Wall clock time and date at job start Tue Mar 31 2020 18:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47497 * 2 1 4 4 C 1.50697 * 109.46815 * 120.00201 * 2 1 3 5 5 O 1.20821 * 120.00229 * 120.00087 * 4 2 1 6 6 O 1.34237 * 120.00215 * 299.99375 * 4 2 1 7 7 C 1.45196 * 117.00117 * 175.19421 * 6 4 2 8 8 C 1.50699 * 112.85301 * 54.50544 * 7 6 4 9 9 H 1.07994 * 120.00016 * 244.95545 * 8 7 6 10 10 C 1.37870 * 119.99787 * 64.95519 * 8 7 6 11 11 N 1.31519 * 120.00248 * 354.95678 * 10 8 7 12 12 Si 1.86793 * 120.00094 * 174.96108 * 10 8 7 13 13 H 1.48500 * 109.47033 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.47547 * 119.99836 * 12 10 8 15 15 H 1.48498 * 109.47328 * 239.99912 * 12 10 8 16 16 C 1.53783 * 113.61263 * 283.19846 * 7 6 4 17 17 C 1.53773 * 87.08286 * 220.02166 * 16 7 6 18 18 C 1.53782 * 87.08361 * 25.43358 * 17 16 7 19 19 N 1.46499 * 109.47088 * 239.99726 * 2 1 3 20 20 C 1.34524 * 126.74323 * 325.00422 * 19 2 1 21 21 N 1.30679 * 108.28592 * 179.97438 * 20 19 2 22 22 C 1.33958 * 109.77976 * 359.97438 * 21 20 19 23 23 C 1.48488 * 125.64492 * 179.97438 * 22 21 20 24 24 N 1.34042 * 126.67078 * 180.02562 * 23 22 21 25 25 N 1.28990 * 107.26744 * 179.97438 * 24 23 22 26 26 N 1.28730 * 108.94172 * 0.02562 * 25 24 23 27 27 H 0.97002 * 125.34411 * 179.97438 * 26 25 24 28 28 N 1.28880 * 109.31689 * 359.76260 * 26 25 24 29 29 N 1.31458 * 108.70986 * 0.02562 * 22 21 20 30 30 H 1.09003 * 109.47174 * 59.99518 * 1 2 3 31 31 H 1.08997 * 109.47497 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46829 * 300.00185 * 1 2 3 33 33 H 0.97003 * 120.00566 * 185.00212 * 11 10 8 34 34 H 1.09003 * 113.61816 * 334.57171 * 16 7 6 35 35 H 1.09001 * 113.61275 * 105.47010 * 16 7 6 36 36 H 1.09002 * 113.61553 * 270.88814 * 17 16 7 37 37 H 1.09003 * 113.69361 * 139.99454 * 17 16 7 38 38 H 1.08990 * 113.61880 * 220.02179 * 18 17 16 39 39 H 1.08997 * 113.69261 * 89.12200 * 18 17 16 40 40 H 1.07993 * 125.85725 * 359.73361 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 1.2304 5 8 2.7269 -1.6928 1.1196 6 8 1.7080 -0.2518 2.4497 7 6 2.1362 -1.0453 3.5878 8 6 3.6182 -1.3187 3.5863 9 1 3.9806 -2.3302 3.4777 10 6 4.5114 -0.2774 3.7234 11 7 4.0755 0.9630 3.7559 12 14 6.3407 -0.6283 3.8631 13 1 6.5698 -2.0942 3.8003 14 1 7.0587 0.0337 2.7443 15 1 6.8482 -0.1036 5.1562 16 6 1.2769 -2.2987 3.8231 17 6 1.3879 -1.9966 5.3267 18 6 1.6070 -0.5257 4.9350 19 7 2.0183 -0.6907 -1.1961 20 6 1.4540 -1.7526 -1.7990 21 7 2.1864 -2.0747 -2.8322 22 6 3.2306 -1.2407 -2.9253 23 6 4.2858 -1.2885 -3.9689 24 7 5.3383 -0.4661 -4.0814 25 7 6.0105 -0.8437 -5.1155 26 7 5.4240 -1.8588 -5.6473 27 1 5.7278 -2.3318 -6.4378 28 7 4.3723 -2.1508 -4.9620 29 7 3.1670 -0.3736 -1.9393 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 4.7072 1.6987 3.7793 34 1 0.2624 -2.2120 3.4340 35 1 1.7671 -3.2261 3.5266 36 1 2.2551 -2.4557 5.8015 37 1 0.4632 -2.1687 5.8775 38 1 2.3636 -0.0217 5.5362 39 1 0.6835 0.0470 4.8497 40 1 0.5527 -2.2554 -1.4811 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589028765.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:03 Heat of formation + Delta-G solvation = 146.153725 kcal Electronic energy + Delta-G solvation = -28700.831992 eV Core-core repulsion = 24556.779845 eV Total energy + Delta-G solvation = -4144.052147 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.67554 -43.35443 -41.19490 -39.08776 -36.39196 -36.08909 -35.52866 -34.42975 -34.35846 -32.68888 -31.14809 -28.24078 -26.61096 -26.32846 -26.14010 -25.76350 -24.80828 -23.30967 -22.31518 -21.35898 -20.46993 -20.26767 -18.98611 -18.47256 -18.37075 -17.64052 -17.11235 -16.97508 -16.72284 -16.30422 -16.18837 -15.95407 -15.60495 -15.13418 -14.95280 -14.17346 -13.97766 -13.54469 -13.49127 -13.40981 -13.24569 -13.01099 -12.98702 -12.85725 -12.67455 -12.51981 -12.40777 -12.37178 -12.21295 -12.14913 -11.85386 -11.61862 -11.42237 -11.34229 -10.99213 -10.84600 -10.69587 -10.43344 -10.38452 -8.25163 -6.36536 -0.30161 0.09650 0.64466 0.87870 1.24840 1.30630 1.32932 1.38680 1.57028 1.91286 2.14353 2.26046 2.31565 2.75693 3.06842 3.46047 3.54107 3.75352 3.86529 3.88961 4.04708 4.12296 4.14348 4.23756 4.38211 4.56407 4.62143 4.75187 4.84851 4.90673 4.95923 4.98975 5.17591 5.19276 5.37971 5.49112 5.50116 5.59865 5.64032 5.79004 5.94646 6.42390 6.64688 6.69372 6.94771 7.22545 7.35999 8.78355 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013362 B = 0.003750 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.014528 B = 7464.106397 C = 8823.877751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.162 3.838 3 H 0.134 0.866 4 C 0.446 3.554 5 O -0.527 6.527 6 O -0.345 6.345 7 C 0.214 3.786 8 C -0.515 4.515 9 H 0.041 0.959 10 C 0.039 3.961 11 N -0.884 5.884 12 Si 0.930 3.070 13 H -0.277 1.277 14 H -0.291 1.291 15 H -0.264 1.264 16 C -0.150 4.150 17 C -0.114 4.114 18 C -0.104 4.104 19 N -0.354 5.354 20 C 0.289 3.711 21 N -0.531 5.531 22 C 0.284 3.716 23 C 0.247 3.753 24 N -0.277 5.277 25 N -0.046 5.046 26 N -0.187 5.187 27 H 0.500 0.500 28 N -0.251 5.251 29 N -0.294 5.294 30 H 0.107 0.893 31 H 0.091 0.909 32 H 0.110 0.890 33 H 0.263 0.737 34 H 0.091 0.909 35 H 0.043 0.957 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.047 0.953 39 H 0.081 0.919 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.759 -3.417 -12.997 16.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.058 3.942 3 H 0.152 0.848 4 C 0.287 3.713 5 O -0.416 6.416 6 O -0.261 6.261 7 C 0.181 3.819 8 C -0.552 4.552 9 H 0.059 0.941 10 C -0.164 4.164 11 N -0.521 5.521 12 Si 0.757 3.243 13 H -0.202 1.202 14 H -0.217 1.217 15 H -0.189 1.189 16 C -0.188 4.188 17 C -0.152 4.152 18 C -0.141 4.141 19 N -0.145 5.145 20 C -0.007 4.007 21 N -0.259 5.259 22 C 0.001 3.999 23 C -0.036 4.036 24 N -0.151 5.151 25 N -0.041 5.041 26 N -0.040 5.040 27 H 0.361 0.639 28 N -0.107 5.107 29 N -0.125 5.125 30 H 0.125 0.875 31 H 0.110 0.890 32 H 0.129 0.871 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.066 0.934 39 H 0.100 0.900 40 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -8.530 -2.983 -13.172 15.974 hybrid contribution 1.543 -0.541 0.079 1.637 sum -6.987 -3.524 -13.093 15.253 Atomic orbital electron populations 1.22226 0.84851 1.06154 1.07060 1.21220 0.99587 0.96761 0.76670 0.84836 1.23571 0.78189 0.83076 0.86440 1.90636 1.35070 1.28087 1.87812 1.86403 1.71029 1.54221 1.14406 1.21474 0.92095 0.87691 0.80674 1.21030 0.90984 0.93059 1.50139 0.94115 1.25493 1.01723 0.95211 0.94003 1.70040 1.35102 0.98308 1.48686 0.85932 0.82228 0.78151 0.77984 1.20190 1.21743 1.18869 1.23502 0.99684 0.97971 0.97613 1.22436 1.01817 0.95829 0.95091 1.22879 0.99564 0.96510 0.95184 1.50300 1.17441 1.25207 1.21544 1.26888 0.99601 0.86516 0.87655 1.70494 1.05814 1.27388 1.22237 1.19826 0.93563 0.93542 0.92946 1.21345 0.94796 0.92706 0.94772 1.76245 1.04367 1.23315 1.11143 1.78909 1.19401 1.01882 1.03900 1.47861 1.13097 1.19979 1.23101 0.63867 1.75020 1.07105 1.22516 1.06021 1.78367 1.03576 1.23880 1.06681 0.87452 0.88991 0.87127 0.92751 0.89015 0.93773 0.91407 0.88661 0.93397 0.90046 0.71259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 8.78 71.98 0.63 -1.86 16 2 C 0.16 4.93 3.87 44.24 0.17 5.10 16 3 H 0.13 4.17 8.14 -2.39 -0.02 4.15 16 4 C 0.45 18.86 6.97 71.24 0.50 19.36 16 5 O -0.53 -26.64 14.74 21.98 0.32 -26.32 16 6 O -0.35 -15.48 9.83 -51.48 -0.51 -15.99 16 7 C 0.21 10.06 0.50 -11.01 -0.01 10.06 16 8 C -0.51 -28.50 6.29 25.60 0.16 -28.34 16 9 H 0.04 2.41 7.81 -2.91 -0.02 2.39 16 10 C 0.04 2.17 5.24 84.65 0.44 2.62 16 11 N -0.88 -49.77 12.54 21.45 0.27 -49.50 16 12 Si 0.93 46.04 29.54 68.60 2.03 48.06 16 13 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 14 H -0.29 -14.76 7.11 99.48 0.71 -14.05 16 15 H -0.26 -12.22 7.11 99.48 0.71 -11.52 16 16 C -0.15 -5.81 7.28 31.12 0.23 -5.58 16 17 C -0.11 -4.05 7.80 31.12 0.24 -3.80 16 18 C -0.10 -4.32 7.19 31.12 0.22 -4.09 16 19 N -0.35 -11.55 3.04 -335.07 -1.02 -12.57 16 20 C 0.29 7.82 11.75 180.37 2.12 9.93 16 21 N -0.53 -17.25 11.21 -193.05 -2.16 -19.42 16 22 C 0.28 10.41 8.08 137.51 1.11 11.52 16 23 C 0.25 8.26 8.31 137.39 1.14 9.40 16 24 N -0.28 -9.35 12.54 -52.17 -0.65 -10.00 16 25 N -0.05 -1.17 13.47 37.02 0.50 -0.67 16 26 N -0.19 -3.42 7.90 37.02 0.29 -3.13 16 27 H 0.50 3.00 8.96 -347.53 -3.12 -0.11 16 28 N -0.25 -6.60 12.40 -52.12 -0.65 -7.25 16 29 N -0.29 -11.60 12.73 -52.32 -0.67 -12.27 16 30 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.09 1.21 7.21 -2.39 -0.02 1.20 16 32 H 0.11 1.83 8.11 -2.38 -0.02 1.81 16 33 H 0.26 14.29 8.32 -92.71 -0.77 13.52 16 34 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 35 H 0.04 1.84 8.09 -2.39 -0.02 1.82 16 36 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.05 2.26 7.63 -2.39 -0.02 2.24 16 39 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 40 H 0.27 4.10 7.31 -2.91 -0.02 4.08 16 Total: -1.00 -82.75 355.62 2.72 -80.03 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -2.00 Total: 4.71 kcal Atomic # 6 Polarization: 17.35 SS G_CDS: 6.96 Total: 24.31 kcal Atomic # 7 Polarization: -110.72 SS G_CDS: -4.09 Total: -114.81 kcal Atomic # 8 Polarization: -42.12 SS G_CDS: -0.18 Total: -42.30 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.06 kcal Total: -82.75 2.72 -80.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589028765.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.181 kcal (2) G-P(sol) polarization free energy of solvation -82.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds