Wall clock time and date at job start Tue Mar 31 2020 18:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.47095 * 2 1 4 4 N 1.46496 * 109.47353 * 240.00213 * 2 1 3 5 5 C 1.34772 * 120.00222 * 84.99928 * 4 2 1 6 6 O 1.21283 * 119.99912 * 359.97438 * 5 4 2 7 7 C 1.50700 * 119.99971 * 180.02562 * 5 4 2 8 8 H 1.09001 * 109.46817 * 319.98961 * 7 5 4 9 9 N 1.46910 * 109.46728 * 199.99907 * 7 5 4 10 10 C 1.52992 * 109.47798 * 79.99728 * 7 5 4 11 11 C 1.52997 * 109.47482 * 185.00026 * 10 7 5 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 7 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99594 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99875 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47061 * 90.00257 * 16 14 12 18 18 H 1.48497 * 109.46906 * 209.99430 * 16 14 12 19 19 H 1.48498 * 109.47403 * 329.99876 * 16 14 12 20 20 C 1.50699 * 109.47121 * 119.99905 * 2 1 3 21 21 C 1.38788 * 119.96330 * 79.72401 * 20 2 1 22 22 C 1.36189 * 120.77605 * 179.73736 * 21 20 2 23 23 C 1.40972 * 120.42177 * 0.55999 * 22 21 20 24 24 N 1.34661 * 129.68639 * 179.72086 * 23 22 21 25 25 C 1.27930 * 117.84855 * 179.97438 * 24 23 22 26 26 S 1.70649 * 111.51869 * 0.02562 * 25 24 23 27 27 C 1.39915 * 118.50952 * 359.70574 * 23 22 21 28 28 C 1.37654 * 119.96802 * 260.00216 * 20 2 1 29 29 H 1.09001 * 109.46762 * 59.99885 * 1 2 3 30 30 H 1.08991 * 109.46831 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47194 * 299.99974 * 1 2 3 32 32 H 0.97003 * 119.99378 * 265.00072 * 4 2 1 33 33 H 1.00892 * 110.99957 * 299.99600 * 9 7 5 34 34 H 1.00899 * 110.99816 * 63.94833 * 9 7 5 35 35 H 1.09002 * 109.47103 * 64.99779 * 10 7 5 36 36 H 1.08998 * 109.46862 * 305.00591 * 10 7 5 37 37 H 1.09002 * 109.47153 * 59.99783 * 11 10 7 38 38 H 1.09001 * 109.46832 * 299.99974 * 11 10 7 39 39 H 0.97002 * 119.99739 * 180.02562 * 15 14 12 40 40 H 1.07993 * 119.61371 * 0.02562 * 21 20 2 41 41 H 1.07995 * 119.78465 * 180.24267 * 22 21 20 42 42 H 1.07998 * 124.23804 * 179.97438 * 25 24 23 43 43 H 1.08010 * 120.02328 * 359.95503 * 28 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1961 5 6 2.1472 -0.0182 -2.3571 6 8 1.8583 1.1584 -2.4117 7 6 2.6490 -0.7288 -3.5877 8 1 3.4552 -1.4084 -3.3114 9 7 3.1504 0.2587 -4.5530 10 6 1.5052 -1.5244 -4.2195 11 6 2.0420 -2.3437 -5.3948 12 6 0.9153 -3.1279 -6.0167 13 1 -0.0838 -3.0493 -5.6143 14 6 1.1599 -3.9448 -7.1002 15 7 0.1765 -4.6286 -7.6432 16 14 2.8879 -4.0800 -7.7967 17 1 3.6109 -5.1842 -7.1160 18 1 2.8139 -4.3607 -9.2530 19 1 3.6125 -2.8030 -7.5747 20 6 2.0324 -0.7104 1.2305 21 6 2.0612 -2.0975 1.2668 22 6 2.5169 -2.7564 2.3682 23 6 2.9575 -2.0381 3.4983 24 7 3.4335 -2.4915 4.6736 25 6 3.7728 -1.6277 5.5541 26 16 3.5261 -0.0342 4.9955 27 6 2.9207 -0.6400 3.4571 28 6 2.4568 0.0171 2.3193 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 2.2491 -1.6317 -1.1525 33 1 2.4213 0.9009 -4.8249 34 1 3.9483 0.7532 -4.1830 35 1 0.7381 -0.8369 -4.5761 36 1 1.0747 -2.1948 -3.4757 37 1 2.8091 -3.0311 -5.0381 38 1 2.4724 -1.6732 -6.1386 39 1 0.3486 -5.2036 -8.4053 40 1 1.7227 -2.6609 0.4100 41 1 2.5359 -3.8361 2.3777 42 1 4.1654 -1.8759 6.5291 43 1 2.4305 1.0965 2.2916 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576180725.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:28 Heat of formation + Delta-G solvation = 9.904294 kcal Electronic energy + Delta-G solvation = -25182.645240 eV Core-core repulsion = 21546.685338 eV Total energy + Delta-G solvation = -3635.959902 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.00434 -39.97987 -37.99523 -35.56633 -35.00393 -32.77577 -31.91852 -31.17638 -30.49836 -29.19792 -26.81318 -25.64451 -24.21441 -23.41436 -22.68671 -21.07800 -20.43403 -19.92116 -18.91024 -17.53858 -17.06261 -16.66374 -16.29175 -16.16680 -15.48860 -15.21454 -15.10770 -14.76437 -14.36581 -14.15632 -14.11471 -14.02448 -13.60696 -13.45293 -12.93916 -12.88414 -12.59006 -12.42033 -12.31543 -11.89330 -11.67117 -11.49716 -11.21405 -11.04985 -10.88064 -10.59808 -10.42843 -10.12136 -9.93981 -9.79316 -9.59268 -9.29750 -9.12013 -9.07398 -8.56359 -8.50594 -8.40591 -6.00058 -3.97721 -0.06939 0.70086 0.79791 1.26357 1.85777 2.64917 3.06036 3.28046 3.35578 3.43707 3.51529 3.55031 4.08026 4.21374 4.51033 4.58931 4.68879 4.74583 4.76444 4.91121 4.98492 5.08540 5.15542 5.33889 5.36359 5.38365 5.43891 5.62871 5.65278 5.67013 5.72935 5.94428 6.01545 6.20226 6.26777 6.36318 6.45779 6.85580 7.11845 7.21386 7.34827 7.44997 7.58290 7.64588 7.85893 8.18460 8.57137 9.04610 9.62997 11.13369 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.017872 B = 0.002296 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.329376 B =12190.119079 C =12868.735455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.183 3.817 3 H 0.097 0.903 4 N -0.726 5.726 5 C 0.487 3.513 6 O -0.550 6.550 7 C 0.075 3.925 8 H 0.098 0.902 9 N -0.810 5.810 10 C -0.087 4.087 11 C -0.005 4.005 12 C -0.521 4.521 13 H 0.069 0.931 14 C 0.065 3.935 15 N -0.906 5.906 16 Si 0.879 3.121 17 H -0.279 1.279 18 H -0.290 1.290 19 H -0.260 1.260 20 C -0.067 4.067 21 C -0.100 4.100 22 C -0.054 4.054 23 C 0.075 3.925 24 N -0.462 5.462 25 C 0.064 3.936 26 S 0.096 5.904 27 C -0.175 4.175 28 C -0.062 4.062 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.403 0.597 33 H 0.350 0.650 34 H 0.335 0.665 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.008 0.992 38 H 0.034 0.966 39 H 0.262 0.738 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.204 0.796 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.183 9.469 27.672 30.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.078 3.922 3 H 0.115 0.885 4 N -0.379 5.379 5 C 0.273 3.727 6 O -0.427 6.427 7 C -0.041 4.041 8 H 0.116 0.884 9 N -0.339 5.339 10 C -0.125 4.125 11 C -0.042 4.042 12 C -0.559 4.559 13 H 0.087 0.913 14 C -0.135 4.135 15 N -0.545 5.545 16 Si 0.707 3.293 17 H -0.205 1.205 18 H -0.216 1.216 19 H -0.184 1.184 20 C -0.071 4.071 21 C -0.121 4.121 22 C -0.075 4.075 23 C -0.045 4.045 24 N -0.175 5.175 25 C -0.241 4.241 26 S 0.350 5.650 27 C -0.294 4.294 28 C -0.085 4.085 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.238 0.762 33 H 0.164 0.836 34 H 0.147 0.853 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.026 0.974 38 H 0.052 0.948 39 H 0.072 0.928 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.221 0.779 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.335 9.948 27.640 30.277 hybrid contribution 0.435 -0.546 -0.069 0.701 sum 7.769 9.402 27.571 30.148 Atomic orbital electron populations 1.22179 0.93645 1.03002 1.02939 1.19749 0.94608 0.96607 0.81275 0.88518 1.46315 1.67991 1.14317 1.09313 1.22658 0.76624 0.87878 0.85514 1.90655 1.50461 1.16479 1.85124 1.21879 1.00013 0.94939 0.87280 0.88418 1.59027 1.11942 1.22093 1.40789 1.21466 0.94467 0.97494 0.99084 1.19489 0.96497 0.94689 0.93530 1.21172 0.95748 1.24957 1.14036 0.91314 1.25019 0.96912 0.95180 0.96430 1.69924 1.31716 1.29096 1.23802 0.86775 0.85428 0.79141 0.78003 1.20522 1.21627 1.18404 1.19945 0.98140 0.93901 0.95111 1.20604 0.99298 0.93700 0.98458 1.20405 0.96722 1.00432 0.89934 1.19270 1.02411 0.89606 0.93235 1.66224 1.13076 1.37155 1.01007 1.28124 1.01234 0.91725 1.03016 1.84058 1.63053 1.10890 1.07009 1.23786 1.08549 0.97214 0.99870 1.20119 0.98176 0.99848 0.90354 0.91110 0.91783 0.91601 0.76161 0.83576 0.85315 0.92166 0.92196 0.97360 0.94779 0.92844 0.84288 0.84270 0.77914 0.84821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.46 37.16 0.35 -1.20 16 2 C 0.18 1.80 2.77 -69.08 -0.19 1.61 16 3 H 0.10 1.04 7.43 -51.93 -0.39 0.66 16 4 N -0.73 -7.93 5.03 -54.93 -0.28 -8.21 16 5 C 0.49 6.82 7.03 -10.99 -0.08 6.74 16 6 O -0.55 -9.12 15.91 5.55 0.09 -9.04 16 7 C 0.07 1.12 3.15 -68.86 -0.22 0.90 16 8 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 9 N -0.81 -12.28 8.44 -5.65 -0.05 -12.32 16 10 C -0.09 -1.61 4.78 -26.74 -0.13 -1.73 16 11 C 0.00 -0.11 3.93 -27.88 -0.11 -0.22 16 12 C -0.52 -14.64 9.66 -34.44 -0.33 -14.98 16 13 H 0.07 2.08 7.99 -52.49 -0.42 1.66 16 14 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 15 N -0.91 -27.97 13.96 55.43 0.77 -27.20 16 16 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 19 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 20 C -0.07 -0.59 4.95 -104.63 -0.52 -1.11 16 21 C -0.10 -0.84 8.96 -40.12 -0.36 -1.20 16 22 C -0.05 -0.50 10.05 -39.28 -0.39 -0.89 16 23 C 0.07 0.77 7.00 -84.96 -0.59 0.18 16 24 N -0.46 -4.70 10.57 -12.96 -0.14 -4.84 16 25 C 0.06 0.45 12.10 51.14 0.62 1.07 16 26 S 0.10 0.67 23.17 -107.50 -2.49 -1.82 16 27 C -0.18 -1.64 6.56 -38.54 -0.25 -1.90 16 28 C -0.06 -0.54 9.69 -39.39 -0.38 -0.92 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.40 3.72 6.88 -40.82 -0.28 3.44 16 33 H 0.35 5.43 8.58 -39.30 -0.34 5.09 16 34 H 0.34 4.36 9.06 -39.29 -0.36 4.00 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 38 H 0.03 0.82 6.81 -51.93 -0.35 0.47 16 39 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.14 0.96 6.92 -52.49 -0.36 0.60 16 41 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 42 H 0.20 0.64 8.06 -52.49 -0.42 0.22 16 43 H 0.13 0.95 8.03 -52.48 -0.42 0.53 16 LS Contribution 373.39 15.07 5.63 5.63 Total: -1.00 -34.50 373.39 -9.67 -44.17 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -5.86 Total: 8.36 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -2.68 Total: -11.84 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: 0.31 Total: -52.56 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.09 Total: -9.04 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Atomic # 16 Polarization: 0.67 SS G_CDS: -2.49 Total: -1.82 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.50 -9.67 -44.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576180725.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.075 kcal (2) G-P(sol) polarization free energy of solvation -34.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds