Wall clock time and date at job start Tue Mar 31 2020 18:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46507 * 109.47103 * 2 1 4 4 C 1.46500 * 119.99591 * 262.39296 * 3 2 1 5 5 C 1.53002 * 109.46997 * 269.99990 * 4 3 2 6 6 N 1.46504 * 109.47014 * 180.02562 * 5 4 3 7 7 C 1.36940 * 119.99924 * 180.02562 * 6 5 4 8 8 H 1.08006 * 119.99592 * 359.97438 * 7 6 5 9 9 C 1.38811 * 120.00017 * 180.02562 * 7 6 5 10 10 N 1.31617 * 120.00001 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00050 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47324 * 59.99562 * 11 9 7 13 13 H 1.48501 * 109.47132 * 179.97438 * 11 9 7 14 14 H 1.48507 * 109.47166 * 299.99904 * 11 9 7 15 15 C 1.34769 * 120.00053 * 82.39152 * 3 2 1 16 16 O 1.21766 * 119.99836 * 182.89314 * 15 3 2 17 17 C 1.46114 * 120.00179 * 2.89740 * 15 3 2 18 18 S 1.75811 * 125.47548 * 350.94795 * 17 15 3 19 19 C 1.70570 * 91.67150 * 180.02562 * 18 17 15 20 20 C 1.33575 * 111.17728 * 359.75187 * 19 18 17 21 21 C 1.37351 * 125.47492 * 170.97652 * 17 15 3 22 22 N 1.39877 * 123.49252 * 359.95327 * 21 17 15 23 23 C 1.36602 * 125.67176 * 309.69677 * 22 21 17 24 24 C 1.34838 * 108.20016 * 179.82714 * 23 22 21 25 25 C 1.40966 * 107.47101 * 0.42691 * 24 23 22 26 26 C 1.34839 * 107.47380 * 359.73348 * 25 24 23 27 27 H 1.09007 * 109.47357 * 300.00486 * 1 2 3 28 28 H 1.08998 * 109.47458 * 60.00083 * 1 2 3 29 29 H 1.09001 * 109.47186 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47636 * 239.99913 * 2 1 3 31 31 H 1.09002 * 109.47031 * 119.99653 * 2 1 3 32 32 H 1.09003 * 109.47661 * 29.99838 * 4 3 2 33 33 H 1.08994 * 109.47073 * 150.00165 * 4 3 2 34 34 H 1.09007 * 109.47237 * 299.99791 * 5 4 3 35 35 H 1.08997 * 109.47449 * 60.00524 * 5 4 3 36 36 H 0.96998 * 120.00221 * 359.97438 * 6 5 4 37 37 H 0.96997 * 120.00510 * 180.02562 * 10 9 7 38 38 H 1.08007 * 124.41063 * 179.97438 * 19 18 17 39 39 H 1.07995 * 122.46091 * 180.23855 * 20 19 18 40 40 H 1.08000 * 125.90105 * 359.95456 * 23 22 21 41 41 H 1.08003 * 126.26547 * 180.18863 * 24 23 22 42 42 H 1.08007 * 126.26436 * 179.69450 * 25 24 23 43 43 H 1.08003 * 125.89723 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4208 2.0158 -1.2576 5 6 3.9089 1.7601 -1.5044 6 7 4.3116 2.3952 -2.7618 7 6 5.6079 2.2995 -3.1927 8 1 6.3335 1.7563 -2.6055 9 6 5.9895 2.9017 -4.3838 10 7 5.1054 3.5642 -5.0992 11 14 7.7579 2.7719 -4.9713 12 1 8.1125 1.3425 -5.1622 13 1 7.9056 3.4945 -6.2602 14 1 8.6615 3.3750 -3.9588 15 6 2.0972 2.0681 1.1568 16 8 2.4529 3.2326 1.1504 17 6 1.7561 1.4154 2.4188 18 16 1.0174 -0.1719 2.5795 19 6 1.0175 -0.0548 4.2811 20 6 1.5460 1.1035 4.6851 21 6 1.9604 1.9435 3.6701 22 7 2.5343 3.1994 3.8936 23 6 3.7016 3.6506 3.3462 24 6 3.9207 4.9032 3.7948 25 6 2.8567 5.2358 4.6577 26 6 2.0235 4.1765 4.7001 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 1.8391 1.5967 -2.0786 33 1 2.2418 3.0892 -1.1965 34 1 4.4907 2.1793 -0.6835 35 1 4.0879 0.6867 -1.5656 36 1 3.6598 2.8827 -3.2894 37 1 5.3719 3.9846 -5.9316 38 1 0.6427 -0.8194 4.9456 39 1 1.6391 1.3655 5.7286 40 1 4.3381 3.1001 2.6692 41 1 4.7598 5.5345 3.5425 42 1 2.7321 6.1682 5.1883 43 1 1.1103 4.1116 5.2731 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568763759.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:24 Heat of formation + Delta-G solvation = 66.452196 kcal Electronic energy + Delta-G solvation = -26296.352766 eV Core-core repulsion = 22662.844965 eV Total energy + Delta-G solvation = -3633.507801 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.51232 -41.01581 -38.70017 -37.50360 -36.50328 -33.82526 -32.87059 -31.81579 -30.81252 -29.74818 -28.88134 -26.22692 -25.32107 -24.54171 -23.51815 -22.31234 -21.41564 -21.31477 -20.07231 -19.41413 -18.99079 -18.40054 -17.21317 -17.13353 -16.44025 -16.31378 -15.79837 -15.61033 -15.34082 -15.24219 -15.22261 -15.03508 -14.80072 -14.50381 -14.20763 -13.99329 -13.69808 -13.39730 -13.20301 -13.09701 -13.00944 -12.96173 -12.82297 -12.76048 -12.39421 -12.34102 -12.19471 -11.90641 -11.59751 -11.15683 -10.99645 -10.36454 -9.91950 -9.74356 -9.09675 -9.07402 -9.01696 -7.99676 -5.30905 -0.76859 0.26401 0.81959 0.99885 1.44577 1.48918 1.53395 1.55065 1.74480 2.00899 2.06191 2.13203 2.53948 3.32780 3.36247 3.77340 3.91169 3.96479 3.99897 4.08261 4.11078 4.26606 4.27403 4.28658 4.40928 4.49680 4.52152 4.66005 4.74292 4.77187 4.84492 4.96229 4.97738 5.01343 5.05514 5.28996 5.30558 5.35572 5.37566 5.45696 6.01062 6.18165 6.21323 6.25221 6.53321 6.97950 7.27754 7.98384 8.24241 9.23418 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012565 B = 0.003415 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.811050 B = 8196.745864 C = 9773.106902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.081 3.919 3 N -0.600 5.600 4 C 0.127 3.873 5 C 0.151 3.849 6 N -0.742 5.742 7 C -0.254 4.254 8 H 0.072 0.928 9 C -0.070 4.070 10 N -0.967 5.967 11 Si 0.977 3.023 12 H -0.272 1.272 13 H -0.291 1.291 14 H -0.281 1.281 15 C 0.572 3.428 16 O -0.558 6.558 17 C -0.330 4.330 18 S 0.365 5.635 19 C -0.237 4.237 20 C -0.167 4.167 21 C 0.165 3.835 22 N -0.393 5.393 23 C 0.019 3.981 24 C -0.222 4.222 25 C -0.202 4.202 26 C -0.017 4.017 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.059 0.941 34 H -0.005 1.005 35 H 0.033 0.967 36 H 0.376 0.624 37 H 0.254 0.746 38 H 0.212 0.788 39 H 0.159 0.841 40 H 0.134 0.866 41 H 0.138 0.862 42 H 0.159 0.841 43 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.151 -13.391 22.507 30.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.043 4.043 3 N -0.332 5.332 4 C 0.004 3.996 5 C 0.023 3.977 6 N -0.385 5.385 7 C -0.385 4.385 8 H 0.090 0.910 9 C -0.263 4.263 10 N -0.617 5.617 11 Si 0.805 3.195 12 H -0.198 1.198 13 H -0.217 1.217 14 H -0.208 1.208 15 C 0.361 3.639 16 O -0.438 6.438 17 C -0.451 4.451 18 S 0.635 5.365 19 C -0.375 4.375 20 C -0.197 4.197 21 C 0.057 3.943 22 N -0.067 5.067 23 C -0.109 4.109 24 C -0.246 4.246 25 C -0.226 4.226 26 C -0.144 4.144 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.108 0.892 32 H 0.120 0.880 33 H 0.078 0.922 34 H 0.013 0.987 35 H 0.051 0.949 36 H 0.208 0.792 37 H 0.063 0.937 38 H 0.229 0.771 39 H 0.177 0.823 40 H 0.152 0.848 41 H 0.156 0.844 42 H 0.177 0.823 43 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -15.434 -14.281 21.473 30.054 hybrid contribution 1.613 1.914 0.159 2.508 sum -13.821 -12.367 21.632 28.494 Atomic orbital electron populations 1.22475 0.93109 1.05406 1.02751 1.22286 0.96705 0.80692 1.04584 1.47831 1.64187 1.15125 1.06034 1.21350 0.94635 0.98410 0.85183 1.20929 0.93702 0.95729 0.87318 1.42359 1.08894 1.64343 1.22914 1.19537 0.87778 1.27785 1.03435 0.90989 1.25608 1.02182 1.00499 0.97973 1.69805 1.35122 1.40581 1.16167 0.85173 0.79385 0.77939 0.77015 1.19769 1.21670 1.20770 1.17321 0.77551 0.85721 0.83275 1.90926 1.48564 1.17603 1.86658 1.24586 1.18923 1.06185 0.95451 1.83419 1.50694 1.06634 0.95746 1.26343 1.03200 1.01784 1.06137 1.19777 1.05516 0.94185 1.00251 1.17478 0.98234 0.86214 0.92400 1.41046 1.18184 1.10632 1.36874 1.21578 0.89997 0.97399 1.01927 1.21113 1.02907 0.95898 1.04705 1.21192 0.96527 1.00150 1.04726 1.22322 1.02331 0.88753 1.00962 0.92082 0.91834 0.86818 0.86847 0.89243 0.87992 0.92234 0.98651 0.94906 0.79203 0.93723 0.77143 0.82302 0.84824 0.84447 0.82345 0.79278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 8.93 71.98 0.64 -1.58 16 2 C 0.08 1.41 5.68 86.38 0.49 1.90 16 3 N -0.60 -17.17 2.49 -827.14 -2.06 -19.23 16 4 C 0.13 4.50 5.51 86.38 0.48 4.97 16 5 C 0.15 6.56 6.58 86.38 0.57 7.13 16 6 N -0.74 -39.88 5.60 -343.43 -1.92 -41.81 16 7 C -0.25 -14.85 9.99 84.03 0.84 -14.01 16 8 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 9 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 10 N -0.97 -60.43 13.06 21.65 0.28 -60.15 16 11 Si 0.98 47.18 29.55 68.60 2.03 49.21 16 12 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 13 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 14 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 15 C 0.57 18.96 7.42 86.29 0.64 19.60 16 16 O -0.56 -23.96 13.09 -4.56 -0.06 -24.02 16 17 C -0.33 -8.27 6.10 24.11 0.15 -8.12 16 18 S 0.36 4.41 15.33 -56.49 -0.87 3.54 16 19 C -0.24 -2.42 10.90 66.76 0.73 -1.69 16 20 C -0.17 -2.76 9.97 21.18 0.21 -2.55 16 21 C 0.17 4.18 5.98 37.62 0.22 4.41 16 22 N -0.39 -11.89 2.59 -348.78 -0.90 -12.79 16 23 C 0.02 0.68 8.60 83.17 0.72 1.39 16 24 C -0.22 -7.33 10.86 22.16 0.24 -7.09 16 25 C -0.20 -5.61 10.86 22.16 0.24 -5.37 16 26 C -0.02 -0.46 11.25 83.17 0.94 0.48 16 27 H 0.06 0.81 6.01 -7.21 -0.04 0.77 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.11 1.79 8.02 -2.39 -0.02 1.77 16 31 H 0.09 1.29 4.45 -21.39 -0.10 1.19 16 32 H 0.10 3.12 8.07 -2.39 -0.02 3.11 16 33 H 0.06 2.46 7.38 -2.39 -0.02 2.44 16 34 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 35 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.38 21.14 7.67 -92.71 -0.71 20.43 16 37 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 38 H 0.21 0.48 8.06 -2.91 -0.02 0.46 16 39 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 40 H 0.13 5.12 7.73 -2.91 -0.02 5.09 16 41 H 0.14 4.26 8.06 -2.91 -0.02 4.23 16 42 H 0.16 3.48 8.06 -2.91 -0.02 3.46 16 43 H 0.19 3.50 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -81.61 365.48 4.27 -77.35 By element: Atomic # 1 Polarization: 31.91 SS G_CDS: 0.20 Total: 32.11 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 7.57 Total: -4.20 kcal Atomic # 7 Polarization: -129.37 SS G_CDS: -4.61 Total: -133.98 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.06 Total: -24.02 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Atomic # 16 Polarization: 4.41 SS G_CDS: -0.87 Total: 3.54 kcal Total: -81.61 4.27 -77.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568763759.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.799 kcal (2) G-P(sol) polarization free energy of solvation -81.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds