Wall clock time and date at job start Tue Mar 31 2020 18:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.47095 * 2 1 4 4 N 1.46496 * 109.47353 * 240.00213 * 2 1 3 5 5 C 1.34772 * 120.00222 * 84.99928 * 4 2 1 6 6 O 1.21283 * 119.99912 * 359.97438 * 5 4 2 7 7 C 1.50700 * 119.99971 * 180.02562 * 5 4 2 8 8 H 1.09001 * 109.46817 * 319.98961 * 7 5 4 9 9 N 1.46910 * 109.46728 * 199.99907 * 7 5 4 10 10 C 1.52992 * 109.47798 * 79.99728 * 7 5 4 11 11 C 1.52997 * 109.47482 * 185.00026 * 10 7 5 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 7 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99594 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99875 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47061 * 90.00257 * 16 14 12 18 18 H 1.48497 * 109.46906 * 209.99430 * 16 14 12 19 19 H 1.48498 * 109.47403 * 329.99876 * 16 14 12 20 20 C 1.50699 * 109.47121 * 119.99905 * 2 1 3 21 21 C 1.38788 * 119.96330 * 79.72401 * 20 2 1 22 22 C 1.36189 * 120.77605 * 179.73736 * 21 20 2 23 23 C 1.40972 * 120.42177 * 0.55999 * 22 21 20 24 24 N 1.34661 * 129.68639 * 179.72086 * 23 22 21 25 25 C 1.27930 * 117.84855 * 179.97438 * 24 23 22 26 26 S 1.70649 * 111.51869 * 0.02562 * 25 24 23 27 27 C 1.39915 * 118.50952 * 359.70574 * 23 22 21 28 28 C 1.37654 * 119.96802 * 260.00216 * 20 2 1 29 29 H 1.09001 * 109.46762 * 59.99885 * 1 2 3 30 30 H 1.08991 * 109.46831 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47194 * 299.99974 * 1 2 3 32 32 H 0.97003 * 119.99378 * 265.00072 * 4 2 1 33 33 H 1.00892 * 110.99957 * 299.99600 * 9 7 5 34 34 H 1.00899 * 110.99816 * 63.94833 * 9 7 5 35 35 H 1.09002 * 109.47103 * 64.99779 * 10 7 5 36 36 H 1.08998 * 109.46862 * 305.00591 * 10 7 5 37 37 H 1.09002 * 109.47153 * 59.99783 * 11 10 7 38 38 H 1.09001 * 109.46832 * 299.99974 * 11 10 7 39 39 H 0.97002 * 119.99739 * 180.02562 * 15 14 12 40 40 H 1.07993 * 119.61371 * 0.02562 * 21 20 2 41 41 H 1.07995 * 119.78465 * 180.24267 * 22 21 20 42 42 H 1.07998 * 124.23804 * 179.97438 * 25 24 23 43 43 H 1.08010 * 120.02328 * 359.95503 * 28 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1961 5 6 2.1472 -0.0182 -2.3571 6 8 1.8583 1.1584 -2.4117 7 6 2.6490 -0.7288 -3.5877 8 1 3.4552 -1.4084 -3.3114 9 7 3.1504 0.2587 -4.5530 10 6 1.5052 -1.5244 -4.2195 11 6 2.0420 -2.3437 -5.3948 12 6 0.9153 -3.1279 -6.0167 13 1 -0.0838 -3.0493 -5.6143 14 6 1.1599 -3.9448 -7.1002 15 7 0.1765 -4.6286 -7.6432 16 14 2.8879 -4.0800 -7.7967 17 1 3.6109 -5.1842 -7.1160 18 1 2.8139 -4.3607 -9.2530 19 1 3.6125 -2.8030 -7.5747 20 6 2.0324 -0.7104 1.2305 21 6 2.0612 -2.0975 1.2668 22 6 2.5169 -2.7564 2.3682 23 6 2.9575 -2.0381 3.4983 24 7 3.4335 -2.4915 4.6736 25 6 3.7728 -1.6277 5.5541 26 16 3.5261 -0.0342 4.9955 27 6 2.9207 -0.6400 3.4571 28 6 2.4568 0.0171 2.3193 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 2.2491 -1.6317 -1.1525 33 1 2.4213 0.9009 -4.8249 34 1 3.9483 0.7532 -4.1830 35 1 0.7381 -0.8369 -4.5761 36 1 1.0747 -2.1948 -3.4757 37 1 2.8091 -3.0311 -5.0381 38 1 2.4724 -1.6732 -6.1386 39 1 0.3486 -5.2036 -8.4053 40 1 1.7227 -2.6609 0.4100 41 1 2.5359 -3.8361 2.3777 42 1 4.1654 -1.8759 6.5291 43 1 2.4305 1.0965 2.2916 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576180725.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:27 Heat of formation + Delta-G solvation = -15.132208 kcal Electronic energy + Delta-G solvation = -25183.730905 eV Core-core repulsion = 21546.685338 eV Total energy + Delta-G solvation = -3637.045566 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.71443 -40.98023 -38.76235 -36.86951 -35.99521 -34.76249 -32.67083 -32.26029 -31.92839 -29.90185 -28.37184 -26.33413 -25.50635 -24.23954 -23.54854 -22.23224 -21.62607 -21.13084 -19.56414 -18.99154 -18.34082 -17.83398 -17.13307 -16.96655 -16.57251 -16.31576 -16.01296 -15.87713 -15.66312 -15.17119 -14.98388 -14.86722 -14.73460 -14.61894 -14.33072 -14.00825 -13.66490 -13.54998 -13.43689 -13.06618 -12.78525 -12.61623 -12.51653 -12.24023 -11.97392 -11.86850 -11.72393 -11.57422 -11.27622 -11.21207 -11.09439 -10.71829 -10.68992 -10.24780 -9.77452 -9.60318 -9.14559 -8.23108 -6.25909 -0.68429 0.05521 0.23361 0.68409 1.23056 1.41144 1.44836 1.52475 1.58645 2.14715 2.43193 2.57513 3.01281 3.13709 3.37634 3.56749 3.58391 3.83636 4.00467 4.03747 4.10992 4.18145 4.26418 4.30465 4.32613 4.50697 4.64947 4.74364 4.75315 4.83300 4.89542 5.00962 5.07854 5.17387 5.20671 5.23560 5.47327 5.53717 5.58295 5.68392 5.76614 6.09563 6.34794 6.43963 6.52637 6.54807 6.83073 7.14043 7.38607 8.93670 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.017872 B = 0.002296 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.329376 B =12190.119079 C =12868.735455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.188 3.812 3 H 0.090 0.910 4 N -0.713 5.713 5 C 0.492 3.508 6 O -0.577 6.577 7 C 0.083 3.917 8 H 0.120 0.880 9 N -0.819 5.819 10 C -0.078 4.078 11 C 0.001 3.999 12 C -0.529 4.529 13 H 0.029 0.971 14 C 0.001 3.999 15 N -0.955 5.955 16 Si 0.951 3.049 17 H -0.265 1.265 18 H -0.291 1.291 19 H -0.244 1.244 20 C -0.071 4.071 21 C -0.097 4.097 22 C -0.067 4.067 23 C 0.057 3.943 24 N -0.499 5.499 25 C 0.070 3.930 26 S 0.131 5.869 27 C -0.199 4.199 28 C -0.062 4.062 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.413 0.587 33 H 0.346 0.654 34 H 0.348 0.652 35 H 0.040 0.960 36 H 0.068 0.932 37 H 0.022 0.978 38 H 0.028 0.972 39 H 0.264 0.736 40 H 0.152 0.848 41 H 0.146 0.854 42 H 0.240 0.760 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.428 9.915 29.449 32.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.084 3.916 3 H 0.108 0.892 4 N -0.366 5.366 5 C 0.277 3.723 6 O -0.457 6.457 7 C -0.033 4.033 8 H 0.137 0.863 9 N -0.348 5.348 10 C -0.117 4.117 11 C -0.036 4.036 12 C -0.567 4.567 13 H 0.048 0.952 14 C -0.195 4.195 15 N -0.597 5.597 16 Si 0.775 3.225 17 H -0.190 1.190 18 H -0.217 1.217 19 H -0.168 1.168 20 C -0.075 4.075 21 C -0.118 4.118 22 C -0.088 4.088 23 C -0.063 4.063 24 N -0.212 5.212 25 C -0.234 4.234 26 S 0.385 5.615 27 C -0.318 4.318 28 C -0.085 4.085 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.250 0.750 33 H 0.160 0.840 34 H 0.162 0.838 35 H 0.059 0.941 36 H 0.087 0.913 37 H 0.040 0.960 38 H 0.047 0.953 39 H 0.073 0.927 40 H 0.170 0.830 41 H 0.164 0.836 42 H 0.256 0.744 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 9.594 10.393 29.464 32.683 hybrid contribution -0.337 -0.659 -0.484 0.885 sum 9.257 9.734 28.980 31.942 Atomic orbital electron populations 1.22143 0.93566 1.03142 1.02591 1.19712 0.94570 0.96252 0.81110 0.89221 1.46218 1.66745 1.14733 1.08907 1.22349 0.76484 0.87424 0.85996 1.90651 1.51756 1.17658 1.85614 1.21691 0.99131 0.95011 0.87432 0.86264 1.59017 1.12388 1.22304 1.41136 1.21254 0.95282 0.97188 0.97970 1.19380 0.94926 0.94599 0.94709 1.21569 0.95734 1.25273 1.14095 0.95249 1.26012 1.01585 0.94895 0.96991 1.70084 1.34398 1.30438 1.24742 0.85641 0.79848 0.80070 0.76988 1.18985 1.21713 1.16759 1.19798 0.98986 0.94020 0.94721 1.20726 0.98761 0.93608 0.98673 1.20571 0.97217 1.00952 0.90086 1.19578 1.02655 0.90309 0.93752 1.66276 1.14962 1.38364 1.01627 1.28800 0.99280 0.91617 1.03654 1.83921 1.62049 1.10249 1.05263 1.24040 1.09262 0.97326 1.01201 1.20295 0.97506 1.00564 0.90132 0.93343 0.91391 0.90040 0.74970 0.84029 0.83820 0.94094 0.91332 0.95958 0.95346 0.92734 0.83001 0.83587 0.74448 0.83517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.46 71.98 0.68 -2.22 16 2 C 0.19 3.47 2.77 44.25 0.12 3.59 16 3 H 0.09 1.83 7.43 -2.38 -0.02 1.81 16 4 N -0.71 -14.44 5.03 -446.09 -2.24 -16.68 16 5 C 0.49 13.09 7.03 87.66 0.62 13.71 16 6 O -0.58 -18.70 15.91 -3.04 -0.05 -18.75 16 7 C 0.08 2.33 3.15 44.16 0.14 2.47 16 8 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 9 N -0.82 -23.48 8.44 -171.79 -1.45 -24.93 16 10 C -0.08 -2.85 4.78 30.59 0.15 -2.70 16 11 C 0.00 0.06 3.93 29.85 0.12 0.18 16 12 C -0.53 -30.12 9.66 25.60 0.25 -29.88 16 13 H 0.03 1.84 7.99 -2.91 -0.02 1.82 16 14 C 0.00 0.07 5.47 84.66 0.46 0.54 16 15 N -0.96 -60.27 13.96 21.45 0.30 -59.97 16 16 Si 0.95 44.44 27.47 68.60 1.88 46.32 16 17 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 18 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 19 H -0.24 -10.72 6.54 99.48 0.65 -10.07 16 20 C -0.07 -1.15 4.95 -19.87 -0.10 -1.25 16 21 C -0.10 -1.50 8.96 21.92 0.20 -1.30 16 22 C -0.07 -1.18 10.05 22.46 0.23 -0.95 16 23 C 0.06 1.13 7.00 39.79 0.28 1.40 16 24 N -0.50 -9.53 10.57 -194.76 -2.06 -11.59 16 25 C 0.07 0.85 12.10 130.81 1.58 2.43 16 26 S 0.13 1.55 23.17 -56.49 -1.31 0.24 16 27 C -0.20 -3.46 6.56 22.94 0.15 -3.31 16 28 C -0.06 -1.00 9.69 22.40 0.22 -0.78 16 29 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.41 6.73 6.88 -92.71 -0.64 6.10 16 33 H 0.35 10.47 8.58 -89.70 -0.77 9.70 16 34 H 0.35 8.37 9.06 -89.69 -0.81 7.55 16 35 H 0.04 1.62 8.14 -2.39 -0.02 1.61 16 36 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.02 0.94 7.57 -2.39 -0.02 0.93 16 38 H 0.03 1.31 6.81 -2.39 -0.02 1.30 16 39 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 40 H 0.15 1.83 6.92 -2.91 -0.02 1.81 16 41 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 42 H 0.24 0.78 8.06 -2.91 -0.02 0.75 16 43 H 0.15 1.85 8.03 -2.91 -0.02 1.82 16 Total: -1.00 -75.46 373.39 -1.05 -76.51 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: -1.21 Total: 26.93 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: 5.09 Total: -18.08 kcal Atomic # 7 Polarization: -107.72 SS G_CDS: -5.45 Total: -113.17 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.05 Total: -18.75 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.88 Total: 46.32 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -1.31 Total: 0.24 kcal Total: -75.46 -1.05 -76.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576180725.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.374 kcal (2) G-P(sol) polarization free energy of solvation -75.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds