Wall clock time and date at job start Tue Mar 31 2020 18:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47644 * 2 1 4 4 C 1.50708 * 109.46742 * 240.00331 * 2 1 3 5 5 O 1.20830 * 119.99428 * 240.00231 * 4 2 1 6 6 O 1.34218 * 120.00241 * 60.00263 * 4 2 1 7 7 C 1.45201 * 117.00179 * 174.88742 * 6 4 2 8 8 C 1.50691 * 112.85150 * 65.14122 * 7 6 4 9 9 H 1.08001 * 120.00048 * 243.03105 * 8 7 6 10 10 C 1.37872 * 120.00283 * 63.03009 * 8 7 6 11 11 N 1.31513 * 120.00186 * 353.71489 * 10 8 7 12 12 Si 1.86800 * 120.00394 * 173.70710 * 10 8 7 13 13 H 1.48508 * 109.46893 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.47305 * 120.00024 * 12 10 8 15 15 H 1.48495 * 109.47713 * 240.00497 * 12 10 8 16 16 C 1.53788 * 113.61094 * 293.94251 * 7 6 4 17 17 C 1.53955 * 87.01784 * 220.04843 * 16 7 6 18 18 C 1.53784 * 87.11366 * 25.36517 * 17 16 7 19 19 N 1.46497 * 109.47176 * 120.00565 * 2 1 3 20 20 C 1.34519 * 126.74433 * 34.70495 * 19 2 1 21 21 N 1.30681 * 108.28530 * 179.89572 * 20 19 2 22 22 C 1.33963 * 109.78161 * 0.37847 * 21 20 19 23 23 C 1.48481 * 125.64540 * 179.72640 * 22 21 20 24 24 N 1.34043 * 126.66932 * 180.02562 * 23 22 21 25 25 N 1.28994 * 107.26533 * 179.97438 * 24 23 22 26 26 N 1.28732 * 108.94047 * 359.97438 * 25 24 23 27 27 H 0.96997 * 125.33419 * 179.97438 * 26 25 24 28 28 N 1.28868 * 109.31929 * 359.77031 * 26 25 24 29 29 N 1.31462 * 108.70451 * 359.76635 * 22 21 20 30 30 H 1.09003 * 109.46643 * 300.00012 * 1 2 3 31 31 H 1.09001 * 109.47338 * 59.99453 * 1 2 3 32 32 H 1.08999 * 109.47423 * 179.97438 * 1 2 3 33 33 H 0.97000 * 120.00673 * 185.01277 * 11 10 8 34 34 H 1.08996 * 113.61212 * 334.57294 * 16 7 6 35 35 H 1.09001 * 113.60863 * 105.47134 * 16 7 6 36 36 H 1.09000 * 113.53773 * 270.80795 * 17 16 7 37 37 H 1.08997 * 113.74256 * 139.94844 * 17 16 7 38 38 H 1.08998 * 113.61127 * 220.08859 * 18 17 16 39 39 H 1.08994 * 113.68906 * 89.19770 * 18 17 16 40 40 H 1.07993 * 125.85800 * 0.03631 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 2.7269 -1.6928 -1.1197 6 8 1.7080 -0.2518 -2.4496 7 6 2.3186 -0.9156 -3.5876 8 6 1.8821 -2.3507 -3.7313 9 1 2.6067 -3.1468 -3.6445 10 6 0.5577 -2.6476 -3.9736 11 7 -0.3444 -1.6908 -3.9566 12 14 0.0445 -4.4087 -4.3262 13 1 1.2395 -5.2897 -4.2875 14 1 -0.9320 -4.8547 -3.3002 15 1 -0.5817 -4.4823 -5.6706 16 6 3.8424 -0.7240 -3.6677 17 6 3.6622 -0.5706 -5.1890 18 6 2.2251 -0.1095 -4.8939 19 7 2.0183 -0.6907 1.1961 20 6 1.4511 -1.7493 1.8020 21 7 2.1862 -2.0744 2.8324 22 6 3.2309 -1.2410 2.9251 23 6 4.2855 -1.2881 3.9692 24 7 5.3379 -0.4656 4.0818 25 7 6.0089 -0.8418 5.1173 26 7 5.4216 -1.8562 5.6497 27 1 5.7250 -2.3285 6.4408 28 7 4.3654 -2.1429 4.9694 29 7 3.1673 -0.3739 1.9389 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -1.2846 -1.9087 -4.0546 34 1 4.1949 0.1826 -3.1760 35 1 4.4093 -1.6099 -3.3814 36 1 3.7153 -1.5147 -5.7311 37 1 4.2882 0.2058 -5.6289 38 1 1.4885 -0.4999 -5.5961 39 1 2.1333 0.9654 -4.7382 40 1 0.5451 -2.2467 1.4892 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589028753.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:59 Heat of formation + Delta-G solvation = 147.151479 kcal Electronic energy + Delta-G solvation = -28616.235971 eV Core-core repulsion = 24472.227091 eV Total energy + Delta-G solvation = -4144.008881 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.65782 -43.37266 -41.23692 -39.10505 -36.39675 -36.12351 -35.50944 -34.40068 -34.34861 -32.70024 -31.15241 -28.23747 -26.62556 -26.39667 -26.12265 -25.73734 -24.83203 -23.33889 -22.30862 -21.37992 -20.46950 -20.24839 -18.96298 -18.50842 -18.35654 -17.73752 -17.15174 -16.92423 -16.69329 -16.33599 -16.14002 -15.90455 -15.70963 -15.11410 -14.84863 -14.41427 -13.82662 -13.54662 -13.51374 -13.42569 -13.24067 -13.00402 -12.92009 -12.82199 -12.64040 -12.58053 -12.40156 -12.35267 -12.29702 -12.12008 -11.82458 -11.66980 -11.46070 -11.36330 -11.00757 -10.79587 -10.68877 -10.46679 -10.41073 -8.18060 -6.34529 -0.29754 0.10302 0.62394 0.84698 1.31750 1.35566 1.40527 1.49582 1.53114 1.90768 2.13384 2.24154 2.37930 2.76245 3.10096 3.44560 3.52826 3.74669 3.82346 3.86582 3.99599 4.06659 4.12985 4.22534 4.31766 4.52797 4.59253 4.72598 4.82553 4.84907 4.92018 4.94382 5.12409 5.20227 5.35035 5.42848 5.50861 5.55212 5.65328 5.74819 5.96722 6.38356 6.67671 6.68354 6.96084 7.20152 7.38466 8.85513 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016120 B = 0.003216 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.599729 B = 8703.374520 C = 9159.734247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.167 3.833 3 H 0.156 0.844 4 C 0.445 3.555 5 O -0.534 6.534 6 O -0.341 6.341 7 C 0.222 3.778 8 C -0.530 4.530 9 H 0.039 0.961 10 C 0.047 3.953 11 N -0.872 5.872 12 Si 0.940 3.060 13 H -0.283 1.283 14 H -0.275 1.275 15 H -0.271 1.271 16 C -0.158 4.158 17 C -0.114 4.114 18 C -0.101 4.101 19 N -0.353 5.353 20 C 0.287 3.713 21 N -0.532 5.532 22 C 0.286 3.714 23 C 0.248 3.752 24 N -0.271 5.271 25 N -0.044 5.044 26 N -0.188 5.188 27 H 0.500 0.500 28 N -0.255 5.255 29 N -0.283 5.283 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.071 0.929 33 H 0.268 0.732 34 H 0.072 0.928 35 H 0.039 0.961 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.055 0.945 39 H 0.077 0.923 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.893 3.911 13.643 14.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.063 3.937 3 H 0.173 0.827 4 C 0.286 3.714 5 O -0.424 6.424 6 O -0.256 6.256 7 C 0.188 3.812 8 C -0.567 4.567 9 H 0.057 0.943 10 C -0.158 4.158 11 N -0.509 5.509 12 Si 0.766 3.234 13 H -0.208 1.208 14 H -0.200 1.200 15 H -0.197 1.197 16 C -0.196 4.196 17 C -0.151 4.151 18 C -0.139 4.139 19 N -0.144 5.144 20 C -0.009 4.009 21 N -0.260 5.260 22 C 0.002 3.998 23 C -0.035 4.035 24 N -0.145 5.145 25 N -0.039 5.039 26 N -0.041 5.041 27 H 0.361 0.639 28 N -0.110 5.110 29 N -0.114 5.114 30 H 0.129 0.871 31 H 0.122 0.878 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 2.863 4.216 13.820 14.730 hybrid contribution -0.479 -1.839 -0.279 1.921 sum 2.383 2.377 13.541 13.953 Atomic orbital electron populations 1.22124 0.86358 1.05128 1.06601 1.21193 0.98812 0.97244 0.76479 0.82655 1.23662 0.77955 0.83161 0.86606 1.90630 1.37118 1.26662 1.87946 1.86451 1.66048 1.58920 1.14228 1.21426 0.87470 0.91547 0.80776 1.20965 0.94227 0.90950 1.50600 0.94280 1.25506 0.96496 1.00197 0.93616 1.70059 1.01281 1.32535 1.46980 0.85802 0.77982 0.81206 0.78444 1.20823 1.20021 1.19653 1.23531 0.98259 0.99761 0.98073 1.22492 0.96590 1.01512 0.94529 1.22855 0.96410 0.98635 0.95993 1.50314 1.17524 1.25089 1.21459 1.26674 0.99511 0.86840 0.87874 1.70519 1.05906 1.27444 1.22113 1.19838 0.93455 0.93354 0.93104 1.21281 0.94770 0.92989 0.94475 1.76219 1.04319 1.22929 1.11068 1.78904 1.19447 1.01665 1.03908 1.47853 1.12811 1.20162 1.23274 0.63901 1.75041 1.06957 1.22924 1.06074 1.78280 1.03194 1.23383 1.06529 0.87141 0.87822 0.91038 0.92285 0.90990 0.94172 0.90827 0.89130 0.92590 0.90443 0.72725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.78 71.98 0.63 -2.66 16 2 C 0.17 5.03 3.87 44.25 0.17 5.20 16 3 H 0.16 4.01 8.14 -2.39 -0.02 3.99 16 4 C 0.44 18.74 6.88 71.24 0.49 19.24 16 5 O -0.53 -26.74 14.88 21.95 0.33 -26.41 16 6 O -0.34 -15.48 9.69 -51.30 -0.50 -15.97 16 7 C 0.22 10.56 0.47 -11.01 -0.01 10.56 16 8 C -0.53 -28.35 7.01 25.60 0.18 -28.17 16 9 H 0.04 2.26 7.81 -2.91 -0.02 2.24 16 10 C 0.05 2.40 5.28 84.65 0.45 2.85 16 11 N -0.87 -44.46 12.73 21.45 0.27 -44.19 16 12 Si 0.94 41.65 29.55 68.60 2.03 43.67 16 13 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 14 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 15 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 16 C -0.16 -6.84 6.64 31.18 0.21 -6.63 16 17 C -0.11 -4.28 7.81 31.18 0.24 -4.04 16 18 C -0.10 -4.27 7.26 31.12 0.23 -4.05 16 19 N -0.35 -11.40 3.04 -335.07 -1.02 -12.42 16 20 C 0.29 8.50 11.75 180.38 2.12 10.62 16 21 N -0.53 -17.71 11.21 -193.06 -2.16 -19.88 16 22 C 0.29 10.00 8.08 137.50 1.11 11.11 16 23 C 0.25 7.76 8.31 137.39 1.14 8.90 16 24 N -0.27 -8.28 12.54 -52.17 -0.65 -8.94 16 25 N -0.04 -1.01 13.47 37.02 0.50 -0.51 16 26 N -0.19 -3.12 7.90 37.02 0.29 -2.83 16 27 H 0.50 2.34 8.96 -347.54 -3.12 -0.77 16 28 N -0.25 -6.37 12.40 -52.12 -0.65 -7.02 16 29 N -0.28 -10.26 12.73 -52.32 -0.67 -10.92 16 30 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.10 2.54 8.11 -2.39 -0.02 2.52 16 32 H 0.07 1.68 7.21 -2.39 -0.02 1.67 16 33 H 0.27 12.86 8.32 -92.71 -0.77 12.09 16 34 H 0.07 2.88 8.14 -2.39 -0.02 2.87 16 35 H 0.04 1.88 8.09 -2.39 -0.02 1.86 16 36 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 37 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 38 H 0.06 2.57 7.91 -2.39 -0.02 2.55 16 39 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 40 H 0.26 5.45 7.30 -2.91 -0.02 5.43 16 Total: -1.00 -74.81 356.16 2.73 -72.07 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -2.00 Total: 10.42 kcal Atomic # 6 Polarization: 15.96 SS G_CDS: 6.96 Total: 22.92 kcal Atomic # 7 Polarization: -102.62 SS G_CDS: -4.09 Total: -106.70 kcal Atomic # 8 Polarization: -42.21 SS G_CDS: -0.17 Total: -42.39 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.67 kcal Total: -74.81 2.73 -72.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589028753.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.226 kcal (2) G-P(sol) polarization free energy of solvation -74.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds