Wall clock time and date at job start Tue Mar 31 2020 18:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47139 * 2 1 4 4 C 1.52998 * 109.47049 * 120.00239 * 2 1 3 5 5 C 1.53007 * 109.47117 * 184.99911 * 4 2 1 6 6 C 1.52998 * 109.47117 * 180.02562 * 5 4 2 7 7 N 1.46501 * 109.46842 * 179.97438 * 6 5 4 8 8 C 1.36937 * 119.99959 * 179.97438 * 7 6 5 9 9 H 1.08004 * 119.99768 * 0.02562 * 8 7 6 10 10 C 1.38810 * 120.00073 * 180.02562 * 8 7 6 11 11 N 1.31616 * 120.00048 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00144 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47305 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.47324 * 119.99626 * 12 10 8 15 15 H 1.48498 * 109.47225 * 240.00331 * 12 10 8 16 16 N 1.46501 * 109.46991 * 240.00102 * 2 1 3 17 17 C 1.34776 * 120.00262 * 84.99653 * 16 2 1 18 18 O 1.21621 * 119.99555 * 0.02562 * 17 16 2 19 19 C 1.47365 * 120.00191 * 179.97438 * 17 16 2 20 20 C 1.38760 * 120.55601 * 0.02832 * 19 17 16 21 21 N 1.31896 * 121.12497 * 179.97438 * 20 19 17 22 22 C 1.31673 * 122.21787 * 359.97438 * 21 20 19 23 23 C 1.39284 * 121.13827 * 0.02562 * 22 21 20 24 24 S 1.75888 * 131.39796 * 179.97438 * 23 22 21 25 25 C 1.75543 * 91.52428 * 179.84910 * 24 23 22 26 26 C 1.32475 * 110.79962 * 0.31101 * 25 24 23 27 27 C 1.40013 * 115.77668 * 359.62060 * 26 25 24 28 28 H 1.09004 * 109.47008 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46783 * 299.99684 * 1 2 3 30 30 H 1.08993 * 109.47324 * 59.99612 * 1 2 3 31 31 H 1.08996 * 109.47244 * 304.99690 * 4 2 1 32 32 H 1.09001 * 109.47474 * 64.99819 * 4 2 1 33 33 H 1.09006 * 109.46852 * 299.99848 * 5 4 2 34 34 H 1.09001 * 109.47023 * 59.99632 * 5 4 2 35 35 H 1.08996 * 109.47244 * 299.99780 * 6 5 4 36 36 H 1.09001 * 109.47474 * 59.99909 * 6 5 4 37 37 H 0.97005 * 120.00511 * 359.97438 * 7 6 5 38 38 H 0.97003 * 120.00129 * 179.97438 * 11 10 8 39 39 H 0.96998 * 119.99814 * 264.99971 * 16 2 1 40 40 H 1.08006 * 119.43906 * 359.97438 * 20 19 17 41 41 H 1.07996 * 119.43124 * 179.97438 * 22 21 20 42 42 H 1.07998 * 124.60074 * 180.18288 * 25 24 23 43 43 H 1.08002 * 122.11567 * 179.90092 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5648 -0.6134 1.3137 6 6 4.0749 -1.3352 2.5625 7 7 5.5350 -1.2323 2.6238 8 6 6.2188 -1.8067 3.6620 9 1 5.6817 -2.3359 4.4353 10 6 7.6022 -1.7088 3.7204 11 7 8.2567 -1.0635 2.7783 12 14 8.5351 -2.4929 5.1361 13 1 7.5749 -3.1546 6.0556 14 1 9.4856 -3.5022 4.6040 15 1 9.2865 -1.4459 5.8740 16 7 2.0183 -0.6906 -1.1962 17 6 2.1469 -0.0183 -2.3572 18 8 1.8581 1.1619 -2.4117 19 6 2.6387 -0.7128 -3.5603 20 6 2.9720 -2.0589 -3.5111 21 7 3.4127 -2.6918 -4.5811 22 6 3.5589 -2.0891 -5.7426 23 6 3.2520 -0.7393 -5.8974 24 16 3.3431 0.3211 -7.2977 25 6 2.7456 1.6825 -6.3643 26 6 2.5164 1.3276 -5.1087 27 6 2.7794 -0.0118 -4.7969 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.6054 -0.2618 2.1369 32 1 1.7516 -1.7716 1.2056 33 1 3.9994 -1.0729 0.4259 34 1 3.8532 0.4369 1.3573 35 1 3.6403 -0.8761 3.4505 36 1 3.7865 -2.3855 2.5184 37 1 6.0174 -0.7574 1.9291 38 1 9.2234 -0.9947 2.8193 39 1 2.2490 -1.6317 -1.1526 40 1 2.8688 -2.5976 -2.5806 41 1 3.9239 -2.6508 -6.5897 42 1 2.5883 2.6752 -6.7595 43 1 2.1456 2.0261 -4.3732 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571300768.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:10 Heat of formation + Delta-G solvation = 22.219509 kcal Electronic energy + Delta-G solvation = -25146.347867 eV Core-core repulsion = 21510.921993 eV Total energy + Delta-G solvation = -3635.425874 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.15181 -39.45872 -36.98421 -36.47363 -34.84985 -33.02969 -32.03416 -30.70762 -30.60818 -29.35405 -25.75912 -25.04324 -24.80316 -23.03997 -21.63274 -21.42248 -20.82926 -20.61293 -18.75223 -17.77526 -17.01472 -16.71524 -16.38656 -16.13237 -15.39884 -14.79321 -14.67025 -14.53526 -14.46242 -14.40314 -14.01767 -13.76772 -13.49536 -13.06663 -12.99699 -12.72613 -12.57903 -12.38560 -12.23458 -12.12070 -11.33729 -11.30480 -11.19621 -10.86839 -10.81712 -10.56820 -10.43307 -10.40428 -10.25261 -9.98184 -9.76541 -9.68716 -9.44295 -9.21643 -8.86201 -8.25840 -6.90391 -5.74939 -3.03730 -0.11024 0.39312 1.02217 1.46438 1.98667 2.59024 2.92561 3.44145 3.49352 3.49488 3.51925 3.91918 4.11689 4.35305 4.38693 4.56394 4.69589 4.71635 4.89707 4.94691 5.03101 5.10813 5.19044 5.39514 5.49460 5.54860 5.58551 5.59971 5.74227 5.76191 5.91139 5.93953 6.03334 6.03843 6.09800 6.18828 6.34635 6.39674 6.40622 6.86208 6.89574 7.29376 7.42661 7.71407 8.00013 8.44007 9.54863 10.13881 10.47971 11.48083 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012557 B = 0.002466 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.284359 B =11353.717822 C =12613.096041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 H 0.091 0.909 4 C -0.124 4.124 5 C -0.126 4.126 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.239 4.239 9 H 0.070 0.930 10 C -0.016 4.016 11 N -0.933 5.933 12 Si 0.907 3.093 13 H -0.280 1.280 14 H -0.291 1.291 15 H -0.291 1.291 16 N -0.713 5.713 17 C 0.567 3.433 18 O -0.533 6.533 19 C -0.150 4.150 20 C 0.129 3.871 21 N -0.473 5.473 22 C 0.182 3.818 23 C -0.218 4.218 24 S 0.120 5.880 25 C -0.171 4.171 26 C -0.124 4.124 27 C 0.018 3.982 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.017 0.983 36 H 0.017 0.983 37 H 0.383 0.617 38 H 0.254 0.746 39 H 0.400 0.600 40 H 0.165 0.835 41 H 0.167 0.833 42 H 0.176 0.824 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.158 2.093 -20.831 27.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.038 3.962 3 H 0.110 0.890 4 C -0.162 4.162 5 C -0.164 4.164 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.370 4.370 9 H 0.088 0.912 10 C -0.212 4.212 11 N -0.582 5.582 12 Si 0.738 3.262 13 H -0.206 1.206 14 H -0.219 1.219 15 H -0.219 1.219 16 N -0.365 5.365 17 C 0.353 3.647 18 O -0.411 6.411 19 C -0.157 4.157 20 C -0.024 4.024 21 N -0.182 5.182 22 C 0.014 3.986 23 C -0.336 4.336 24 S 0.382 5.618 25 C -0.307 4.307 26 C -0.153 4.153 27 C 0.001 3.999 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.035 0.965 36 H 0.035 0.965 37 H 0.217 0.783 38 H 0.064 0.936 39 H 0.236 0.764 40 H 0.182 0.818 41 H 0.184 0.816 42 H 0.193 0.807 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -16.717 1.829 -22.056 27.736 hybrid contribution 0.336 0.357 1.953 2.014 sum -16.381 2.186 -20.103 26.024 Atomic orbital electron populations 1.22175 0.95240 1.02126 1.02515 1.21103 0.93707 0.97880 0.83511 0.89044 1.21867 0.96939 1.00846 0.96539 1.21746 0.93580 1.01526 0.99583 1.20645 0.86207 0.96446 0.94170 1.42394 1.00198 1.66252 1.29047 1.19284 0.89446 1.27009 1.01264 0.91157 1.24758 0.96474 1.01256 0.98673 1.69674 1.07132 1.47023 1.34394 0.86116 0.79906 0.78506 0.81668 1.20556 1.21855 1.21862 1.46026 1.66804 1.14143 1.09510 1.17791 0.77717 0.86463 0.82702 1.90726 1.50354 1.15249 1.84795 1.20829 1.05882 0.95307 0.93683 1.22790 0.92038 0.90267 0.97293 1.67763 1.13441 1.38111 0.98859 1.22428 0.91904 0.88622 0.95596 1.23880 1.10345 1.00339 0.99007 1.84198 1.68129 0.99660 1.09801 1.25614 1.04677 1.03196 0.97218 1.20288 1.02389 0.95383 0.97211 1.18255 0.96125 0.93573 0.91923 0.92436 0.91379 0.92289 0.90069 0.91301 0.92096 0.91899 0.96484 0.96538 0.78343 0.93574 0.76401 0.81802 0.81628 0.80708 0.81455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.48 37.16 0.35 -1.16 16 2 C 0.14 1.54 2.57 -67.93 -0.17 1.37 16 3 H 0.09 1.17 7.58 -51.93 -0.39 0.78 16 4 C -0.12 -1.39 4.75 -26.73 -0.13 -1.52 16 5 C -0.13 -1.96 5.22 -26.73 -0.14 -2.10 16 6 C 0.15 3.04 6.26 -4.04 -0.03 3.02 16 7 N -0.73 -19.04 5.60 -59.91 -0.34 -19.37 16 8 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 9 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 10 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 11 N -0.93 -28.80 13.06 55.49 0.72 -28.07 16 12 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 15 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 16 N -0.71 -7.61 4.48 -54.90 -0.25 -7.86 16 17 C 0.57 7.17 7.73 -12.55 -0.10 7.07 16 18 O -0.53 -8.04 14.13 5.26 0.07 -7.97 16 19 C -0.15 -1.77 5.94 -104.21 -0.62 -2.39 16 20 C 0.13 1.38 10.67 -17.33 -0.18 1.19 16 21 N -0.47 -5.27 10.32 -12.88 -0.13 -5.40 16 22 C 0.18 1.74 11.20 -17.23 -0.19 1.55 16 23 C -0.22 -2.21 6.52 -38.48 -0.25 -2.46 16 24 S 0.12 0.93 23.29 -107.50 -2.50 -1.57 16 25 C -0.17 -1.40 11.10 28.82 0.32 -1.08 16 26 C -0.12 -1.33 9.43 -40.83 -0.39 -1.71 16 27 C 0.02 0.21 5.88 -106.74 -0.63 -0.42 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.96 7.75 -51.93 -0.40 0.56 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.38 10.48 7.67 -40.82 -0.31 10.17 16 38 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.40 3.50 6.64 -40.82 -0.27 3.23 16 40 H 0.16 1.34 6.37 -52.48 -0.33 1.00 16 41 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.18 0.92 8.06 -52.49 -0.42 0.49 16 43 H 0.17 1.95 6.28 -52.49 -0.33 1.62 16 LS Contribution 373.69 15.07 5.63 5.63 Total: -1.00 -34.45 373.69 -10.03 -44.48 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -5.82 Total: 8.62 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -2.40 Total: -6.16 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: 0.01 Total: -60.70 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: 0.07 Total: -7.97 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.50 Total: -1.57 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.45 -10.03 -44.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571300768.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.702 kcal (2) G-P(sol) polarization free energy of solvation -34.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds