Wall clock time and date at job start Tue Mar 31 2020 18:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47459 * 2 1 4 4 C 1.52994 * 109.47542 * 239.99675 * 2 1 3 5 5 C 1.52998 * 109.47624 * 175.00040 * 4 2 1 6 6 C 1.53003 * 109.47465 * 180.02562 * 5 4 2 7 7 N 1.46491 * 109.47094 * 180.02562 * 6 5 4 8 8 C 1.36940 * 119.99880 * 180.02562 * 7 6 5 9 9 H 1.07993 * 120.00224 * 359.97438 * 8 7 6 10 10 C 1.38816 * 119.99668 * 179.97438 * 8 7 6 11 11 N 1.31617 * 120.00394 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99743 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47092 * 89.99711 * 12 10 8 14 14 H 1.48499 * 109.47295 * 210.00087 * 12 10 8 15 15 H 1.48506 * 109.46996 * 330.00049 * 12 10 8 16 16 N 1.46503 * 109.46945 * 119.99786 * 2 1 3 17 17 C 1.34783 * 119.99674 * 275.00321 * 16 2 1 18 18 O 1.21613 * 120.00314 * 359.97438 * 17 16 2 19 19 C 1.47368 * 119.99704 * 180.02562 * 17 16 2 20 20 C 1.38766 * 120.55584 * 359.71195 * 19 17 16 21 21 N 1.31897 * 121.12272 * 180.25455 * 20 19 17 22 22 C 1.31674 * 122.21811 * 0.04720 * 21 20 19 23 23 C 1.39280 * 121.14086 * 359.95694 * 22 21 20 24 24 S 1.75887 * 131.39742 * 180.02562 * 23 22 21 25 25 C 1.75553 * 91.52405 * 179.97438 * 24 23 22 26 26 C 1.32479 * 110.79277 * 0.02562 * 25 24 23 27 27 C 1.40007 * 115.78125 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.47037 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47016 * 300.00755 * 1 2 3 30 30 H 1.09003 * 109.46623 * 60.00297 * 1 2 3 31 31 H 1.09006 * 109.47414 * 295.00330 * 4 2 1 32 32 H 1.09004 * 109.47070 * 55.00111 * 4 2 1 33 33 H 1.08994 * 109.47274 * 300.00321 * 5 4 2 34 34 H 1.09004 * 109.46839 * 59.99930 * 5 4 2 35 35 H 1.09007 * 109.46752 * 300.00373 * 6 5 4 36 36 H 1.08990 * 109.46987 * 60.00149 * 6 5 4 37 37 H 0.97003 * 120.00268 * 359.97438 * 7 6 5 38 38 H 0.97004 * 120.00055 * 179.97438 * 11 10 8 39 39 H 0.96992 * 120.00419 * 95.00291 * 16 2 1 40 40 H 1.08002 * 119.43434 * 0.26016 * 20 19 17 41 41 H 1.08000 * 119.42329 * 179.97438 * 22 21 20 42 42 H 1.07995 * 124.60563 * 179.97438 * 25 24 23 43 43 H 1.08005 * 122.10658 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5649 -0.6133 -1.3136 6 6 4.0749 -1.3341 -2.5631 7 7 5.5349 -1.2312 -2.6244 8 6 6.2187 -1.8047 -3.6631 9 1 5.6817 -2.3332 -4.4368 10 6 7.6022 -1.7068 -3.7214 11 7 8.2567 -1.0623 -2.7788 12 14 8.5350 -2.4897 -5.1379 13 1 8.6671 -1.5094 -6.2455 14 1 9.8854 -2.8989 -4.6753 15 1 7.7938 -3.6832 -5.6191 16 7 2.0183 -0.6906 1.1962 17 6 2.1469 -0.0181 2.3572 18 8 1.8581 1.1620 2.4117 19 6 2.6386 -0.7126 3.5604 20 6 2.9669 -2.0601 3.5125 21 7 3.4033 -2.6939 4.5837 22 6 3.5494 -2.0912 5.7452 23 6 3.2473 -0.7402 5.8987 24 16 3.3395 0.3205 7.2987 25 6 2.7542 1.6851 6.3620 26 6 2.5209 1.3289 5.1075 27 6 2.7796 -0.0115 4.7969 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.7517 -1.7716 -1.2055 32 1 1.6055 -0.2618 -2.1369 33 1 3.8533 0.4369 -1.3572 34 1 3.9995 -1.0728 -0.4258 35 1 3.7864 -2.3844 -2.5198 36 1 3.6404 -0.8743 -3.4506 37 1 6.0173 -0.7563 -1.9297 38 1 9.2235 -0.9942 -2.8194 39 1 2.2490 -1.6317 1.1528 40 1 2.8633 -2.5988 2.5822 41 1 3.9099 -2.6541 6.5935 42 1 2.6039 2.6796 6.7553 43 1 2.1551 2.0288 4.3707 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571300767.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:05 Heat of formation + Delta-G solvation = -0.285268 kcal Electronic energy + Delta-G solvation = -25146.610624 eV Core-core repulsion = 21510.208869 eV Total energy + Delta-G solvation = -3636.401755 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.96310 -40.35901 -38.02495 -37.36646 -36.47485 -34.32715 -33.39341 -31.90738 -31.41194 -30.66909 -27.24742 -25.92570 -25.58965 -24.72879 -22.70793 -22.22185 -22.19966 -21.50994 -19.55881 -19.11784 -18.59261 -17.50915 -17.21947 -16.98985 -16.63516 -16.31707 -15.84303 -15.51341 -15.44168 -15.23685 -15.19456 -15.13356 -14.90331 -14.43717 -13.88667 -13.73304 -13.44345 -13.33853 -13.19190 -13.13127 -13.00091 -12.77821 -12.39508 -12.25235 -12.07537 -12.00159 -11.86490 -11.73300 -11.50939 -11.36955 -11.04321 -10.93610 -10.64590 -10.22421 -10.10394 -9.01089 -8.93791 -7.96213 -5.25627 -0.89140 -0.37163 0.34653 0.76023 1.21685 1.46452 1.48769 1.57271 1.69555 2.05593 2.55433 2.66866 3.19349 3.37561 3.39958 3.58208 3.64005 3.67177 3.94001 3.96699 4.10649 4.16553 4.27490 4.28884 4.41177 4.47349 4.58664 4.66628 4.77988 4.83064 4.86753 4.91594 4.99551 5.03289 5.11437 5.17511 5.29372 5.31960 5.36143 5.43101 5.50305 5.54301 6.26254 6.42139 6.65626 7.09511 7.31645 8.09211 8.30810 9.27634 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012559 B = 0.002464 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.875712 B =11358.944197 C =12614.549503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.145 3.855 3 H 0.068 0.932 4 C -0.110 4.110 5 C -0.114 4.114 6 C 0.150 3.850 7 N -0.751 5.751 8 C -0.246 4.246 9 H 0.078 0.922 10 C -0.080 4.080 11 N -0.972 5.972 12 Si 0.976 3.024 13 H -0.287 1.287 14 H -0.295 1.295 15 H -0.267 1.267 16 N -0.706 5.706 17 C 0.565 3.435 18 O -0.566 6.566 19 C -0.174 4.174 20 C 0.130 3.870 21 N -0.495 5.495 22 C 0.186 3.814 23 C -0.239 4.239 24 S 0.175 5.825 25 C -0.156 4.156 26 C -0.157 4.157 27 C -0.002 4.002 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.045 0.955 34 H 0.056 0.944 35 H 0.027 0.973 36 H 0.021 0.979 37 H 0.371 0.629 38 H 0.251 0.749 39 H 0.410 0.590 40 H 0.183 0.817 41 H 0.198 0.802 42 H 0.205 0.795 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.020 0.947 21.451 28.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.041 3.959 3 H 0.086 0.914 4 C -0.148 4.148 5 C -0.152 4.152 6 C 0.024 3.976 7 N -0.394 5.394 8 C -0.378 4.378 9 H 0.096 0.904 10 C -0.272 4.272 11 N -0.623 5.623 12 Si 0.804 3.196 13 H -0.214 1.214 14 H -0.222 1.222 15 H -0.191 1.191 16 N -0.358 5.358 17 C 0.352 3.648 18 O -0.447 6.447 19 C -0.181 4.181 20 C -0.023 4.023 21 N -0.204 5.204 22 C 0.019 3.981 23 C -0.356 4.356 24 S 0.439 5.561 25 C -0.292 4.292 26 C -0.186 4.186 27 C -0.019 4.019 28 H 0.092 0.908 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.045 0.955 36 H 0.039 0.961 37 H 0.202 0.798 38 H 0.060 0.940 39 H 0.248 0.752 40 H 0.200 0.800 41 H 0.214 0.786 42 H 0.222 0.778 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -17.629 0.637 22.669 28.724 hybrid contribution 0.579 0.756 -2.038 2.249 sum -17.050 1.393 20.632 26.801 Atomic orbital electron populations 1.22099 0.93541 1.03137 1.02454 1.21038 0.94914 0.96645 0.83330 0.91364 1.21769 0.93450 1.02405 0.97158 1.21606 0.96582 0.99723 0.97300 1.20864 0.83089 0.97475 0.96211 1.42669 1.02620 1.65971 1.28121 1.19683 0.90013 1.26386 1.01711 0.90421 1.25638 0.97571 1.02499 1.01455 1.69832 1.07059 1.48947 1.36478 0.85103 0.77641 0.78286 0.78523 1.21374 1.22178 1.19133 1.45986 1.66223 1.14558 1.08984 1.18007 0.77292 0.86152 0.83372 1.90700 1.51989 1.16622 1.85359 1.20835 1.07690 0.95935 0.93624 1.23062 0.91260 0.89900 0.98032 1.67825 1.14462 1.38595 0.99478 1.22973 0.90375 0.88709 0.96014 1.24147 1.10717 1.00943 0.99804 1.83993 1.66940 0.97687 1.07527 1.26048 1.01989 1.04775 0.96401 1.20222 1.05017 0.95174 0.98207 1.18534 0.96562 0.94271 0.92570 0.90828 0.93746 0.90059 0.89147 0.88786 0.93586 0.92537 0.95528 0.96139 0.79779 0.94029 0.75209 0.80045 0.78558 0.77785 0.83229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.48 71.98 0.68 -2.00 16 2 C 0.14 3.08 2.57 44.99 0.12 3.19 16 3 H 0.07 1.80 7.58 -2.38 -0.02 1.78 16 4 C -0.11 -2.28 4.75 30.59 0.15 -2.14 16 5 C -0.11 -3.50 5.22 30.59 0.16 -3.34 16 6 C 0.15 5.84 6.26 86.38 0.54 6.38 16 7 N -0.75 -39.18 5.60 -343.47 -1.92 -41.11 16 8 C -0.25 -14.01 9.99 84.03 0.84 -13.17 16 9 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 10 C -0.08 -4.67 5.50 84.86 0.47 -4.21 16 11 N -0.97 -60.99 13.06 21.65 0.28 -60.71 16 12 Si 0.98 46.67 29.55 68.60 2.03 48.70 16 13 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 14 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 15 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 16 N -0.71 -15.06 4.48 -445.84 -2.00 -17.05 16 17 C 0.56 14.92 7.73 86.65 0.67 15.59 16 18 O -0.57 -18.20 14.13 -4.07 -0.06 -18.26 16 19 C -0.17 -4.25 5.94 -19.60 -0.12 -4.36 16 20 C 0.13 2.77 10.67 84.81 0.90 3.68 16 21 N -0.49 -10.69 10.32 -194.65 -2.01 -12.70 16 22 C 0.19 3.35 11.20 84.97 0.95 4.30 16 23 C -0.24 -4.63 6.52 22.98 0.15 -4.48 16 24 S 0.18 2.37 23.29 -56.49 -1.32 1.05 16 25 C -0.16 -2.36 11.10 66.69 0.74 -1.62 16 26 C -0.16 -3.48 9.43 21.57 0.20 -3.28 16 27 C 0.00 -0.05 5.88 -21.24 -0.12 -0.18 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.06 1.77 7.75 -2.39 -0.02 1.75 16 35 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.37 20.80 7.67 -92.71 -0.71 20.09 16 38 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 39 H 0.41 6.88 6.64 -92.71 -0.62 6.27 16 40 H 0.18 2.88 6.37 -2.91 -0.02 2.86 16 41 H 0.20 2.06 8.06 -2.91 -0.02 2.04 16 42 H 0.21 1.69 8.06 -2.91 -0.02 1.66 16 43 H 0.15 3.81 6.28 -2.91 -0.02 3.79 16 Total: -1.00 -75.66 373.69 1.06 -74.60 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: -0.27 Total: 31.12 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: 6.33 Total: -5.64 kcal Atomic # 7 Polarization: -125.92 SS G_CDS: -5.65 Total: -131.57 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.06 Total: -18.26 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -1.32 Total: 1.05 kcal Total: -75.66 1.06 -74.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571300767.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.315 kcal (2) G-P(sol) polarization free energy of solvation -75.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds