Wall clock time and date at job start Tue Mar 31 2020 18:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09008 * 109.46597 * 2 1 4 4 C 1.50699 * 109.47102 * 119.99583 * 2 1 3 5 5 H 1.08001 * 119.99476 * 120.00635 * 4 2 1 6 6 C 1.37875 * 120.00258 * 299.72578 * 4 2 1 7 7 N 1.31512 * 120.00360 * 180.27469 * 6 4 2 8 8 Si 1.86801 * 119.99981 * 0.27768 * 6 4 2 9 9 H 1.48500 * 109.47320 * 89.99625 * 8 6 4 10 10 H 1.48495 * 109.47332 * 209.99885 * 8 6 4 11 11 H 1.48506 * 109.47003 * 329.99747 * 8 6 4 12 12 N 1.46499 * 109.47559 * 240.00196 * 2 1 3 13 13 C 1.34778 * 120.00139 * 84.99206 * 12 2 1 14 14 O 1.21667 * 119.99783 * 0.02562 * 13 12 2 15 15 C 1.46700 * 119.99606 * 180.02562 * 13 12 2 16 16 N 1.29753 * 119.55508 * 359.73539 * 15 13 12 17 17 N 1.39862 * 121.13194 * 179.83936 * 16 15 13 18 18 C 1.40067 * 119.87476 * 199.47818 * 17 16 15 19 19 C 1.38881 * 120.04561 * 131.43579 * 18 17 16 20 20 C 1.38092 * 119.95159 * 179.72425 * 19 18 17 21 21 C 1.38498 * 120.04307 * 0.55523 * 20 19 18 22 22 F 1.35099 * 119.94914 * 179.69908 * 21 20 19 23 23 C 1.38486 * 120.09358 * 359.72652 * 21 20 19 24 24 C 1.38089 * 120.04899 * 359.97438 * 23 21 20 25 25 C 1.34754 * 120.32947 * 19.69773 * 17 16 15 26 26 O 1.21250 * 120.11485 * 179.46928 * 25 17 16 27 27 C 1.50760 * 119.76351 * 359.49556 * 25 17 16 28 28 C 1.50552 * 119.54944 * 180.02562 * 15 13 12 29 29 H 1.09002 * 109.47089 * 60.00344 * 1 2 3 30 30 H 1.08994 * 109.46710 * 180.02562 * 1 2 3 31 31 H 1.08990 * 109.46972 * 300.00163 * 1 2 3 32 32 H 0.96994 * 120.00310 * 180.02562 * 7 6 4 33 33 H 0.96997 * 119.99887 * 265.00342 * 12 2 1 34 34 H 1.07992 * 120.02194 * 359.97438 * 19 18 17 35 35 H 1.07993 * 119.97709 * 180.25437 * 20 19 18 36 36 H 1.07997 * 119.97894 * 179.97438 * 23 21 20 37 37 H 1.08002 * 120.02750 * 180.02562 * 24 23 21 38 38 H 1.09006 * 109.51668 * 206.80365 * 27 25 17 39 39 H 1.08999 * 109.51944 * 86.65182 * 27 25 17 40 40 H 1.09002 * 109.45020 * 265.87094 * 28 15 13 41 41 H 1.09004 * 109.44464 * 25.78496 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6534 -1.5884 1.1314 6 6 1.7040 -0.2359 2.4827 7 7 2.1468 -0.8526 3.5566 8 14 0.6300 1.2828 2.6541 9 1 -0.7974 0.8764 2.7062 10 1 0.9857 2.0023 3.9035 11 1 0.8478 2.1772 1.4887 12 7 2.0185 -0.6905 -1.1962 13 6 2.1471 -0.0182 -2.3572 14 8 1.8580 1.1624 -2.4117 15 6 2.6357 -0.7099 -3.5550 16 7 2.9464 -1.9678 -3.4857 17 7 3.4122 -2.6605 -4.6079 18 6 3.3539 -4.0596 -4.6380 19 6 2.8276 -4.7100 -5.7465 20 6 2.7764 -6.0897 -5.7765 21 6 3.2388 -6.8243 -4.6974 22 9 3.1822 -8.1738 -4.7262 23 6 3.7587 -6.1776 -3.5886 24 6 3.8174 -4.7983 -3.5571 25 6 3.9211 -1.9887 -5.6594 26 8 4.3327 -2.5936 -6.6263 27 6 3.9775 -0.4825 -5.6289 28 6 2.7761 0.0510 -4.8465 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.9155 -0.5191 4.4375 33 1 2.2491 -1.6317 -1.1526 34 1 2.4624 -4.1373 -6.5861 35 1 2.3709 -6.5959 -6.6400 36 1 4.1184 -6.7522 -2.7480 37 1 4.2233 -4.2942 -2.6925 38 1 3.9491 -0.0963 -6.6479 39 1 4.8993 -0.1623 -5.1431 40 1 1.8713 -0.0739 -5.4415 41 1 2.9245 1.1089 -4.6300 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646936943.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:31 Heat of formation + Delta-G solvation = -32.065591 kcal Electronic energy + Delta-G solvation = -27934.571202 eV Core-core repulsion = 23730.578173 eV Total energy + Delta-G solvation = -4203.993029 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.10553 -41.42143 -39.55513 -38.76403 -37.35266 -35.29794 -34.34170 -32.71314 -31.80535 -31.46688 -30.06989 -29.33431 -26.01551 -25.29838 -24.43504 -23.35184 -22.82401 -21.44286 -20.12990 -19.04647 -18.24314 -17.85786 -17.59951 -16.88326 -16.67452 -16.15387 -15.94444 -15.78762 -15.52285 -14.86616 -14.81515 -14.50116 -14.39260 -13.86697 -13.74411 -13.57967 -13.36637 -13.15266 -13.06736 -12.91212 -12.69978 -12.42892 -12.28414 -11.93648 -11.80720 -11.41865 -11.33355 -11.18070 -10.89948 -10.28172 -10.16755 -9.94071 -9.65949 -9.48137 -9.39987 -9.33051 -8.84596 -8.48312 -8.33043 -6.26631 -4.30475 0.69412 0.77362 0.95014 1.76811 2.11251 3.14931 3.18713 3.31223 3.32934 3.33294 3.40647 3.83506 4.00095 4.19062 4.25523 4.47255 4.49215 4.56393 4.66283 4.75186 4.89966 5.01229 5.07586 5.09759 5.26020 5.37285 5.46349 5.61218 5.79759 5.82424 5.87743 6.01509 6.08221 6.21274 6.26268 6.44282 6.57985 6.72044 7.00484 7.10274 7.26021 7.37845 7.56311 7.97768 8.36667 8.53474 8.73644 9.32425 10.85340 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012356 B = 0.003285 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.610598 B = 8520.826049 C =10293.828551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.234 3.766 3 H 0.054 0.946 4 C -0.538 4.538 5 H 0.082 0.918 6 C 0.080 3.920 7 N -0.889 5.889 8 Si 0.884 3.116 9 H -0.275 1.275 10 H -0.293 1.293 11 H -0.261 1.261 12 N -0.671 5.671 13 C 0.561 3.439 14 O -0.536 6.536 15 C 0.102 3.898 16 N -0.211 5.211 17 N -0.412 5.412 18 C 0.144 3.856 19 C -0.076 4.076 20 C -0.142 4.142 21 C 0.097 3.903 22 F -0.138 7.138 23 C -0.140 4.140 24 C -0.075 4.075 25 C 0.498 3.502 26 O -0.506 6.506 27 C -0.139 4.139 28 C -0.110 4.110 29 H 0.037 0.963 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.268 0.732 33 H 0.406 0.594 34 H 0.135 0.865 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.146 0.854 38 H 0.122 0.878 39 H 0.112 0.888 40 H 0.102 0.898 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.808 -5.331 -18.602 19.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.131 3.869 3 H 0.071 0.929 4 C -0.576 4.576 5 H 0.100 0.900 6 C -0.124 4.124 7 N -0.526 5.526 8 Si 0.714 3.286 9 H -0.202 1.202 10 H -0.221 1.221 11 H -0.186 1.186 12 N -0.319 5.319 13 C 0.341 3.659 14 O -0.412 6.412 15 C -0.093 4.093 16 N -0.021 5.021 17 N -0.226 5.226 18 C 0.053 3.947 19 C -0.097 4.097 20 C -0.161 4.161 21 C 0.078 3.922 22 F -0.117 7.117 23 C -0.159 4.159 24 C -0.095 4.095 25 C 0.287 3.713 26 O -0.377 6.377 27 C -0.179 4.179 28 C -0.150 4.150 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.241 0.759 34 H 0.153 0.847 35 H 0.159 0.841 36 H 0.162 0.838 37 H 0.163 0.837 38 H 0.140 0.860 39 H 0.130 0.870 40 H 0.120 0.880 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.939 -5.627 -18.459 19.395 hybrid contribution -0.445 0.571 -0.231 0.759 sum 1.494 -5.057 -18.690 19.419 Atomic orbital electron populations 1.22461 0.98846 1.01191 0.99573 1.19264 0.90456 0.94779 0.82357 0.92877 1.20992 1.33693 1.14570 0.88350 0.89989 1.24813 0.95410 0.96692 0.95461 1.69856 1.44570 1.40060 0.98096 0.86897 0.80595 0.83547 0.77597 1.20218 1.22076 1.18565 1.46253 1.62058 1.14504 1.09075 1.17231 0.79910 0.86435 0.82287 1.90832 1.51587 1.14563 1.84169 1.25286 0.94909 0.91268 0.97879 1.74915 1.08849 1.09099 1.09283 1.46282 1.57568 1.04325 1.14440 1.17382 1.01078 0.79695 0.96532 1.20880 0.97090 0.93687 0.98006 1.20940 1.02946 0.93526 0.98697 1.17751 1.01564 0.77003 0.95910 1.91508 1.94341 1.29035 1.96795 1.21060 1.02083 0.94551 0.98245 1.21030 0.97187 0.92735 0.98530 1.21480 0.76720 0.91458 0.81648 1.90757 1.45103 1.70296 1.31589 1.21877 1.01245 0.89888 1.04912 1.20960 0.98968 1.03209 0.91869 0.94360 0.92569 0.93163 0.92174 0.75884 0.84699 0.84091 0.83772 0.83658 0.86006 0.86987 0.87966 0.86045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 8.97 37.16 0.33 -3.06 16 2 C 0.23 5.22 2.15 -69.08 -0.15 5.07 16 3 H 0.05 1.28 6.63 -51.92 -0.34 0.94 16 4 C -0.54 -13.88 9.31 -34.44 -0.32 -14.20 16 5 H 0.08 2.24 7.98 -52.49 -0.42 1.82 16 6 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 7 N -0.89 -25.51 13.96 55.43 0.77 -24.74 16 8 Si 0.88 20.73 24.37 -169.99 -4.14 16.58 16 9 H -0.28 -6.27 6.88 56.52 0.39 -5.88 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.26 -5.98 6.52 56.52 0.37 -5.61 16 12 N -0.67 -12.46 5.05 -56.24 -0.28 -12.75 16 13 C 0.56 9.45 7.74 -12.84 -0.10 9.35 16 14 O -0.54 -10.33 15.90 5.22 0.08 -10.25 16 15 C 0.10 1.32 6.78 -80.13 -0.54 0.78 16 16 N -0.21 -2.79 10.28 34.90 0.36 -2.43 16 17 N -0.41 -5.20 3.58 -9.82 -0.04 -5.24 16 18 C 0.14 1.78 5.66 -83.62 -0.47 1.31 16 19 C -0.08 -0.86 8.70 -39.40 -0.34 -1.20 16 20 C -0.14 -1.42 10.02 -39.54 -0.40 -1.82 16 21 C 0.10 1.04 7.30 -39.39 -0.29 0.75 16 22 F -0.14 -1.53 17.26 2.25 0.04 -1.49 16 23 C -0.14 -1.45 10.02 -39.54 -0.40 -1.85 16 24 C -0.07 -0.86 9.72 -39.40 -0.38 -1.24 16 25 C 0.50 5.98 7.31 -10.97 -0.08 5.90 16 26 O -0.51 -7.19 15.68 5.58 0.09 -7.10 16 27 C -0.14 -1.20 6.20 -27.86 -0.17 -1.37 16 28 C -0.11 -1.05 5.85 -27.96 -0.16 -1.21 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.05 1.09 3.29 -51.93 -0.17 0.92 16 32 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.41 7.02 7.83 -40.82 -0.32 6.70 16 34 H 0.14 1.45 7.41 -52.49 -0.39 1.06 16 35 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 36 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.12 1.11 7.54 -51.93 -0.39 0.72 16 LS Contribution 351.62 15.07 5.30 5.30 Total: -1.00 -30.88 351.62 -5.99 -36.87 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -4.60 Total: 5.95 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -3.57 Total: -0.71 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 0.81 Total: -45.15 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: 0.17 Total: -17.35 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.14 Total: 16.58 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.88 -5.99 -36.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646936943.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.808 kcal (2) G-P(sol) polarization free energy of solvation -30.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds