Wall clock time and date at job start Tue Mar 31 2020 18:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47644 * 2 1 4 4 C 1.50708 * 109.46742 * 240.00331 * 2 1 3 5 5 O 1.20830 * 119.99428 * 240.00231 * 4 2 1 6 6 O 1.34218 * 120.00241 * 60.00263 * 4 2 1 7 7 C 1.45201 * 117.00179 * 174.88742 * 6 4 2 8 8 C 1.50691 * 112.85150 * 65.14122 * 7 6 4 9 9 H 1.08001 * 120.00048 * 243.03105 * 8 7 6 10 10 C 1.37872 * 120.00283 * 63.03009 * 8 7 6 11 11 N 1.31513 * 120.00186 * 353.71489 * 10 8 7 12 12 Si 1.86800 * 120.00394 * 173.70710 * 10 8 7 13 13 H 1.48508 * 109.46893 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.47305 * 120.00024 * 12 10 8 15 15 H 1.48495 * 109.47713 * 240.00497 * 12 10 8 16 16 C 1.53788 * 113.61094 * 293.94251 * 7 6 4 17 17 C 1.53955 * 87.01784 * 220.04843 * 16 7 6 18 18 C 1.53784 * 87.11366 * 25.36517 * 17 16 7 19 19 N 1.46497 * 109.47176 * 120.00565 * 2 1 3 20 20 C 1.34519 * 126.74433 * 34.70495 * 19 2 1 21 21 N 1.30681 * 108.28530 * 179.89572 * 20 19 2 22 22 C 1.33963 * 109.78161 * 0.37847 * 21 20 19 23 23 C 1.48481 * 125.64540 * 179.72640 * 22 21 20 24 24 N 1.34043 * 126.66932 * 180.02562 * 23 22 21 25 25 N 1.28994 * 107.26533 * 179.97438 * 24 23 22 26 26 N 1.28732 * 108.94047 * 359.97438 * 25 24 23 27 27 H 0.96997 * 125.33419 * 179.97438 * 26 25 24 28 28 N 1.28868 * 109.31929 * 359.77031 * 26 25 24 29 29 N 1.31462 * 108.70451 * 359.76635 * 22 21 20 30 30 H 1.09003 * 109.46643 * 300.00012 * 1 2 3 31 31 H 1.09001 * 109.47338 * 59.99453 * 1 2 3 32 32 H 1.08999 * 109.47423 * 179.97438 * 1 2 3 33 33 H 0.97000 * 120.00673 * 185.01277 * 11 10 8 34 34 H 1.08996 * 113.61212 * 334.57294 * 16 7 6 35 35 H 1.09001 * 113.60863 * 105.47134 * 16 7 6 36 36 H 1.09000 * 113.53773 * 270.80795 * 17 16 7 37 37 H 1.08997 * 113.74256 * 139.94844 * 17 16 7 38 38 H 1.08998 * 113.61127 * 220.08859 * 18 17 16 39 39 H 1.08994 * 113.68906 * 89.19770 * 18 17 16 40 40 H 1.07993 * 125.85800 * 0.03631 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 2.7269 -1.6928 -1.1197 6 8 1.7080 -0.2518 -2.4496 7 6 2.3186 -0.9156 -3.5876 8 6 1.8821 -2.3507 -3.7313 9 1 2.6067 -3.1468 -3.6445 10 6 0.5577 -2.6476 -3.9736 11 7 -0.3444 -1.6908 -3.9566 12 14 0.0445 -4.4087 -4.3262 13 1 1.2395 -5.2897 -4.2875 14 1 -0.9320 -4.8547 -3.3002 15 1 -0.5817 -4.4823 -5.6706 16 6 3.8424 -0.7240 -3.6677 17 6 3.6622 -0.5706 -5.1890 18 6 2.2251 -0.1095 -4.8939 19 7 2.0183 -0.6907 1.1961 20 6 1.4511 -1.7493 1.8020 21 7 2.1862 -2.0744 2.8324 22 6 3.2309 -1.2410 2.9251 23 6 4.2855 -1.2881 3.9692 24 7 5.3379 -0.4656 4.0818 25 7 6.0089 -0.8418 5.1173 26 7 5.4216 -1.8562 5.6497 27 1 5.7250 -2.3285 6.4408 28 7 4.3654 -2.1429 4.9694 29 7 3.1673 -0.3739 1.9389 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -1.2846 -1.9087 -4.0546 34 1 4.1949 0.1826 -3.1760 35 1 4.4093 -1.6099 -3.3814 36 1 3.7153 -1.5147 -5.7311 37 1 4.2882 0.2058 -5.6289 38 1 1.4885 -0.4999 -5.5961 39 1 2.1333 0.9654 -4.7382 40 1 0.5451 -2.2467 1.4892 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589028753.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:00 Heat of formation + Delta-G solvation = 168.804603 kcal Electronic energy + Delta-G solvation = -28615.297022 eV Core-core repulsion = 24472.227091 eV Total energy + Delta-G solvation = -4143.069931 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.63735 -42.11712 -39.54343 -37.43878 -35.09794 -34.45405 -34.38362 -33.31657 -32.41282 -31.44705 -29.96524 -26.38044 -25.42859 -24.96445 -24.68557 -24.55061 -23.27698 -21.94454 -21.12688 -19.95428 -19.26475 -18.67434 -17.39470 -17.24836 -17.12206 -16.23832 -15.80293 -15.16181 -15.06196 -14.91609 -14.78507 -14.39825 -14.03589 -13.99084 -13.31561 -12.86978 -12.49162 -12.39950 -12.31768 -12.02381 -11.69420 -11.58587 -11.49116 -11.30106 -11.29399 -11.17558 -11.10548 -10.99975 -10.60387 -10.34854 -10.10492 -10.07104 -10.00171 -9.93065 -9.58251 -9.24733 -8.91763 -8.67447 -8.64942 -6.23917 -4.35014 0.78557 1.22742 1.78178 1.98423 2.25404 3.13180 3.14281 3.16613 3.25165 3.26249 3.32909 3.71483 3.88530 4.25566 4.61564 4.62394 4.90148 4.98596 5.03802 5.22481 5.32669 5.44108 5.62772 5.65718 5.68202 5.80658 5.97883 6.06584 6.10738 6.18595 6.26377 6.29422 6.43359 6.54884 6.74160 6.83000 7.01783 7.18146 7.42048 7.64424 7.75495 7.87399 8.05416 8.18455 8.68479 8.94425 9.34675 10.80123 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016120 B = 0.003216 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.599729 B = 8703.374520 C = 9159.734247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.156 3.844 3 H 0.135 0.865 4 C 0.452 3.548 5 O -0.492 6.492 6 O -0.336 6.336 7 C 0.241 3.759 8 C -0.511 4.511 9 H 0.068 0.932 10 C 0.077 3.923 11 N -0.860 5.860 12 Si 0.892 3.108 13 H -0.270 1.270 14 H -0.282 1.282 15 H -0.281 1.281 16 C -0.161 4.161 17 C -0.131 4.131 18 C -0.105 4.105 19 N -0.347 5.347 20 C 0.283 3.717 21 N -0.517 5.517 22 C 0.291 3.709 23 C 0.270 3.730 24 N -0.243 5.243 25 N -0.051 5.051 26 N -0.227 5.227 27 H 0.477 0.523 28 N -0.256 5.256 29 N -0.254 5.254 30 H 0.073 0.927 31 H 0.108 0.892 32 H 0.074 0.926 33 H 0.263 0.737 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.458 3.423 12.731 13.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.052 3.948 3 H 0.152 0.848 4 C 0.290 3.710 5 O -0.379 6.379 6 O -0.251 6.251 7 C 0.208 3.792 8 C -0.548 4.548 9 H 0.086 0.914 10 C -0.129 4.129 11 N -0.496 5.496 12 Si 0.719 3.281 13 H -0.195 1.195 14 H -0.208 1.208 15 H -0.206 1.206 16 C -0.199 4.199 17 C -0.169 4.169 18 C -0.143 4.143 19 N -0.138 5.138 20 C -0.013 4.013 21 N -0.244 5.244 22 C 0.008 3.992 23 C -0.013 4.013 24 N -0.117 5.117 25 N -0.046 5.046 26 N -0.074 5.074 27 H 0.332 0.668 28 N -0.110 5.110 29 N -0.086 5.086 30 H 0.092 0.908 31 H 0.127 0.873 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 3.426 3.713 12.890 13.844 hybrid contribution -0.732 -1.627 -0.125 1.789 sum 2.694 2.085 12.765 13.212 Atomic orbital electron populations 1.22105 0.89158 1.04800 1.05061 1.21087 0.97011 0.97454 0.79275 0.84764 1.22652 0.78994 0.83565 0.85761 1.90651 1.35254 1.24578 1.87404 1.86487 1.65912 1.59216 1.13505 1.21314 0.86207 0.92099 0.79614 1.20994 0.94281 0.90150 1.49385 0.91365 1.25048 0.96621 0.97430 0.93786 1.70028 1.01081 1.31607 1.46901 0.86529 0.78818 0.84675 0.78092 1.19484 1.20776 1.20649 1.23578 0.99790 1.00340 0.96157 1.22562 0.97492 1.00729 0.96099 1.22898 0.95721 0.98073 0.97637 1.50275 1.17642 1.24502 1.21391 1.25979 0.99095 0.87559 0.88685 1.70504 1.05593 1.27140 1.21198 1.19501 0.93102 0.93636 0.92985 1.21326 0.94399 0.91843 0.93717 1.76234 1.03833 1.21945 1.09716 1.78976 1.19898 1.01249 1.04487 1.47806 1.14484 1.21431 1.23643 0.66798 1.75096 1.06035 1.23416 1.06436 1.78351 1.02163 1.22275 1.05765 0.90840 0.87336 0.90749 0.92704 0.92130 0.91860 0.90192 0.92824 0.90584 0.92123 0.75847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 8.78 37.16 0.33 -1.59 16 2 C 0.16 2.45 3.87 -69.08 -0.27 2.18 16 3 H 0.13 1.84 8.14 -51.93 -0.42 1.42 16 4 C 0.45 9.50 6.88 36.01 0.25 9.75 16 5 O -0.49 -12.03 14.88 -18.75 -0.28 -12.31 16 6 O -0.34 -7.62 9.69 -39.23 -0.38 -8.00 16 7 C 0.24 5.70 0.47 -90.96 -0.04 5.65 16 8 C -0.51 -13.35 7.01 -34.45 -0.24 -13.60 16 9 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 10 C 0.08 1.98 5.28 -17.82 -0.09 1.88 16 11 N -0.86 -22.04 12.73 55.43 0.71 -21.34 16 12 Si 0.89 20.22 29.55 -169.99 -5.02 15.20 16 13 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 16 C -0.16 -3.46 6.64 -25.82 -0.17 -3.63 16 17 C -0.13 -2.54 7.81 -25.83 -0.20 -2.74 16 18 C -0.11 -2.26 7.26 -25.91 -0.19 -2.45 16 19 N -0.35 -5.74 3.04 -57.26 -0.17 -5.92 16 20 C 0.28 4.35 11.75 -90.70 -1.07 3.28 16 21 N -0.52 -8.76 11.21 -12.37 -0.14 -8.90 16 22 C 0.29 5.11 8.08 -156.63 -1.27 3.84 16 23 C 0.27 4.28 8.31 -156.30 -1.30 2.99 16 24 N -0.24 -3.75 12.54 32.16 0.40 -3.35 16 25 N -0.05 -0.61 13.47 60.35 0.81 0.20 16 26 N -0.23 -2.09 7.90 60.35 0.48 -1.61 16 27 H 0.48 1.72 8.96 -340.37 -3.05 -1.33 16 28 N -0.26 -3.36 12.40 32.17 0.40 -2.96 16 29 N -0.25 -4.62 12.73 32.11 0.41 -4.21 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.11 1.43 8.11 -51.93 -0.42 1.01 16 32 H 0.07 0.95 7.21 -51.93 -0.37 0.57 16 33 H 0.26 6.42 8.32 -40.82 -0.34 6.08 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.06 1.44 8.09 -51.93 -0.42 1.02 16 36 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 1.75 7.91 -51.93 -0.41 1.34 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.23 2.60 7.30 -52.49 -0.38 2.21 16 LS Contribution 356.16 15.07 5.37 5.37 Total: -1.00 -33.83 356.16 -8.83 -42.65 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -7.14 Total: -0.39 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: -4.26 Total: 5.57 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: 2.89 Total: -48.08 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.66 Total: -20.31 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.83 -8.83 -42.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589028753.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.457 kcal (2) G-P(sol) polarization free energy of solvation -33.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 177.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 168.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds