Wall clock time and date at job start Tue Mar 31 2020 18:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47497 * 2 1 4 4 C 1.50697 * 109.46815 * 120.00201 * 2 1 3 5 5 O 1.20821 * 120.00229 * 120.00087 * 4 2 1 6 6 O 1.34237 * 120.00215 * 299.99375 * 4 2 1 7 7 C 1.45196 * 117.00117 * 175.19421 * 6 4 2 8 8 C 1.50699 * 112.85301 * 54.50544 * 7 6 4 9 9 H 1.07994 * 120.00016 * 244.95545 * 8 7 6 10 10 C 1.37870 * 119.99787 * 64.95519 * 8 7 6 11 11 N 1.31519 * 120.00248 * 354.95678 * 10 8 7 12 12 Si 1.86793 * 120.00094 * 174.96108 * 10 8 7 13 13 H 1.48500 * 109.47033 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.47547 * 119.99836 * 12 10 8 15 15 H 1.48498 * 109.47328 * 239.99912 * 12 10 8 16 16 C 1.53783 * 113.61263 * 283.19846 * 7 6 4 17 17 C 1.53773 * 87.08286 * 220.02166 * 16 7 6 18 18 C 1.53782 * 87.08361 * 25.43358 * 17 16 7 19 19 N 1.46499 * 109.47088 * 239.99726 * 2 1 3 20 20 C 1.34524 * 126.74323 * 325.00422 * 19 2 1 21 21 N 1.30679 * 108.28592 * 179.97438 * 20 19 2 22 22 C 1.33958 * 109.77976 * 359.97438 * 21 20 19 23 23 C 1.48488 * 125.64492 * 179.97438 * 22 21 20 24 24 N 1.34042 * 126.67078 * 180.02562 * 23 22 21 25 25 N 1.28990 * 107.26744 * 179.97438 * 24 23 22 26 26 N 1.28730 * 108.94172 * 0.02562 * 25 24 23 27 27 H 0.97002 * 125.34411 * 179.97438 * 26 25 24 28 28 N 1.28880 * 109.31689 * 359.76260 * 26 25 24 29 29 N 1.31458 * 108.70986 * 0.02562 * 22 21 20 30 30 H 1.09003 * 109.47174 * 59.99518 * 1 2 3 31 31 H 1.08997 * 109.47497 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46829 * 300.00185 * 1 2 3 33 33 H 0.97003 * 120.00566 * 185.00212 * 11 10 8 34 34 H 1.09003 * 113.61816 * 334.57171 * 16 7 6 35 35 H 1.09001 * 113.61275 * 105.47010 * 16 7 6 36 36 H 1.09002 * 113.61553 * 270.88814 * 17 16 7 37 37 H 1.09003 * 113.69361 * 139.99454 * 17 16 7 38 38 H 1.08990 * 113.61880 * 220.02179 * 18 17 16 39 39 H 1.08997 * 113.69261 * 89.12200 * 18 17 16 40 40 H 1.07993 * 125.85725 * 359.73361 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 1.2304 5 8 2.7269 -1.6928 1.1196 6 8 1.7080 -0.2518 2.4497 7 6 2.1362 -1.0453 3.5878 8 6 3.6182 -1.3187 3.5863 9 1 3.9806 -2.3302 3.4777 10 6 4.5114 -0.2774 3.7234 11 7 4.0755 0.9630 3.7559 12 14 6.3407 -0.6283 3.8631 13 1 6.5698 -2.0942 3.8003 14 1 7.0587 0.0337 2.7443 15 1 6.8482 -0.1036 5.1562 16 6 1.2769 -2.2987 3.8231 17 6 1.3879 -1.9966 5.3267 18 6 1.6070 -0.5257 4.9350 19 7 2.0183 -0.6907 -1.1961 20 6 1.4540 -1.7526 -1.7990 21 7 2.1864 -2.0747 -2.8322 22 6 3.2306 -1.2407 -2.9253 23 6 4.2858 -1.2885 -3.9689 24 7 5.3383 -0.4661 -4.0814 25 7 6.0105 -0.8437 -5.1155 26 7 5.4240 -1.8588 -5.6473 27 1 5.7278 -2.3318 -6.4378 28 7 4.3723 -2.1508 -4.9620 29 7 3.1670 -0.3736 -1.9393 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 4.7072 1.6987 3.7793 34 1 0.2624 -2.2120 3.4340 35 1 1.7671 -3.2261 3.5266 36 1 2.2551 -2.4557 5.8015 37 1 0.4632 -2.1687 5.8775 38 1 2.3636 -0.0217 5.5362 39 1 0.6835 0.0470 4.8497 40 1 0.5527 -2.2554 -1.4811 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589028765.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:04 Heat of formation + Delta-G solvation = 170.649653 kcal Electronic energy + Delta-G solvation = -28699.769769 eV Core-core repulsion = 24556.779845 eV Total energy + Delta-G solvation = -4142.989924 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.58769 -42.10859 -39.50429 -37.44876 -35.10340 -34.41724 -34.35334 -33.28659 -32.33569 -31.44323 -29.99816 -26.33372 -25.46349 -24.93012 -24.67580 -24.55063 -23.26428 -21.93668 -21.10561 -19.95078 -19.22848 -18.66231 -17.37888 -17.23773 -17.11020 -16.14610 -15.72714 -15.27771 -14.95345 -14.92291 -14.73968 -14.48711 -13.99447 -13.92309 -13.41413 -12.77460 -12.50103 -12.44182 -12.37827 -12.14309 -11.68729 -11.56601 -11.45532 -11.26491 -11.24584 -11.22290 -11.04011 -10.91010 -10.54597 -10.29522 -10.10850 -10.06976 -9.99208 -9.90265 -9.55171 -9.22825 -8.90047 -8.65940 -8.56058 -6.17521 -4.26468 0.82836 1.27723 1.80950 2.00321 2.28257 3.15358 3.19498 3.24592 3.28981 3.34987 3.39369 3.73131 3.91330 4.34137 4.56533 4.59303 4.89844 4.98352 5.11075 5.21901 5.30718 5.41328 5.56778 5.57669 5.66504 5.78049 5.86778 6.01198 6.08413 6.21440 6.24026 6.28443 6.40043 6.52338 6.74862 6.77635 7.01015 7.22510 7.44368 7.66184 7.81472 7.90002 8.08832 8.24008 8.74913 8.98479 9.41995 10.87086 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013362 B = 0.003750 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.014528 B = 7464.106397 C = 8823.877751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.152 3.848 3 H 0.138 0.862 4 C 0.453 3.547 5 O -0.482 6.482 6 O -0.342 6.342 7 C 0.239 3.761 8 C -0.506 4.506 9 H 0.068 0.932 10 C 0.076 3.924 11 N -0.864 5.864 12 Si 0.891 3.109 13 H -0.271 1.271 14 H -0.281 1.281 15 H -0.281 1.281 16 C -0.161 4.161 17 C -0.130 4.130 18 C -0.105 4.105 19 N -0.345 5.345 20 C 0.276 3.724 21 N -0.516 5.516 22 C 0.289 3.711 23 C 0.270 3.730 24 N -0.241 5.241 25 N -0.050 5.050 26 N -0.227 5.227 27 H 0.477 0.523 28 N -0.257 5.257 29 N -0.245 5.245 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.264 0.736 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.553 -2.728 -12.241 14.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.048 3.952 3 H 0.156 0.844 4 C 0.291 3.709 5 O -0.369 6.369 6 O -0.258 6.258 7 C 0.206 3.794 8 C -0.543 4.543 9 H 0.086 0.914 10 C -0.129 4.129 11 N -0.501 5.501 12 Si 0.719 3.281 13 H -0.195 1.195 14 H -0.207 1.207 15 H -0.207 1.207 16 C -0.199 4.199 17 C -0.168 4.168 18 C -0.143 4.143 19 N -0.137 5.137 20 C -0.021 4.021 21 N -0.244 5.244 22 C 0.006 3.994 23 C -0.013 4.013 24 N -0.115 5.115 25 N -0.046 5.046 26 N -0.074 5.074 27 H 0.332 0.668 28 N -0.111 5.111 29 N -0.076 5.076 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.122 0.878 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -6.332 -2.303 -12.408 14.120 hybrid contribution 0.823 -0.659 -0.018 1.055 sum -5.509 -2.962 -12.427 13.912 Atomic orbital electron populations 1.22120 0.89712 1.04155 1.05271 1.21091 0.96282 0.98345 0.79499 0.84412 1.22546 0.79306 0.83467 0.85549 1.90658 1.33105 1.25877 1.87232 1.86442 1.71259 1.54337 1.13732 1.21322 0.93260 0.85247 0.79561 1.20949 0.88418 0.94448 1.50488 0.91406 1.25017 0.99243 0.95029 0.93646 1.69999 1.34615 0.98157 1.47311 0.86524 0.84966 0.78907 0.77743 1.19520 1.20692 1.20667 1.23566 0.99109 1.00581 0.96628 1.22508 1.00309 0.98355 0.95622 1.22895 0.99701 0.94860 0.96848 1.50244 1.17742 1.24254 1.21432 1.25903 0.99216 0.87882 0.89095 1.70468 1.05666 1.27188 1.21038 1.19511 0.93086 0.93768 0.93018 1.21323 0.94444 0.91643 0.93894 1.76264 1.03601 1.22032 1.09625 1.78989 1.19783 1.01333 1.04451 1.47807 1.14781 1.21333 1.23502 0.66836 1.75074 1.06323 1.23196 1.06516 1.78460 1.01667 1.22118 1.05376 0.90423 0.91083 0.87814 0.92641 0.91987 0.92041 0.90193 0.92832 0.90457 0.92160 0.75972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.78 37.16 0.33 -1.27 16 2 C 0.15 2.41 3.87 -69.08 -0.27 2.14 16 3 H 0.14 2.16 8.14 -51.93 -0.42 1.74 16 4 C 0.45 9.63 6.97 36.00 0.25 9.88 16 5 O -0.48 -12.00 14.74 -18.75 -0.28 -12.28 16 6 O -0.34 -7.76 9.83 -39.28 -0.39 -8.14 16 7 C 0.24 5.64 0.50 -90.96 -0.05 5.60 16 8 C -0.51 -13.66 6.29 -34.44 -0.22 -13.87 16 9 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 10 C 0.08 2.09 5.24 -17.82 -0.09 1.99 16 11 N -0.86 -23.85 12.54 55.43 0.69 -23.15 16 12 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 13 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 C -0.16 -3.25 7.28 -25.92 -0.19 -3.44 16 17 C -0.13 -2.44 7.80 -25.92 -0.20 -2.65 16 18 C -0.11 -2.25 7.19 -25.92 -0.19 -2.44 16 19 N -0.35 -5.78 3.04 -57.26 -0.17 -5.95 16 20 C 0.28 4.00 11.75 -90.70 -1.07 2.93 16 21 N -0.52 -8.62 11.21 -12.37 -0.14 -8.76 16 22 C 0.29 5.26 8.08 -156.64 -1.27 3.99 16 23 C 0.27 4.50 8.31 -156.30 -1.30 3.21 16 24 N -0.24 -4.02 12.54 32.16 0.40 -3.62 16 25 N -0.05 -0.66 13.47 60.35 0.81 0.16 16 26 N -0.23 -2.25 7.90 60.35 0.48 -1.77 16 27 H 0.48 1.99 8.96 -340.36 -3.05 -1.06 16 28 N -0.26 -3.51 12.40 32.18 0.40 -3.11 16 29 N -0.25 -4.76 12.73 32.11 0.41 -4.35 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.63 7.21 -51.93 -0.37 0.26 16 32 H 0.10 1.04 8.11 -51.93 -0.42 0.62 16 33 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 1.30 8.09 -51.93 -0.42 0.88 16 36 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 1.82 7.63 -51.93 -0.40 1.42 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.22 2.13 7.31 -52.49 -0.38 1.74 16 LS Contribution 355.62 15.07 5.36 5.36 Total: -1.00 -36.09 355.62 -8.82 -44.92 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -7.13 Total: -2.25 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: -4.25 Total: 6.07 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: 2.88 Total: -50.55 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.66 Total: -20.42 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.09 -8.82 -44.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589028765.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.565 kcal (2) G-P(sol) polarization free energy of solvation -36.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds