Wall clock time and date at job start Tue Mar 31 2020 17:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.47162 * 2 1 4 4 C 1.50697 * 109.46690 * 240.00295 * 2 1 3 5 5 H 1.08002 * 119.99965 * 239.99971 * 4 2 1 6 6 C 1.37877 * 120.00490 * 59.99966 * 4 2 1 7 7 N 1.31514 * 119.99545 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00173 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47173 * 59.99901 * 8 6 4 10 10 H 1.48497 * 109.47169 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47241 * 299.99984 * 8 6 4 12 12 C 1.52996 * 109.47146 * 120.00093 * 2 1 3 13 13 N 1.46498 * 109.47059 * 299.99645 * 12 2 1 14 14 C 1.39037 * 119.99830 * 179.72500 * 13 12 2 15 15 N 1.32458 * 119.65229 * 0.27538 * 14 13 12 16 16 C 1.31985 * 121.89660 * 179.97438 * 15 14 13 17 17 C 1.37855 * 120.97143 * 0.02562 * 16 15 14 18 18 C 1.39889 * 119.19552 * 359.97438 * 17 16 15 19 19 C 1.48467 * 120.85962 * 180.02562 * 18 17 16 20 20 N 1.34051 * 126.66893 * 179.69211 * 19 18 17 21 21 N 1.28984 * 107.26533 * 179.83923 * 20 19 18 22 22 N 1.28739 * 108.94426 * 0.42788 * 21 20 19 23 23 H 0.96999 * 125.34190 * 179.73130 * 22 21 20 24 24 N 1.28874 * 109.31533 * 359.72820 * 22 21 20 25 25 C 1.38902 * 119.65336 * 180.02562 * 14 13 12 26 26 N 1.48030 * 120.51600 * 0.02562 * 25 14 13 27 27 O 1.21793 * 119.99954 * 90.00201 * 26 25 14 28 28 O 1.21793 * 119.99711 * 269.99422 * 26 25 14 29 29 H 1.09003 * 109.46863 * 299.99777 * 1 2 3 30 30 H 1.09001 * 109.47172 * 59.99859 * 1 2 3 31 31 H 1.09000 * 109.46753 * 180.02562 * 1 2 3 32 32 H 1.08990 * 109.47258 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46739 * 300.00411 * 3 2 1 34 34 H 1.08999 * 109.47407 * 59.99680 * 3 2 1 35 35 H 0.97004 * 119.99855 * 180.02562 * 7 6 4 36 36 H 1.09004 * 109.47066 * 179.97438 * 12 2 1 37 37 H 1.08994 * 109.46974 * 60.00060 * 12 2 1 38 38 H 0.97001 * 120.00384 * 0.02562 * 13 12 2 39 39 H 1.08004 * 119.51244 * 180.02562 * 16 15 14 40 40 H 1.08002 * 120.40013 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3224 -1.1195 -4.0080 9 1 1.8279 -2.5197 -4.0082 10 1 1.8268 -0.4199 -5.2204 11 1 3.8074 -1.1189 -4.0078 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0306 2.4454 14 6 1.8830 -0.5090 3.7081 15 7 2.6449 -1.5865 3.8216 16 6 2.9867 -2.0783 4.9978 17 6 2.5596 -1.4844 6.1663 18 6 1.7528 -0.3437 6.0967 19 6 1.2725 0.3259 7.3317 20 7 0.5037 1.4218 7.4009 21 7 0.3105 1.6756 8.6506 22 7 0.9299 0.7950 9.3566 23 1 0.9469 0.7638 10.3259 24 7 1.5238 -0.0384 8.5733 25 6 1.4157 0.1511 4.8374 26 7 0.5686 1.3579 4.7060 27 8 -0.6430 1.2482 4.6492 28 8 1.0833 2.4606 4.6549 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9564 0.8899 35 1 0.7081 1.1609 -3.4844 36 1 3.1301 -0.7216 1.2490 37 1 1.6768 -1.7489 1.2492 38 1 0.9939 0.7579 2.3564 39 1 3.6102 -2.9589 5.0455 40 1 2.8445 -1.8948 7.1238 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589267474.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:04 Heat of formation + Delta-G solvation = 169.479471 kcal Electronic energy + Delta-G solvation = -28712.550519 eV Core-core repulsion = 24569.509853 eV Total energy + Delta-G solvation = -4143.040667 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -44.97526 -41.99742 -40.34444 -37.33855 -36.14226 -35.26805 -34.63099 -34.09235 -32.27968 -31.56913 -29.82849 -26.86013 -26.11006 -25.77135 -25.42076 -24.96038 -24.35640 -22.75792 -21.92526 -19.89850 -19.31549 -18.67294 -18.46960 -18.26544 -17.62830 -17.35157 -16.22281 -15.87549 -15.60565 -14.98853 -14.78300 -14.68022 -14.42489 -13.94732 -13.41676 -13.34952 -12.90364 -12.66801 -12.29550 -12.13420 -11.77860 -11.65999 -11.55267 -11.33154 -11.24603 -11.04779 -10.99323 -10.76468 -10.76237 -10.57814 -10.23828 -10.21725 -10.01923 -9.93542 -9.61929 -9.44060 -8.86830 -8.43082 -7.94127 -6.05417 -4.17136 -0.04169 0.67438 0.82908 0.83912 1.53610 1.72971 1.89621 2.86518 3.13835 3.27434 3.32839 3.35268 3.35451 3.58586 4.18729 4.36016 4.39633 4.59558 4.64139 4.85415 4.93522 5.21013 5.22782 5.51144 5.86913 5.87731 5.98434 6.15684 6.39759 6.52974 6.67597 6.79203 6.82400 6.95246 6.99387 7.20156 7.31887 7.50391 7.61923 7.65127 7.84087 7.88662 7.95552 8.10144 8.32583 8.82573 9.49001 10.96083 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025082 B = 0.002960 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.069728 B = 9456.607295 C =10263.337789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.056 3.944 3 C -0.133 4.133 4 C -0.509 4.509 5 H 0.058 0.942 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.136 3.864 13 N -0.687 5.687 14 C 0.461 3.539 15 N -0.507 5.507 16 C 0.197 3.803 17 C -0.210 4.210 18 C 0.124 3.876 19 C 0.195 3.805 20 N -0.252 5.252 21 N -0.032 5.032 22 N -0.221 5.221 23 H 0.479 0.521 24 N -0.268 5.268 25 C -0.141 4.141 26 N 0.036 4.964 27 O -0.134 6.134 28 O -0.134 6.134 29 H 0.004 0.996 30 H 0.089 0.911 31 H 0.028 0.972 32 H 0.029 0.971 33 H 0.089 0.911 34 H 0.004 0.996 35 H 0.262 0.738 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.411 0.589 39 H 0.180 0.820 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.765 -4.024 22.815 23.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.055 3.945 3 C -0.191 4.191 4 C -0.548 4.548 5 H 0.077 0.923 6 C -0.134 4.134 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.014 3.986 13 N -0.312 5.312 14 C 0.219 3.781 15 N -0.226 5.226 16 C 0.034 3.966 17 C -0.236 4.236 18 C 0.112 3.888 19 C -0.086 4.086 20 N -0.125 5.125 21 N -0.027 5.027 22 N -0.068 5.068 23 H 0.334 0.666 24 N -0.121 5.121 25 C -0.233 4.233 26 N 0.567 4.433 27 O -0.357 6.357 28 O -0.357 6.357 29 H 0.023 0.977 30 H 0.107 0.893 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.107 0.893 34 H 0.023 0.977 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.250 0.750 39 H 0.197 0.803 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.111 -4.502 22.007 22.677 hybrid contribution -0.152 0.195 0.397 0.468 sum 2.959 -4.306 22.404 23.005 Atomic orbital electron populations 1.21864 0.97580 0.99314 1.00337 1.18402 0.92948 0.92867 0.90297 1.21858 0.98674 0.98225 1.00337 1.20861 1.31992 1.12274 0.89667 0.92346 1.24889 0.94761 0.94882 0.98908 1.69797 1.36196 1.22572 1.23539 0.86599 0.79186 0.79733 0.82127 1.20262 1.21271 1.20256 1.21985 0.98556 0.95889 0.82137 1.45676 1.51977 1.31042 1.02506 1.17887 0.87655 0.87787 0.84790 1.67667 1.15750 1.11079 1.28102 1.22831 0.91773 0.96382 0.85564 1.21794 1.03237 0.96821 1.01786 1.16775 0.94191 0.93204 0.84623 1.23347 0.99386 0.94214 0.91620 1.76288 1.14388 1.12655 1.09161 1.79013 1.13504 1.12872 0.97342 1.47816 1.30410 1.15714 1.12866 0.66558 1.74864 1.18689 1.17301 1.01226 1.21080 1.11337 0.95912 0.95006 1.42985 1.01016 1.01622 0.97715 1.94546 0.96122 1.93281 1.51743 1.94546 1.77035 1.12317 1.51793 0.97673 0.89259 0.95240 0.95231 0.89273 0.97660 0.92770 0.91761 0.91777 0.75025 0.80268 0.82487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.08 37.16 0.30 -2.80 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -3.10 8.08 37.16 0.30 -2.80 16 4 C -0.51 -13.04 8.01 -34.44 -0.28 -13.32 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 6 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 7 N -0.88 -23.62 9.35 55.43 0.52 -23.10 16 8 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 C 0.14 2.73 4.52 -4.04 -0.02 2.72 16 13 N -0.69 -12.71 5.10 -60.47 -0.31 -13.02 16 14 C 0.46 7.62 7.47 -155.02 -1.16 6.46 16 15 N -0.51 -7.33 9.55 -12.51 -0.12 -7.45 16 16 C 0.20 1.96 11.16 -17.63 -0.20 1.76 16 17 C -0.21 -2.05 9.79 -39.10 -0.38 -2.43 16 18 C 0.12 1.65 5.91 -104.62 -0.62 1.03 16 19 C 0.19 2.53 7.94 -156.30 -1.24 1.29 16 20 N -0.25 -3.69 10.77 32.16 0.35 -3.34 16 21 N -0.03 -0.36 13.47 60.35 0.81 0.45 16 22 N -0.22 -1.62 7.90 60.35 0.48 -1.15 16 23 H 0.48 0.85 8.96 -340.36 -3.05 -2.20 16 24 N -0.27 -2.60 12.17 32.17 0.39 -2.21 16 25 C -0.14 -2.26 6.21 -79.25 -0.49 -2.76 16 26 N 0.04 0.64 1.87 34.30 0.06 0.70 16 27 O -0.13 -2.52 19.11 -29.46 -0.56 -3.08 16 28 O -0.13 -2.52 19.13 -29.46 -0.56 -3.09 16 29 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 30 H 0.09 2.29 6.07 -51.93 -0.32 1.97 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 34 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 35 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 36 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.41 7.95 5.39 -40.82 -0.22 7.73 16 39 H 0.18 1.00 8.06 -52.48 -0.42 0.58 16 40 H 0.16 1.04 7.97 -52.49 -0.42 0.63 16 LS Contribution 346.96 15.07 5.23 5.23 Total: -1.00 -31.25 346.96 -9.38 -40.63 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -6.69 Total: 1.99 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -3.95 Total: -7.98 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: 2.18 Total: -49.10 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: -1.13 Total: -6.17 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.25 -9.38 -40.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589267474.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.111 kcal (2) G-P(sol) polarization free energy of solvation -31.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 178.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds