Wall clock time and date at job start Tue Mar 31 2020 18:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47464 * 2 1 4 4 N 1.46497 * 109.47379 * 120.00274 * 2 1 3 5 5 C 1.34780 * 120.00113 * 275.00106 * 4 2 1 6 6 O 1.21289 * 119.99821 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00232 * 179.97438 * 5 4 2 8 8 H 1.09001 * 109.46613 * 40.00277 * 7 5 4 9 9 N 1.46906 * 109.46982 * 160.00064 * 7 5 4 10 10 C 1.52997 * 109.47466 * 280.00174 * 7 5 4 11 11 C 1.53000 * 109.47341 * 175.00164 * 10 7 5 12 12 C 1.50690 * 109.47247 * 180.02562 * 11 10 7 13 13 H 1.08003 * 120.00245 * 359.97438 * 12 11 10 14 14 C 1.37884 * 120.00333 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99643 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00220 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46792 * 60.00197 * 16 14 12 18 18 H 1.48499 * 109.46947 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47059 * 300.00552 * 16 14 12 20 20 C 1.50698 * 109.47450 * 240.00249 * 2 1 3 21 21 C 1.38795 * 119.96607 * 280.00594 * 20 2 1 22 22 C 1.36179 * 120.77737 * 179.97438 * 21 20 2 23 23 C 1.40965 * 120.42785 * 359.97237 * 22 21 20 24 24 N 1.34665 * 129.69196 * 179.97438 * 23 22 21 25 25 C 1.27929 * 117.84629 * 180.02562 * 24 23 22 26 26 S 1.70643 * 111.52582 * 0.02562 * 25 24 23 27 27 C 1.39921 * 118.50564 * 0.02648 * 23 22 21 28 28 C 1.37653 * 119.96722 * 99.71859 * 20 2 1 29 29 H 1.08992 * 109.47395 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47107 * 300.00274 * 1 2 3 31 31 H 1.09001 * 109.46949 * 59.99298 * 1 2 3 32 32 H 0.97001 * 120.00420 * 94.99432 * 4 2 1 33 33 H 1.00896 * 111.00309 * 60.00059 * 9 7 5 34 34 H 1.00902 * 110.99923 * 183.96223 * 9 7 5 35 35 H 1.09002 * 109.47196 * 294.99972 * 10 7 5 36 36 H 1.09004 * 109.46881 * 54.99487 * 10 7 5 37 37 H 1.09002 * 109.46818 * 300.00038 * 11 10 7 38 38 H 1.08994 * 109.47281 * 59.99487 * 11 10 7 39 39 H 0.96996 * 119.99918 * 179.97438 * 15 14 12 40 40 H 1.07997 * 119.60645 * 359.97438 * 21 20 2 41 41 H 1.08004 * 119.78272 * 180.02562 * 22 21 20 42 42 H 1.08003 * 124.23706 * 180.02562 * 25 24 23 43 43 H 1.08005 * 120.02437 * 0.03246 * 28 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8590 1.1586 2.4115 7 6 2.6489 -0.7289 3.5877 8 1 3.4550 -1.4086 3.3113 9 7 3.1502 0.2585 4.5530 10 6 1.5049 -1.5245 4.2194 11 6 2.0417 -2.3439 5.3948 12 6 0.9151 -3.1280 6.0166 13 1 -0.0840 -3.0495 5.6141 14 6 1.1597 -3.9458 7.0995 15 7 2.3763 -4.0410 7.5899 16 14 -0.2370 -4.9172 7.8708 17 1 -0.8237 -5.8302 6.8571 18 1 0.2841 -5.7126 9.0114 19 1 -1.2818 -3.9807 8.3571 20 6 2.0324 -0.7103 -1.2305 21 6 2.0665 -2.0974 -1.2648 22 6 2.5168 -2.7563 -2.3683 23 6 2.9569 -2.0380 -3.4985 24 7 3.4333 -2.4913 -4.6738 25 6 3.7720 -1.6275 -5.5544 26 16 3.5254 -0.0340 -4.9957 27 6 2.9199 -0.6399 -3.4574 28 6 2.4514 0.0171 -2.3214 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 2.2490 -1.6318 1.1526 33 1 2.4212 0.9007 4.8250 34 1 3.5515 -0.1959 5.3597 35 1 0.7379 -0.8371 4.5761 36 1 1.0745 -2.1949 3.4755 37 1 2.8088 -3.0313 5.0381 38 1 2.4722 -1.6735 6.1385 39 1 2.5484 -4.6160 8.3519 40 1 1.7320 -2.6608 -0.4063 41 1 2.5361 -3.8361 -2.3777 42 1 4.1648 -1.8756 -6.5294 43 1 2.4206 1.0964 -2.2955 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576180727.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:35 Heat of formation + Delta-G solvation = 6.011421 kcal Electronic energy + Delta-G solvation = -25132.077374 eV Core-core repulsion = 21495.948664 eV Total energy + Delta-G solvation = -3636.128710 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.93114 -39.78236 -37.88787 -35.63793 -34.90067 -32.87084 -31.84324 -31.08783 -29.90196 -29.14025 -26.57673 -25.57495 -24.25758 -23.45352 -22.73266 -21.14545 -20.54847 -19.82668 -18.84197 -17.55822 -16.96691 -16.35291 -16.16587 -16.04226 -15.18073 -15.12254 -14.78195 -14.49761 -14.39804 -14.24311 -14.10893 -13.92590 -13.56459 -13.19198 -13.11648 -12.87780 -12.64322 -12.25640 -12.13582 -11.83032 -11.69720 -11.43039 -11.14599 -11.10197 -10.92811 -10.72418 -10.53974 -10.07076 -10.00999 -9.94227 -9.33307 -9.25521 -9.14469 -8.98780 -8.48211 -8.45446 -8.20538 -6.10087 -4.13383 -0.01059 0.76296 0.85318 1.31777 1.91673 2.88953 3.13190 3.27149 3.32311 3.34024 3.34888 3.60226 4.15226 4.27799 4.37837 4.64648 4.78088 4.82675 4.94110 5.05042 5.13382 5.19918 5.22781 5.26057 5.42374 5.50157 5.56226 5.69396 5.73212 5.74058 5.79006 6.01794 6.07346 6.25644 6.27009 6.47304 6.51164 6.85024 7.17034 7.39605 7.49559 7.58736 7.65756 7.86616 7.89130 8.29084 8.41416 8.92386 9.51541 11.00746 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.017516 B = 0.002236 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.109330 B =12521.363704 C =13311.184986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.186 3.814 3 H 0.099 0.901 4 N -0.730 5.730 5 C 0.529 3.471 6 O -0.536 6.536 7 C 0.074 3.926 8 H 0.096 0.904 9 N -0.831 5.831 10 C -0.137 4.137 11 C 0.024 3.976 12 C -0.525 4.525 13 H 0.054 0.946 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.065 4.065 21 C -0.099 4.099 22 C -0.055 4.055 23 C 0.074 3.926 24 N -0.463 5.463 25 C 0.063 3.937 26 S 0.096 5.904 27 C -0.175 4.175 28 C -0.062 4.062 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.401 0.599 33 H 0.345 0.655 34 H 0.355 0.645 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.262 0.738 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.204 0.796 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.624 6.678 -25.796 26.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.081 3.919 3 H 0.116 0.884 4 N -0.385 5.385 5 C 0.316 3.684 6 O -0.412 6.412 7 C -0.041 4.041 8 H 0.114 0.886 9 N -0.363 5.363 10 C -0.177 4.177 11 C -0.013 4.013 12 C -0.563 4.563 13 H 0.072 0.928 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.069 4.069 21 C -0.120 4.120 22 C -0.076 4.076 23 C -0.046 4.046 24 N -0.175 5.175 25 C -0.242 4.242 26 S 0.350 5.650 27 C -0.294 4.294 28 C -0.085 4.085 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.237 0.763 33 H 0.159 0.841 34 H 0.170 0.830 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.037 0.963 38 H 0.036 0.964 39 H 0.072 0.928 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.220 0.780 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.292 8.056 -26.838 28.115 hybrid contribution -1.542 -2.137 1.599 3.083 sum 0.750 5.918 -25.239 25.935 Atomic orbital electron populations 1.22185 0.93829 1.02841 1.02909 1.19706 0.94407 0.96724 0.81112 0.88353 1.46148 1.68876 1.14231 1.09216 1.20910 0.76249 0.87050 0.84181 1.90635 1.49527 1.16083 1.84913 1.21480 0.98529 0.93250 0.90811 0.88577 1.58739 1.38314 1.19866 1.19365 1.22380 0.96396 0.98715 1.00171 1.19095 0.96569 0.94251 0.91353 1.21134 0.94933 1.25962 1.14252 0.92777 1.25016 0.95595 0.96825 0.96872 1.69936 1.19677 1.38914 1.24640 0.86644 0.82364 0.80084 0.78844 1.20216 1.21218 1.20225 1.19957 0.98039 0.93879 0.95073 1.20599 0.99326 0.93735 0.98356 1.20389 0.96861 1.00377 0.89935 1.19263 1.02469 0.89620 0.93240 1.66222 1.13075 1.37168 1.01013 1.28109 1.01328 0.91759 1.02997 1.84049 1.63104 1.10859 1.07034 1.23785 1.08496 0.97193 0.99887 1.20127 0.98094 0.99900 0.90342 0.91927 0.91122 0.91626 0.76340 0.84130 0.83011 0.92649 0.92533 0.96337 0.96404 0.92805 0.84334 0.84338 0.77957 0.84749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.46 37.16 0.35 -1.25 16 2 C 0.19 1.96 2.77 -69.09 -0.19 1.77 16 3 H 0.10 1.15 7.43 -51.93 -0.39 0.76 16 4 N -0.73 -8.77 5.03 -54.93 -0.28 -9.05 16 5 C 0.53 8.26 7.04 -10.99 -0.08 8.18 16 6 O -0.54 -9.88 15.91 5.55 0.09 -9.79 16 7 C 0.07 1.22 3.21 -68.86 -0.22 1.00 16 8 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 9 N -0.83 -14.00 8.94 -5.65 -0.05 -14.05 16 10 C -0.14 -2.58 4.78 -26.73 -0.13 -2.71 16 11 C 0.02 0.58 4.74 -27.89 -0.13 0.45 16 12 C -0.52 -14.15 9.11 -34.44 -0.31 -14.47 16 13 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16 16 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 C -0.07 -0.62 4.95 -104.63 -0.52 -1.13 16 21 C -0.10 -0.88 8.96 -40.12 -0.36 -1.24 16 22 C -0.05 -0.53 10.05 -39.29 -0.39 -0.92 16 23 C 0.07 0.80 7.00 -84.96 -0.59 0.20 16 24 N -0.46 -4.87 10.57 -12.96 -0.14 -5.01 16 25 C 0.06 0.47 12.10 51.14 0.62 1.09 16 26 S 0.10 0.71 23.17 -107.50 -2.49 -1.78 16 27 C -0.17 -1.72 6.56 -38.54 -0.25 -1.97 16 28 C -0.06 -0.57 9.69 -39.39 -0.38 -0.95 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.40 4.10 6.86 -40.82 -0.28 3.82 16 33 H 0.35 5.89 8.58 -39.29 -0.34 5.55 16 34 H 0.35 6.02 7.55 -39.29 -0.30 5.72 16 35 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 39 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.14 1.02 6.90 -52.49 -0.36 0.66 16 41 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 42 H 0.20 0.71 8.06 -52.48 -0.42 0.28 16 43 H 0.13 1.03 8.03 -52.48 -0.42 0.61 16 LS Contribution 375.02 15.07 5.65 5.65 Total: -1.00 -32.68 375.02 -9.98 -42.65 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -5.79 Total: 10.82 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -2.69 Total: -10.44 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 0.27 Total: -53.16 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 0.71 SS G_CDS: -2.49 Total: -1.78 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.68 -9.98 -42.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576180727.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.664 kcal (2) G-P(sol) polarization free energy of solvation -32.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds