Wall clock time and date at job start Tue Mar 31 2020 18:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46507 * 109.47103 * 2 1 4 4 C 1.46500 * 119.99591 * 262.39296 * 3 2 1 5 5 C 1.53002 * 109.46997 * 269.99990 * 4 3 2 6 6 N 1.46504 * 109.47014 * 180.02562 * 5 4 3 7 7 C 1.36940 * 119.99924 * 180.02562 * 6 5 4 8 8 H 1.08006 * 119.99592 * 359.97438 * 7 6 5 9 9 C 1.38811 * 120.00017 * 180.02562 * 7 6 5 10 10 N 1.31617 * 120.00001 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00050 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47324 * 59.99562 * 11 9 7 13 13 H 1.48501 * 109.47132 * 179.97438 * 11 9 7 14 14 H 1.48507 * 109.47166 * 299.99904 * 11 9 7 15 15 C 1.34769 * 120.00053 * 82.39152 * 3 2 1 16 16 O 1.21766 * 119.99836 * 182.89314 * 15 3 2 17 17 C 1.46114 * 120.00179 * 2.89740 * 15 3 2 18 18 S 1.75811 * 125.47548 * 350.94795 * 17 15 3 19 19 C 1.70570 * 91.67150 * 180.02562 * 18 17 15 20 20 C 1.33575 * 111.17728 * 359.75187 * 19 18 17 21 21 C 1.37351 * 125.47492 * 170.97652 * 17 15 3 22 22 N 1.39877 * 123.49252 * 359.95327 * 21 17 15 23 23 C 1.36602 * 125.67176 * 309.69677 * 22 21 17 24 24 C 1.34838 * 108.20016 * 179.82714 * 23 22 21 25 25 C 1.40966 * 107.47101 * 0.42691 * 24 23 22 26 26 C 1.34839 * 107.47380 * 359.73348 * 25 24 23 27 27 H 1.09007 * 109.47357 * 300.00486 * 1 2 3 28 28 H 1.08998 * 109.47458 * 60.00083 * 1 2 3 29 29 H 1.09001 * 109.47186 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47636 * 239.99913 * 2 1 3 31 31 H 1.09002 * 109.47031 * 119.99653 * 2 1 3 32 32 H 1.09003 * 109.47661 * 29.99838 * 4 3 2 33 33 H 1.08994 * 109.47073 * 150.00165 * 4 3 2 34 34 H 1.09007 * 109.47237 * 299.99791 * 5 4 3 35 35 H 1.08997 * 109.47449 * 60.00524 * 5 4 3 36 36 H 0.96998 * 120.00221 * 359.97438 * 6 5 4 37 37 H 0.96997 * 120.00510 * 180.02562 * 10 9 7 38 38 H 1.08007 * 124.41063 * 179.97438 * 19 18 17 39 39 H 1.07995 * 122.46091 * 180.23855 * 20 19 18 40 40 H 1.08000 * 125.90105 * 359.95456 * 23 22 21 41 41 H 1.08003 * 126.26547 * 180.18863 * 24 23 22 42 42 H 1.08007 * 126.26436 * 179.69450 * 25 24 23 43 43 H 1.08003 * 125.89723 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4208 2.0158 -1.2576 5 6 3.9089 1.7601 -1.5044 6 7 4.3116 2.3952 -2.7618 7 6 5.6079 2.2995 -3.1927 8 1 6.3335 1.7563 -2.6055 9 6 5.9895 2.9017 -4.3838 10 7 5.1054 3.5642 -5.0992 11 14 7.7579 2.7719 -4.9713 12 1 8.1125 1.3425 -5.1622 13 1 7.9056 3.4945 -6.2602 14 1 8.6615 3.3750 -3.9588 15 6 2.0972 2.0681 1.1568 16 8 2.4529 3.2326 1.1504 17 6 1.7561 1.4154 2.4188 18 16 1.0174 -0.1719 2.5795 19 6 1.0175 -0.0548 4.2811 20 6 1.5460 1.1035 4.6851 21 6 1.9604 1.9435 3.6701 22 7 2.5343 3.1994 3.8936 23 6 3.7016 3.6506 3.3462 24 6 3.9207 4.9032 3.7948 25 6 2.8567 5.2358 4.6577 26 6 2.0235 4.1765 4.7001 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 1.8391 1.5967 -2.0786 33 1 2.2418 3.0892 -1.1965 34 1 4.4907 2.1793 -0.6835 35 1 4.0879 0.6867 -1.5656 36 1 3.6598 2.8827 -3.2894 37 1 5.3719 3.9846 -5.9316 38 1 0.6427 -0.8194 4.9456 39 1 1.6391 1.3655 5.7286 40 1 4.3381 3.1001 2.6692 41 1 4.7598 5.5345 3.5425 42 1 2.7321 6.1682 5.1883 43 1 1.1103 4.1116 5.2731 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568763759.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:25 Heat of formation + Delta-G solvation = 88.325491 kcal Electronic energy + Delta-G solvation = -26295.404269 eV Core-core repulsion = 22662.844965 eV Total energy + Delta-G solvation = -3632.559304 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.48167 -39.85126 -37.84227 -36.22114 -34.71154 -32.22287 -31.74848 -30.47413 -29.73897 -28.62405 -27.41709 -25.00951 -23.85489 -23.57976 -21.92001 -21.30325 -20.29600 -20.20671 -19.06754 -18.17162 -17.48277 -17.06998 -16.25445 -15.81917 -15.25467 -14.94293 -14.66939 -14.46903 -14.32674 -13.89699 -13.73395 -13.63803 -13.41042 -13.26009 -13.02313 -12.93802 -12.74628 -12.49119 -12.18538 -12.07115 -11.90446 -11.63497 -11.35347 -11.05828 -10.95337 -10.82814 -10.66656 -10.14306 -9.95125 -9.72344 -9.46931 -8.96288 -8.86786 -8.67905 -8.14598 -7.95093 -6.93664 -5.75505 -3.05114 0.08445 1.04447 1.52356 1.79904 2.59204 2.85900 3.03350 3.10156 3.25513 3.45721 3.50015 3.51309 4.26951 4.54215 4.62072 4.66523 4.78568 4.83475 5.07985 5.09867 5.28666 5.39733 5.44476 5.46497 5.48891 5.56205 5.62977 5.68092 5.74765 5.78950 5.86226 5.91718 5.99921 6.08311 6.42488 6.43023 6.48401 6.69752 6.85231 7.10876 7.29879 7.36130 7.55022 7.70145 8.13564 8.42711 9.53726 10.09102 10.44253 11.47274 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012565 B = 0.003415 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.811050 B = 8196.745864 C = 9773.106902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.090 3.910 3 N -0.601 5.601 4 C 0.110 3.890 5 C 0.144 3.856 6 N -0.729 5.729 7 C -0.240 4.240 8 H 0.069 0.931 9 C -0.012 4.012 10 N -0.933 5.933 11 Si 0.909 3.091 12 H -0.286 1.286 13 H -0.290 1.290 14 H -0.285 1.285 15 C 0.579 3.421 16 O -0.502 6.502 17 C -0.282 4.282 18 S 0.284 5.716 19 C -0.261 4.261 20 C -0.151 4.151 21 C 0.185 3.815 22 N -0.389 5.389 23 C 0.045 3.955 24 C -0.204 4.204 25 C -0.187 4.187 26 C -0.022 4.022 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.022 0.978 35 H 0.018 0.982 36 H 0.384 0.616 37 H 0.256 0.744 38 H 0.171 0.829 39 H 0.145 0.855 40 H 0.157 0.843 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.525 -10.219 20.826 26.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.035 4.035 3 N -0.334 5.334 4 C -0.012 4.012 5 C 0.015 3.985 6 N -0.374 5.374 7 C -0.371 4.371 8 H 0.087 0.913 9 C -0.208 4.208 10 N -0.582 5.582 11 Si 0.739 3.261 12 H -0.213 1.213 13 H -0.216 1.216 14 H -0.212 1.212 15 C 0.366 3.634 16 O -0.377 6.377 17 C -0.405 4.405 18 S 0.553 5.447 19 C -0.398 4.398 20 C -0.183 4.183 21 C 0.077 3.923 22 N -0.064 5.064 23 C -0.082 4.082 24 C -0.228 4.228 25 C -0.212 4.212 26 C -0.148 4.148 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.121 0.879 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.040 0.960 35 H 0.036 0.964 36 H 0.218 0.782 37 H 0.066 0.934 38 H 0.188 0.812 39 H 0.163 0.837 40 H 0.174 0.826 41 H 0.155 0.845 42 H 0.154 0.846 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -13.781 -11.027 19.767 26.500 hybrid contribution 1.182 1.047 0.617 1.695 sum -12.599 -9.979 20.384 25.958 Atomic orbital electron populations 1.22472 0.95168 1.03247 1.03249 1.21905 0.95036 0.83265 1.03289 1.47776 1.64607 1.13512 1.07539 1.21765 0.96984 0.99492 0.82913 1.20902 0.91427 0.95868 0.90303 1.42185 1.09637 1.64030 1.21568 1.19149 0.86590 1.28104 1.03272 0.91271 1.24739 0.97888 1.00493 0.97688 1.69646 1.33132 1.39505 1.15866 0.86246 0.84524 0.77426 0.77860 1.21265 1.21618 1.21181 1.16786 0.78526 0.86101 0.81955 1.90967 1.46049 1.15050 1.85682 1.24672 1.15975 1.02744 0.97078 1.83900 1.53656 1.11273 0.95836 1.25822 1.06107 1.02188 1.05671 1.19697 1.04411 0.93857 1.00287 1.16946 0.97720 0.86395 0.91204 1.40893 1.18757 1.09477 1.37258 1.21769 0.88662 0.96780 1.00982 1.20873 1.01988 0.95932 1.04016 1.20881 0.96953 0.98812 1.04541 1.21738 1.01806 0.89448 1.01798 0.91769 0.91034 0.90462 0.87862 0.90653 0.90164 0.89291 0.95990 0.96449 0.78225 0.93403 0.81194 0.83733 0.82604 0.84494 0.84632 0.82516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.42 8.93 37.15 0.33 -1.08 16 2 C 0.09 0.89 5.68 -4.04 -0.02 0.87 16 3 N -0.60 -8.51 2.49 -175.43 -0.44 -8.95 16 4 C 0.11 1.87 5.51 -4.04 -0.02 1.85 16 5 C 0.14 3.01 6.58 -4.04 -0.03 2.98 16 6 N -0.73 -18.98 5.60 -59.90 -0.34 -19.32 16 7 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 8 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 9 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 10 N -0.93 -28.57 13.06 55.49 0.72 -27.85 16 11 Si 0.91 22.74 29.55 -169.99 -5.02 17.72 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 C 0.58 9.21 7.42 -13.11 -0.10 9.11 16 16 O -0.50 -9.93 13.09 5.13 0.07 -9.86 16 17 C -0.28 -3.61 6.10 -36.75 -0.22 -3.84 16 18 S 0.28 2.23 15.33 -107.50 -1.65 0.59 16 19 C -0.26 -1.93 10.90 29.10 0.32 -1.61 16 20 C -0.15 -1.45 9.97 -41.26 -0.41 -1.87 16 21 C 0.18 2.38 5.98 -84.56 -0.51 1.88 16 22 N -0.39 -5.70 2.59 -61.59 -0.16 -5.86 16 23 C 0.05 0.73 8.60 -16.63 -0.14 0.59 16 24 C -0.20 -3.13 10.86 -39.76 -0.43 -3.56 16 25 C -0.19 -2.55 10.86 -39.75 -0.43 -2.99 16 26 C -0.02 -0.29 11.25 -16.63 -0.19 -0.48 16 27 H 0.06 0.52 6.01 -44.34 -0.27 0.26 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.10 0.95 8.02 -51.93 -0.42 0.54 16 31 H 0.08 0.65 4.45 -22.04 -0.10 0.56 16 32 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 33 H 0.09 1.70 7.38 -51.93 -0.38 1.32 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.38 10.38 7.67 -40.82 -0.31 10.07 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.17 0.76 8.06 -52.48 -0.42 0.34 16 39 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.16 2.61 7.73 -52.49 -0.41 2.20 16 41 H 0.14 1.92 8.06 -52.48 -0.42 1.49 16 42 H 0.14 1.52 8.06 -52.48 -0.42 1.09 16 43 H 0.16 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 365.48 15.07 5.51 5.51 Total: -1.00 -35.17 365.48 -9.06 -44.22 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -5.65 Total: 9.43 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -2.10 Total: -5.63 kcal Atomic # 7 Polarization: -61.77 SS G_CDS: -0.21 Total: -61.98 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.07 Total: -9.86 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -1.65 Total: 0.59 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.17 -9.06 -44.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568763759.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.549 kcal (2) G-P(sol) polarization free energy of solvation -35.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds