Wall clock time and date at job start Tue Mar 31 2020 18:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47464 * 2 1 4 4 N 1.46497 * 109.47379 * 120.00274 * 2 1 3 5 5 C 1.34780 * 120.00113 * 275.00106 * 4 2 1 6 6 O 1.21289 * 119.99821 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00232 * 179.97438 * 5 4 2 8 8 H 1.09001 * 109.46613 * 40.00277 * 7 5 4 9 9 N 1.46906 * 109.46982 * 160.00064 * 7 5 4 10 10 C 1.52997 * 109.47466 * 280.00174 * 7 5 4 11 11 C 1.53000 * 109.47341 * 175.00164 * 10 7 5 12 12 C 1.50690 * 109.47247 * 180.02562 * 11 10 7 13 13 H 1.08003 * 120.00245 * 359.97438 * 12 11 10 14 14 C 1.37884 * 120.00333 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99643 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00220 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46792 * 60.00197 * 16 14 12 18 18 H 1.48499 * 109.46947 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47059 * 300.00552 * 16 14 12 20 20 C 1.50698 * 109.47450 * 240.00249 * 2 1 3 21 21 C 1.38795 * 119.96607 * 280.00594 * 20 2 1 22 22 C 1.36179 * 120.77737 * 179.97438 * 21 20 2 23 23 C 1.40965 * 120.42785 * 359.97237 * 22 21 20 24 24 N 1.34665 * 129.69196 * 179.97438 * 23 22 21 25 25 C 1.27929 * 117.84629 * 180.02562 * 24 23 22 26 26 S 1.70643 * 111.52582 * 0.02562 * 25 24 23 27 27 C 1.39921 * 118.50564 * 0.02648 * 23 22 21 28 28 C 1.37653 * 119.96722 * 99.71859 * 20 2 1 29 29 H 1.08992 * 109.47395 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47107 * 300.00274 * 1 2 3 31 31 H 1.09001 * 109.46949 * 59.99298 * 1 2 3 32 32 H 0.97001 * 120.00420 * 94.99432 * 4 2 1 33 33 H 1.00896 * 111.00309 * 60.00059 * 9 7 5 34 34 H 1.00902 * 110.99923 * 183.96223 * 9 7 5 35 35 H 1.09002 * 109.47196 * 294.99972 * 10 7 5 36 36 H 1.09004 * 109.46881 * 54.99487 * 10 7 5 37 37 H 1.09002 * 109.46818 * 300.00038 * 11 10 7 38 38 H 1.08994 * 109.47281 * 59.99487 * 11 10 7 39 39 H 0.96996 * 119.99918 * 179.97438 * 15 14 12 40 40 H 1.07997 * 119.60645 * 359.97438 * 21 20 2 41 41 H 1.08004 * 119.78272 * 180.02562 * 22 21 20 42 42 H 1.08003 * 124.23706 * 180.02562 * 25 24 23 43 43 H 1.08005 * 120.02437 * 0.03246 * 28 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8590 1.1586 2.4115 7 6 2.6489 -0.7289 3.5877 8 1 3.4550 -1.4086 3.3113 9 7 3.1502 0.2585 4.5530 10 6 1.5049 -1.5245 4.2194 11 6 2.0417 -2.3439 5.3948 12 6 0.9151 -3.1280 6.0166 13 1 -0.0840 -3.0495 5.6141 14 6 1.1597 -3.9458 7.0995 15 7 2.3763 -4.0410 7.5899 16 14 -0.2370 -4.9172 7.8708 17 1 -0.8237 -5.8302 6.8571 18 1 0.2841 -5.7126 9.0114 19 1 -1.2818 -3.9807 8.3571 20 6 2.0324 -0.7103 -1.2305 21 6 2.0665 -2.0974 -1.2648 22 6 2.5168 -2.7563 -2.3683 23 6 2.9569 -2.0380 -3.4985 24 7 3.4333 -2.4913 -4.6738 25 6 3.7720 -1.6275 -5.5544 26 16 3.5254 -0.0340 -4.9957 27 6 2.9199 -0.6399 -3.4574 28 6 2.4514 0.0171 -2.3214 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 2.2490 -1.6318 1.1526 33 1 2.4212 0.9007 4.8250 34 1 3.5515 -0.1959 5.3597 35 1 0.7379 -0.8371 4.5761 36 1 1.0745 -2.1949 3.4755 37 1 2.8088 -3.0313 5.0381 38 1 2.4722 -1.6735 6.1385 39 1 2.5484 -4.6160 8.3519 40 1 1.7320 -2.6608 -0.4063 41 1 2.5361 -3.8361 -2.3777 42 1 4.1648 -1.8756 -6.5294 43 1 2.4206 1.0964 -2.2955 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576180727.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:34 Heat of formation + Delta-G solvation = -16.390711 kcal Electronic energy + Delta-G solvation = -25133.048803 eV Core-core repulsion = 21495.948664 eV Total energy + Delta-G solvation = -3637.100139 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.67851 -40.89497 -38.72679 -37.07359 -35.93573 -34.81895 -32.65409 -31.91073 -31.66142 -29.88096 -28.14284 -26.32429 -25.76491 -24.30514 -23.59044 -22.45284 -21.62898 -21.07328 -19.53361 -18.94052 -18.15225 -17.76596 -16.96936 -16.89032 -16.57338 -16.15057 -15.99450 -15.80277 -15.62285 -15.20925 -14.93441 -14.83251 -14.67040 -14.56036 -14.32122 -13.98764 -13.59987 -13.52557 -13.40985 -13.02015 -12.90973 -12.64692 -12.59083 -12.52446 -12.20468 -11.85193 -11.77649 -11.68928 -11.30021 -11.19429 -10.73979 -10.70373 -10.54257 -10.19920 -9.71942 -9.61087 -9.12724 -8.20081 -6.30181 -0.66531 0.07497 0.25013 0.70121 1.24742 1.40881 1.42184 1.50080 1.63232 2.11194 2.40978 2.59148 3.02830 3.13671 3.40091 3.59193 3.77661 3.79306 4.04012 4.05946 4.15426 4.20058 4.26995 4.30469 4.35366 4.53234 4.68401 4.69752 4.77412 4.85025 4.91619 5.03059 5.09747 5.11608 5.23715 5.26686 5.48598 5.51699 5.60337 5.68064 5.82580 6.09104 6.22849 6.49409 6.51364 6.54243 6.85574 7.23060 7.38813 8.90426 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.017516 B = 0.002236 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.109330 B =12521.363704 C =13311.184986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.190 3.810 3 H 0.089 0.911 4 N -0.716 5.716 5 C 0.532 3.468 6 O -0.566 6.566 7 C 0.079 3.921 8 H 0.108 0.892 9 N -0.831 5.831 10 C -0.120 4.120 11 C 0.030 3.970 12 C -0.543 4.543 13 H 0.056 0.944 14 C 0.005 3.995 15 N -0.927 5.927 16 Si 0.958 3.042 17 H -0.267 1.267 18 H -0.284 1.284 19 H -0.271 1.271 20 C -0.071 4.071 21 C -0.097 4.097 22 C -0.068 4.068 23 C 0.057 3.943 24 N -0.499 5.499 25 C 0.070 3.930 26 S 0.131 5.869 27 C -0.199 4.199 28 C -0.062 4.062 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.082 0.918 32 H 0.411 0.589 33 H 0.344 0.656 34 H 0.352 0.648 35 H 0.045 0.955 36 H 0.069 0.931 37 H 0.002 0.998 38 H 0.001 0.999 39 H 0.263 0.737 40 H 0.153 0.847 41 H 0.147 0.853 42 H 0.240 0.760 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.068 6.449 -27.566 28.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.085 3.915 3 H 0.107 0.893 4 N -0.369 5.369 5 C 0.319 3.681 6 O -0.444 6.444 7 C -0.036 4.036 8 H 0.126 0.874 9 N -0.362 5.362 10 C -0.160 4.160 11 C -0.008 4.008 12 C -0.581 4.581 13 H 0.074 0.926 14 C -0.194 4.194 15 N -0.567 5.567 16 Si 0.783 3.217 17 H -0.192 1.192 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.075 4.075 21 C -0.118 4.118 22 C -0.088 4.088 23 C -0.063 4.063 24 N -0.212 5.212 25 C -0.234 4.234 26 S 0.385 5.615 27 C -0.318 4.318 28 C -0.085 4.085 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.249 0.751 33 H 0.157 0.843 34 H 0.167 0.833 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.072 0.928 40 H 0.170 0.830 41 H 0.164 0.836 42 H 0.256 0.744 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.731 7.817 -28.648 29.746 hybrid contribution -1.311 -2.033 2.023 3.153 sum 0.421 5.783 -26.626 27.250 Atomic orbital electron populations 1.22141 0.93240 1.03235 1.02709 1.19710 0.94782 0.96188 0.80784 0.89320 1.46041 1.67530 1.14635 1.08723 1.20646 0.76127 0.86608 0.84745 1.90626 1.51023 1.17296 1.85471 1.21425 0.97864 0.93154 0.91138 0.87439 1.58757 1.38218 1.19867 1.19376 1.22124 0.96808 0.98281 0.98752 1.18967 0.95382 0.93878 0.92542 1.21597 0.95825 1.26197 1.14522 0.92597 1.25866 0.97984 0.97996 0.97541 1.70055 1.21615 1.39824 1.25207 0.85613 0.79338 0.78737 0.78046 1.19164 1.20993 1.19651 1.19807 0.98996 0.94057 0.94649 1.20725 0.98819 0.93592 0.98616 1.20562 0.97289 1.00943 0.90048 1.19577 1.02669 0.90299 0.93781 1.66276 1.14964 1.38349 1.01607 1.28798 0.99314 0.91615 1.03646 1.83916 1.62094 1.10257 1.05242 1.24039 1.09218 0.97338 1.01227 1.20298 0.97455 1.00596 0.90165 0.91218 0.93187 0.89932 0.75127 0.84285 0.83296 0.93630 0.91276 0.97994 0.98049 0.92786 0.82985 0.83552 0.74422 0.83502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.46 71.98 0.68 -2.24 16 2 C 0.19 3.80 2.77 44.24 0.12 3.92 16 3 H 0.09 2.00 7.43 -2.38 -0.02 1.98 16 4 N -0.72 -16.31 5.03 -446.10 -2.24 -18.55 16 5 C 0.53 16.21 7.04 87.66 0.62 16.83 16 6 O -0.57 -20.67 15.91 -3.06 -0.05 -20.72 16 7 C 0.08 2.56 3.21 44.17 0.14 2.70 16 8 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 9 N -0.83 -28.02 8.94 -171.80 -1.54 -29.56 16 10 C -0.12 -4.48 4.78 30.59 0.15 -4.33 16 11 C 0.03 1.41 4.74 29.84 0.14 1.56 16 12 C -0.54 -29.31 9.11 25.60 0.23 -29.08 16 13 H 0.06 2.92 7.74 -2.91 -0.02 2.90 16 14 C 0.00 0.25 5.46 84.66 0.46 0.72 16 15 N -0.93 -54.01 13.29 21.45 0.28 -53.73 16 16 Si 0.96 42.93 29.54 68.60 2.03 44.95 16 17 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 C -0.07 -1.25 4.95 -19.87 -0.10 -1.35 16 21 C -0.10 -1.60 8.96 21.92 0.20 -1.40 16 22 C -0.07 -1.24 10.05 22.46 0.23 -1.02 16 23 C 0.06 1.17 7.00 39.78 0.28 1.45 16 24 N -0.50 -9.90 10.57 -194.77 -2.06 -11.96 16 25 C 0.07 0.90 12.10 130.81 1.58 2.48 16 26 S 0.13 1.67 23.17 -56.49 -1.31 0.36 16 27 C -0.20 -3.68 6.56 22.94 0.15 -3.53 16 28 C -0.06 -1.08 9.69 22.40 0.22 -0.86 16 29 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.41 7.73 6.86 -92.71 -0.64 7.09 16 33 H 0.34 11.81 8.58 -89.70 -0.77 11.04 16 34 H 0.35 12.11 7.55 -89.69 -0.68 11.44 16 35 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 37 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 38 H 0.00 0.06 6.87 -2.39 -0.02 0.05 16 39 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 40 H 0.15 1.98 6.90 -2.91 -0.02 1.96 16 41 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 42 H 0.24 0.93 8.06 -2.91 -0.02 0.91 16 43 H 0.15 2.05 8.03 -2.91 -0.02 2.02 16 Total: -1.00 -69.84 375.02 -0.80 -70.64 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: -1.02 Total: 32.73 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: 5.10 Total: -14.16 kcal Atomic # 7 Polarization: -108.25 SS G_CDS: -5.55 Total: -113.80 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.05 Total: -20.72 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -1.31 Total: 0.36 kcal Total: -69.84 -0.80 -70.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576180727.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.246 kcal (2) G-P(sol) polarization free energy of solvation -69.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds