.22 2.74 -10.79 -0.03 -3.25 16 3 C -0.14 -4.52 8.46 71.98 0.61 -3.91 16 4 C 0.17 5.77 2.28 44.99 0.10 5.88 16 5 H 0.06 1.99 8.08 -2.39 -0.02 1.97 16 6 C 0.12 3.86 5.10 86.38 0.44 4.30 16 7 N -0.70 -23.19 5.34 -466.42 -2.49 -25.69 16 8 C 0.56 19.23 7.77 86.65 0.67 19.91 16 9 O -0.57 -21.46 14.47 -4.07 -0.06 -21.51 16 10 C -0.17 -5.35 5.94 -19.60 -0.12 -5.46 16 11 C 0.13 3.92 10.67 84.81 0.90 4.82 16 12 N -0.50 -14.11 10.32 -194.65 -2.01 -16.12 16 13 C 0.19 4.16 11.20 84.97 0.95 5.11 16 14 C -0.24 -5.46 6.52 22.98 0.15 -5.31 16 15 S 0.18 2.80 23.29 -56.49 -1.32 1.48 16 16 C -0.15 -2.57 11.10 66.69 0.74 -1.83 16 17 C -0.16 -3.89 9.43 21.57 0.20 -3.69 16 18 C 0.00 -0.01 5.88 -21.24 -0.12 -0.13 16 19 N -0.72 -31.42 3.53 -322.94 -1.14 -32.56 16 20 C -0.21 -10.29 7.75 84.03 0.65 -9.63 16 21 H 0.08 3.77 7.32 -2.91 -0.02 3.75 16 22 C -0.07 -3.67 5.50 84.86 0.47 -3.21 16 23 N -0.97 -56.05 13.06 21.65 0.28 -55.77 16 24 Si 0.95 44.34 29.55 68.60 2.03 46.37 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 26 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 27 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 28 H 0.04 1.44 7.47 -2.39 -0.02 1.42 16 29 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.05 1.55 6.46 -2.39 -0.02 1.53 16 31 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.05 2.02 5.99 -2.39 -0.01 2.01 16 33 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.06 2.06 6.34 -2.39 -0.02 2.04 16 36 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.41 13.65 6.18 -92.71 -0.57 13.08 16 38 H 0.17 4.90 6.37 -2.91 -0.02 4.88 16 39 H 0.20 2.79 8.06 -2.91 -0.02 2.77 16 40 H 0.21 1.91 8.06 -2.91 -0.02 1.89 16 41 H 0.15 4.22 6.28 -2.91 -0.02 4.20 16 42 H 0.37 18.32 7.80 -92.71 -0.72 17.59 16 43 H 0.24 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -64.19 363.40 1.32 -62.87 By element: Atomic # 1 Polarization: 41.31 SS G_CDS: -0.23 Total: 41.08 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 6.25 Total: -0.17 kcal Atomic # 7 Polarization: -124.77 SS G_CDS: -5.36 Total: -130.12 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.06 Total: -21.51 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -1.32 Total: 1.48 kcal Total: -64.19 1.32 -62.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568461010.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.016 kcal (2) G-P(sol) polarization free energy of solvation -64.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.40 seconds