Wall clock time and date at job start Tue Mar 31 2020 18:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47139 * 2 1 4 4 C 1.52998 * 109.47049 * 120.00239 * 2 1 3 5 5 C 1.53007 * 109.47117 * 184.99911 * 4 2 1 6 6 C 1.52998 * 109.47117 * 180.02562 * 5 4 2 7 7 N 1.46501 * 109.46842 * 179.97438 * 6 5 4 8 8 C 1.36937 * 119.99959 * 179.97438 * 7 6 5 9 9 H 1.08004 * 119.99768 * 0.02562 * 8 7 6 10 10 C 1.38810 * 120.00073 * 180.02562 * 8 7 6 11 11 N 1.31616 * 120.00048 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00144 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47305 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.47324 * 119.99626 * 12 10 8 15 15 H 1.48498 * 109.47225 * 240.00331 * 12 10 8 16 16 N 1.46501 * 109.46991 * 240.00102 * 2 1 3 17 17 C 1.34776 * 120.00262 * 84.99653 * 16 2 1 18 18 O 1.21621 * 119.99555 * 0.02562 * 17 16 2 19 19 C 1.47365 * 120.00191 * 179.97438 * 17 16 2 20 20 C 1.38760 * 120.55601 * 0.02832 * 19 17 16 21 21 N 1.31896 * 121.12497 * 179.97438 * 20 19 17 22 22 C 1.31673 * 122.21787 * 359.97438 * 21 20 19 23 23 C 1.39284 * 121.13827 * 0.02562 * 22 21 20 24 24 S 1.75888 * 131.39796 * 179.97438 * 23 22 21 25 25 C 1.75543 * 91.52428 * 179.84910 * 24 23 22 26 26 C 1.32475 * 110.79962 * 0.31101 * 25 24 23 27 27 C 1.40013 * 115.77668 * 359.62060 * 26 25 24 28 28 H 1.09004 * 109.47008 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46783 * 299.99684 * 1 2 3 30 30 H 1.08993 * 109.47324 * 59.99612 * 1 2 3 31 31 H 1.08996 * 109.47244 * 304.99690 * 4 2 1 32 32 H 1.09001 * 109.47474 * 64.99819 * 4 2 1 33 33 H 1.09006 * 109.46852 * 299.99848 * 5 4 2 34 34 H 1.09001 * 109.47023 * 59.99632 * 5 4 2 35 35 H 1.08996 * 109.47244 * 299.99780 * 6 5 4 36 36 H 1.09001 * 109.47474 * 59.99909 * 6 5 4 37 37 H 0.97005 * 120.00511 * 359.97438 * 7 6 5 38 38 H 0.97003 * 120.00129 * 179.97438 * 11 10 8 39 39 H 0.96998 * 119.99814 * 264.99971 * 16 2 1 40 40 H 1.08006 * 119.43906 * 359.97438 * 20 19 17 41 41 H 1.07996 * 119.43124 * 179.97438 * 22 21 20 42 42 H 1.07998 * 124.60074 * 180.18288 * 25 24 23 43 43 H 1.08002 * 122.11567 * 179.90092 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5648 -0.6134 1.3137 6 6 4.0749 -1.3352 2.5625 7 7 5.5350 -1.2323 2.6238 8 6 6.2188 -1.8067 3.6620 9 1 5.6817 -2.3359 4.4353 10 6 7.6022 -1.7088 3.7204 11 7 8.2567 -1.0635 2.7783 12 14 8.5351 -2.4929 5.1361 13 1 7.5749 -3.1546 6.0556 14 1 9.4856 -3.5022 4.6040 15 1 9.2865 -1.4459 5.8740 16 7 2.0183 -0.6906 -1.1962 17 6 2.1469 -0.0183 -2.3572 18 8 1.8581 1.1619 -2.4117 19 6 2.6387 -0.7128 -3.5603 20 6 2.9720 -2.0589 -3.5111 21 7 3.4127 -2.6918 -4.5811 22 6 3.5589 -2.0891 -5.7426 23 6 3.2520 -0.7393 -5.8974 24 16 3.3431 0.3211 -7.2977 25 6 2.7456 1.6825 -6.3643 26 6 2.5164 1.3276 -5.1087 27 6 2.7794 -0.0118 -4.7969 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.6054 -0.2618 2.1369 32 1 1.7516 -1.7716 1.2056 33 1 3.9994 -1.0729 0.4259 34 1 3.8532 0.4369 1.3573 35 1 3.6403 -0.8761 3.4505 36 1 3.7865 -2.3855 2.5184 37 1 6.0174 -0.7574 1.9291 38 1 9.2234 -0.9947 2.8193 39 1 2.2490 -1.6317 -1.1526 40 1 2.8688 -2.5976 -2.5806 41 1 3.9239 -2.6508 -6.5897 42 1 2.5883 2.6752 -6.7595 43 1 2.1456 2.0261 -4.3732 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571300768.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:09 Heat of formation + Delta-G solvation = -0.368875 kcal Electronic energy + Delta-G solvation = -25147.327373 eV Core-core repulsion = 21510.921993 eV Total energy + Delta-G solvation = -3636.405380 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.96301 -40.35868 -38.02446 -37.36671 -36.47563 -34.32751 -33.39389 -31.90770 -31.41203 -30.66955 -27.24863 -25.92608 -25.58977 -24.73079 -22.70858 -22.22196 -22.19995 -21.51005 -19.55904 -19.11935 -18.59269 -17.50950 -17.21971 -16.98940 -16.63600 -16.31713 -15.84316 -15.51424 -15.44460 -15.23394 -15.19637 -15.13382 -14.90228 -14.43722 -13.88649 -13.73337 -13.44477 -13.33882 -13.19404 -13.13236 -13.00172 -12.80943 -12.39029 -12.22708 -12.05829 -12.00074 -11.86774 -11.73024 -11.50955 -11.36918 -11.04339 -10.94850 -10.64599 -10.22428 -10.10415 -9.01119 -8.93800 -7.96413 -5.25768 -0.89140 -0.37176 0.34645 0.76031 1.21696 1.46562 1.47797 1.57987 1.69543 2.05578 2.55256 2.66848 3.19350 3.37557 3.39922 3.58205 3.63987 3.67169 3.93982 3.96658 4.10658 4.16546 4.27465 4.28813 4.41243 4.47338 4.58673 4.66617 4.77984 4.83084 4.86743 4.91591 4.99575 5.03273 5.11476 5.17521 5.29367 5.31990 5.36144 5.43164 5.50445 5.54315 6.26227 6.42117 6.65620 7.09504 7.31579 8.09056 8.30642 9.27637 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012557 B = 0.002466 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.284359 B =11353.717822 C =12613.096041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.145 3.855 3 H 0.068 0.932 4 C -0.110 4.110 5 C -0.114 4.114 6 C 0.150 3.850 7 N -0.752 5.752 8 C -0.245 4.245 9 H 0.078 0.922 10 C -0.080 4.080 11 N -0.972 5.972 12 Si 0.976 3.024 13 H -0.264 1.264 14 H -0.292 1.292 15 H -0.293 1.293 16 N -0.705 5.705 17 C 0.564 3.436 18 O -0.566 6.566 19 C -0.174 4.174 20 C 0.130 3.870 21 N -0.495 5.495 22 C 0.186 3.814 23 C -0.239 4.239 24 S 0.176 5.824 25 C -0.156 4.156 26 C -0.157 4.157 27 C -0.002 4.002 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.043 0.957 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.045 0.955 35 H 0.021 0.979 36 H 0.027 0.973 37 H 0.371 0.629 38 H 0.251 0.749 39 H 0.410 0.590 40 H 0.183 0.817 41 H 0.198 0.802 42 H 0.205 0.795 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.075 0.972 -21.429 28.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.041 3.959 3 H 0.086 0.914 4 C -0.148 4.148 5 C -0.152 4.152 6 C 0.024 3.976 7 N -0.394 5.394 8 C -0.376 4.376 9 H 0.096 0.904 10 C -0.272 4.272 11 N -0.623 5.623 12 Si 0.804 3.196 13 H -0.188 1.188 14 H -0.219 1.219 15 H -0.221 1.221 16 N -0.357 5.357 17 C 0.352 3.648 18 O -0.447 6.447 19 C -0.181 4.181 20 C -0.023 4.023 21 N -0.204 5.204 22 C 0.019 3.981 23 C -0.356 4.356 24 S 0.439 5.561 25 C -0.292 4.292 26 C -0.186 4.186 27 C -0.019 4.019 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.039 0.961 36 H 0.045 0.955 37 H 0.202 0.798 38 H 0.060 0.940 39 H 0.248 0.752 40 H 0.200 0.800 41 H 0.214 0.786 42 H 0.222 0.778 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -17.683 0.669 -22.636 28.732 hybrid contribution 0.586 0.744 2.018 2.229 sum -17.097 1.413 -20.618 26.822 Atomic orbital electron populations 1.22097 0.93542 1.03138 1.02454 1.21036 0.94915 0.96646 0.83331 0.91363 1.21770 0.93450 1.02405 0.97156 1.21608 0.96580 0.99719 0.97305 1.20867 0.83080 0.97481 0.96218 1.42680 1.02625 1.65915 1.28170 1.19716 0.89997 1.26196 1.01722 0.90411 1.25634 0.97582 1.02509 1.01481 1.69838 1.07032 1.48936 1.36519 0.85039 0.78469 0.77351 0.78704 1.18775 1.21949 1.22069 1.45985 1.66216 1.14557 1.08986 1.18007 0.77291 0.86154 0.83373 1.90702 1.51989 1.16621 1.85367 1.20831 1.07677 0.95949 0.93620 1.23060 0.91235 0.89920 0.98040 1.67824 1.14488 1.38556 0.99496 1.22973 0.90406 0.88701 0.95990 1.24150 1.10675 1.00955 0.99836 1.83992 1.66563 0.97936 1.07651 1.26046 1.01985 1.04790 0.96397 1.20222 1.05032 0.95197 0.98166 1.18537 0.96559 0.94265 0.92577 0.90829 0.90057 0.93748 0.88783 0.89146 0.92545 0.93576 0.96128 0.95514 0.79778 0.94041 0.75209 0.80047 0.78561 0.77783 0.83226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.48 71.98 0.68 -2.00 16 2 C 0.14 3.07 2.57 44.99 0.12 3.19 16 3 H 0.07 1.80 7.58 -2.39 -0.02 1.78 16 4 C -0.11 -2.28 4.75 30.60 0.15 -2.13 16 5 C -0.11 -3.49 5.22 30.60 0.16 -3.33 16 6 C 0.15 5.83 6.26 86.38 0.54 6.37 16 7 N -0.75 -39.15 5.60 -343.45 -1.92 -41.07 16 8 C -0.24 -13.91 9.99 84.03 0.84 -13.07 16 9 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 10 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 11 N -0.97 -60.98 13.06 21.65 0.28 -60.69 16 12 Si 0.98 46.69 29.55 68.60 2.03 48.72 16 13 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 14 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 15 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 16 N -0.71 -15.05 4.48 -445.86 -2.00 -17.04 16 17 C 0.56 14.92 7.73 86.65 0.67 15.59 16 18 O -0.57 -18.20 14.13 -4.10 -0.06 -18.26 16 19 C -0.17 -4.25 5.94 -19.60 -0.12 -4.36 16 20 C 0.13 2.77 10.67 84.81 0.90 3.68 16 21 N -0.49 -10.70 10.32 -194.65 -2.01 -12.71 16 22 C 0.19 3.35 11.20 84.97 0.95 4.30 16 23 C -0.24 -4.63 6.52 22.98 0.15 -4.48 16 24 S 0.18 2.37 23.29 -56.49 -1.32 1.05 16 25 C -0.16 -2.36 11.10 66.69 0.74 -1.62 16 26 C -0.16 -3.48 9.43 21.57 0.20 -3.28 16 27 C 0.00 -0.06 5.88 -21.24 -0.12 -0.18 16 28 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.06 1.77 7.75 -2.38 -0.02 1.75 16 34 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.37 20.79 7.67 -92.70 -0.71 20.08 16 38 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 39 H 0.41 6.88 6.64 -92.71 -0.62 6.26 16 40 H 0.18 2.88 6.37 -2.91 -0.02 2.87 16 41 H 0.20 2.07 8.06 -2.91 -0.02 2.04 16 42 H 0.21 1.68 8.06 -2.91 -0.02 1.66 16 43 H 0.15 3.81 6.28 -2.91 -0.02 3.79 16 Total: -1.00 -75.68 373.69 1.06 -74.62 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: -0.27 Total: 30.95 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: 6.33 Total: -5.56 kcal Atomic # 7 Polarization: -125.87 SS G_CDS: -5.65 Total: -131.52 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.06 Total: -18.26 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -1.32 Total: 1.05 kcal Total: -75.68 1.06 -74.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571300768.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.250 kcal (2) G-P(sol) polarization free energy of solvation -75.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds