Wall clock time and date at job start Tue Mar 31 2020 17:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.47162 * 2 1 4 4 C 1.50697 * 109.46690 * 240.00295 * 2 1 3 5 5 H 1.08002 * 119.99965 * 239.99971 * 4 2 1 6 6 C 1.37877 * 120.00490 * 59.99966 * 4 2 1 7 7 N 1.31514 * 119.99545 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00173 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47173 * 59.99901 * 8 6 4 10 10 H 1.48497 * 109.47169 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47241 * 299.99984 * 8 6 4 12 12 C 1.52996 * 109.47146 * 120.00093 * 2 1 3 13 13 N 1.46498 * 109.47059 * 299.99645 * 12 2 1 14 14 C 1.39037 * 119.99830 * 179.72500 * 13 12 2 15 15 N 1.32458 * 119.65229 * 0.27538 * 14 13 12 16 16 C 1.31985 * 121.89660 * 179.97438 * 15 14 13 17 17 C 1.37855 * 120.97143 * 0.02562 * 16 15 14 18 18 C 1.39889 * 119.19552 * 359.97438 * 17 16 15 19 19 C 1.48467 * 120.85962 * 180.02562 * 18 17 16 20 20 N 1.34051 * 126.66893 * 179.69211 * 19 18 17 21 21 N 1.28984 * 107.26533 * 179.83923 * 20 19 18 22 22 N 1.28739 * 108.94426 * 0.42788 * 21 20 19 23 23 H 0.96999 * 125.34190 * 179.73130 * 22 21 20 24 24 N 1.28874 * 109.31533 * 359.72820 * 22 21 20 25 25 C 1.38902 * 119.65336 * 180.02562 * 14 13 12 26 26 N 1.48030 * 120.51600 * 0.02562 * 25 14 13 27 27 O 1.21793 * 119.99954 * 90.00201 * 26 25 14 28 28 O 1.21793 * 119.99711 * 269.99422 * 26 25 14 29 29 H 1.09003 * 109.46863 * 299.99777 * 1 2 3 30 30 H 1.09001 * 109.47172 * 59.99859 * 1 2 3 31 31 H 1.09000 * 109.46753 * 180.02562 * 1 2 3 32 32 H 1.08990 * 109.47258 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46739 * 300.00411 * 3 2 1 34 34 H 1.08999 * 109.47407 * 59.99680 * 3 2 1 35 35 H 0.97004 * 119.99855 * 180.02562 * 7 6 4 36 36 H 1.09004 * 109.47066 * 179.97438 * 12 2 1 37 37 H 1.08994 * 109.46974 * 60.00060 * 12 2 1 38 38 H 0.97001 * 120.00384 * 0.02562 * 13 12 2 39 39 H 1.08004 * 119.51244 * 180.02562 * 16 15 14 40 40 H 1.08002 * 120.40013 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3224 -1.1195 -4.0080 9 1 1.8279 -2.5197 -4.0082 10 1 1.8268 -0.4199 -5.2204 11 1 3.8074 -1.1189 -4.0078 12 6 2.0401 -0.7213 1.2492 13 7 1.5518 -0.0306 2.4454 14 6 1.8830 -0.5090 3.7081 15 7 2.6449 -1.5865 3.8216 16 6 2.9867 -2.0783 4.9978 17 6 2.5596 -1.4844 6.1663 18 6 1.7528 -0.3437 6.0967 19 6 1.2725 0.3259 7.3317 20 7 0.5037 1.4218 7.4009 21 7 0.3105 1.6756 8.6506 22 7 0.9299 0.7950 9.3566 23 1 0.9469 0.7638 10.3259 24 7 1.5238 -0.0384 8.5733 25 6 1.4157 0.1511 4.8374 26 7 0.5686 1.3579 4.7060 27 8 -0.6430 1.2482 4.6492 28 8 1.0833 2.4606 4.6549 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9564 0.8899 35 1 0.7081 1.1609 -3.4844 36 1 3.1301 -0.7216 1.2490 37 1 1.6768 -1.7489 1.2492 38 1 0.9939 0.7579 2.3564 39 1 3.6102 -2.9589 5.0455 40 1 2.8445 -1.8948 7.1238 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589267474.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:02 Heat of formation + Delta-G solvation = 149.611285 kcal Electronic energy + Delta-G solvation = -28713.412069 eV Core-core repulsion = 24569.509853 eV Total energy + Delta-G solvation = -4143.902216 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.80948 -43.27293 -41.46377 -38.89868 -37.52065 -36.39553 -35.76087 -35.17206 -33.49810 -33.04355 -31.14871 -27.97780 -27.67882 -27.62690 -27.07880 -25.93386 -25.63010 -23.86089 -23.00381 -20.88800 -20.75684 -20.04076 -19.82347 -19.44246 -18.54772 -18.45393 -17.80158 -17.17809 -17.05388 -16.32654 -16.21269 -15.63976 -15.42152 -15.35661 -14.87147 -14.81133 -14.14012 -14.13010 -13.51345 -13.46680 -13.15259 -13.02251 -12.76376 -12.73598 -12.62775 -12.58992 -12.56114 -12.36215 -12.33406 -12.19789 -12.14584 -11.71999 -11.33020 -11.26441 -11.02746 -10.98391 -10.75446 -10.40515 -9.18340 -8.02445 -6.20127 -0.99719 -0.57671 -0.22318 -0.09592 0.33107 0.93755 1.09989 1.46760 1.47166 1.54050 1.75611 2.15246 2.37129 2.46536 2.68858 3.20677 3.21598 3.30681 3.59002 3.71448 3.99666 4.06183 4.25786 4.35871 4.47314 4.61785 4.71184 4.87414 4.93743 5.00117 5.06723 5.10494 5.20815 5.37360 5.39907 5.57181 5.64559 5.71183 5.89696 6.02852 6.15125 6.37409 6.45618 6.70801 6.77025 6.85689 7.48482 8.97161 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025082 B = 0.002960 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.069728 B = 9456.607295 C =10263.337789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.050 3.950 3 C -0.121 4.121 4 C -0.524 4.524 5 H 0.058 0.942 6 C 0.024 3.976 7 N -0.905 5.905 8 Si 0.952 3.048 9 H -0.273 1.273 10 H -0.289 1.289 11 H -0.273 1.273 12 C 0.159 3.841 13 N -0.705 5.705 14 C 0.448 3.552 15 N -0.524 5.524 16 C 0.208 3.792 17 C -0.174 4.174 18 C 0.110 3.890 19 C 0.176 3.824 20 N -0.299 5.299 21 N -0.042 5.042 22 N -0.184 5.184 23 H 0.502 0.498 24 N -0.246 5.246 25 C -0.163 4.163 26 N 0.043 4.957 27 O -0.156 6.156 28 O -0.156 6.156 29 H 0.015 0.985 30 H 0.063 0.937 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.063 0.937 34 H 0.015 0.985 35 H 0.260 0.740 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.403 0.597 39 H 0.234 0.766 40 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.482 -6.476 25.457 26.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.049 3.951 3 C -0.179 4.179 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.176 4.176 7 N -0.544 5.544 8 Si 0.779 3.221 9 H -0.198 1.198 10 H -0.214 1.214 11 H -0.198 1.198 12 C 0.037 3.963 13 N -0.331 5.331 14 C 0.209 3.791 15 N -0.244 5.244 16 C 0.047 3.953 17 C -0.199 4.199 18 C 0.099 3.901 19 C -0.104 4.104 20 N -0.171 5.171 21 N -0.037 5.037 22 N -0.037 5.037 23 H 0.363 0.637 24 N -0.100 5.100 25 C -0.255 4.255 26 N 0.571 4.429 27 O -0.378 6.378 28 O -0.378 6.378 29 H 0.034 0.966 30 H 0.082 0.918 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.082 0.918 34 H 0.034 0.966 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.239 0.761 39 H 0.250 0.750 40 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 4.829 -6.954 24.716 26.126 hybrid contribution -0.609 0.845 -0.135 1.050 sum 4.221 -6.109 24.581 25.678 Atomic orbital electron populations 1.21695 0.97941 0.98795 0.99504 1.18390 0.92639 0.92767 0.91310 1.21690 0.98305 0.98437 0.99504 1.21194 1.31888 1.12391 0.90790 0.92350 1.25572 0.95052 0.95529 1.01444 1.69942 1.37049 1.23605 1.23754 0.85704 0.78725 0.78744 0.78977 1.19818 1.21427 1.19808 1.21473 0.97950 0.95155 0.81723 1.45396 1.53414 1.31359 1.02963 1.17934 0.88551 0.88694 0.83917 1.67750 1.15642 1.10433 1.30552 1.23801 0.90556 0.96864 0.84069 1.22360 0.99714 0.94172 1.03608 1.17114 0.94955 0.94316 0.83756 1.23368 1.00151 0.94423 0.92450 1.76279 1.16032 1.14164 1.10648 1.78952 1.14204 1.13657 0.96844 1.47909 1.28003 1.13920 1.13835 0.63720 1.74811 1.18093 1.16982 1.00095 1.21174 1.12529 0.95493 0.96277 1.43267 1.00944 1.02149 0.96526 1.94515 0.97267 1.93541 1.52446 1.94515 1.76981 1.13778 1.52501 0.96649 0.91813 0.95476 0.95468 0.91828 0.96637 0.93075 0.92181 0.92193 0.76051 0.74990 0.78262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.82 8.08 71.99 0.58 -5.24 16 2 C 0.05 2.34 0.50 -52.93 -0.03 2.31 16 3 C -0.12 -5.82 8.08 71.98 0.58 -5.24 16 4 C -0.52 -27.12 8.01 25.60 0.21 -26.91 16 5 H 0.06 2.95 7.74 -2.91 -0.02 2.93 16 6 C 0.02 1.24 5.15 84.65 0.44 1.68 16 7 N -0.91 -49.60 9.35 21.45 0.20 -49.40 16 8 Si 0.95 42.09 29.54 68.60 2.03 44.11 16 9 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 10 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 12 C 0.16 6.46 4.52 86.38 0.39 6.85 16 13 N -0.70 -26.46 5.10 -345.21 -1.76 -28.22 16 14 C 0.45 14.57 7.47 132.98 0.99 15.56 16 15 N -0.52 -13.94 9.55 -193.50 -1.85 -15.79 16 16 C 0.21 3.18 11.16 84.58 0.94 4.12 16 17 C -0.17 -2.57 9.79 22.58 0.22 -2.35 16 18 C 0.11 2.70 5.91 -19.86 -0.12 2.58 16 19 C 0.18 4.25 7.94 137.38 1.09 5.34 16 20 N -0.30 -8.62 10.77 -52.18 -0.56 -9.18 16 21 N -0.04 -0.89 13.47 37.02 0.50 -0.40 16 22 N -0.18 -2.18 7.90 37.02 0.29 -1.89 16 23 H 0.50 0.10 8.96 -347.53 -3.12 -3.01 16 24 N -0.25 -3.96 12.17 -52.13 -0.63 -4.59 16 25 C -0.16 -5.18 6.21 36.82 0.23 -4.95 16 26 N 0.04 1.61 1.87 -45.39 -0.08 1.53 16 27 O -0.16 -6.16 19.11 18.90 0.36 -5.80 16 28 O -0.16 -6.16 19.13 18.89 0.36 -5.80 16 29 H 0.01 0.66 6.86 -2.39 -0.02 0.65 16 30 H 0.06 3.38 6.07 -2.39 -0.01 3.36 16 31 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.06 3.37 6.07 -2.39 -0.01 3.36 16 34 H 0.01 0.67 6.86 -2.39 -0.02 0.65 16 35 H 0.26 13.78 8.31 -92.71 -0.77 13.01 16 36 H 0.06 2.43 8.14 -2.38 -0.02 2.42 16 37 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.40 16.15 5.39 -92.71 -0.50 15.65 16 39 H 0.23 1.02 8.06 -2.91 -0.02 1.00 16 40 H 0.20 1.31 7.97 -2.91 -0.02 1.29 16 Total: -1.00 -71.60 346.96 1.91 -69.69 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -2.47 Total: 11.98 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 5.53 Total: -6.24 kcal Atomic # 7 Polarization: -104.05 SS G_CDS: -3.90 Total: -107.95 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.72 Total: -11.59 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.11 kcal Total: -71.60 1.91 -69.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589267474.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.306 kcal (2) G-P(sol) polarization free energy of solvation -71.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds