Wall clock time and date at job start Tue Mar 31 2020 18:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47430 * 2 1 4 4 C 1.50698 * 109.47116 * 239.99694 * 2 1 3 5 5 H 1.08000 * 120.00028 * 240.00703 * 4 2 1 6 6 C 1.37871 * 119.99925 * 60.00449 * 4 2 1 7 7 N 1.31513 * 120.00348 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99841 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46898 * 60.00368 * 8 6 4 10 10 H 1.48507 * 109.47071 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47191 * 299.99998 * 8 6 4 12 12 N 1.46504 * 109.46517 * 119.99869 * 2 1 3 13 13 C 1.34774 * 120.00207 * 274.99759 * 12 2 1 14 14 O 1.21669 * 120.00041 * 0.02562 * 13 12 2 15 15 C 1.46701 * 120.00183 * 180.02562 * 13 12 2 16 16 N 1.29758 * 119.55283 * 0.02562 * 15 13 12 17 17 N 1.39855 * 121.13426 * 180.08694 * 16 15 13 18 18 C 1.40067 * 119.79924 * 199.16669 * 17 16 15 19 19 C 1.38877 * 120.04869 * 131.48874 * 18 17 16 20 20 C 1.38088 * 119.95779 * 179.97438 * 19 18 17 21 21 C 1.38497 * 120.04268 * 0.25704 * 20 19 18 22 22 F 1.35101 * 119.95124 * 179.72033 * 21 20 19 23 23 C 1.38493 * 120.09021 * 359.49256 * 21 20 19 24 24 C 1.38094 * 120.04563 * 0.50232 * 23 21 20 25 25 C 1.34754 * 120.40374 * 19.43129 * 17 16 15 26 26 O 1.21245 * 120.11552 * 179.46445 * 25 17 16 27 27 C 1.50770 * 119.75921 * 359.22713 * 25 17 16 28 28 C 1.50547 * 119.55104 * 179.97438 * 15 13 12 29 29 H 1.08997 * 109.47219 * 300.00476 * 1 2 3 30 30 H 1.09006 * 109.46677 * 59.99854 * 1 2 3 31 31 H 1.08995 * 109.47815 * 179.97438 * 1 2 3 32 32 H 0.96996 * 120.00256 * 179.97438 * 7 6 4 33 33 H 0.97001 * 120.00008 * 94.99807 * 12 2 1 34 34 H 1.08003 * 120.02142 * 359.95984 * 19 18 17 35 35 H 1.07996 * 119.98094 * 179.97438 * 20 19 18 36 36 H 1.08002 * 119.97646 * 180.25680 * 23 21 20 37 37 H 1.08005 * 120.01942 * 179.76884 * 24 23 21 38 38 H 1.09001 * 109.60674 * 207.12917 * 27 25 17 39 39 H 1.08994 * 109.30356 * 87.04162 * 27 25 17 40 40 H 1.09004 * 109.45021 * 265.88467 * 28 15 13 41 41 H 1.09001 * 109.45049 * 25.80778 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4826 7 7 0.9429 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8280 -2.5199 -4.0080 10 1 1.8281 -0.4194 -5.2204 11 1 3.8076 -1.1192 -4.0076 12 7 2.0182 -0.6906 1.1963 13 6 2.1469 -0.0183 2.3572 14 8 1.8572 1.1621 2.4119 15 6 2.6363 -0.7097 3.5549 16 7 2.9433 -1.9686 3.4867 17 7 3.4111 -2.6607 4.6083 18 6 4.1041 -3.8666 4.4431 19 6 5.3067 -4.0741 5.1060 20 6 5.9881 -5.2639 4.9422 21 6 5.4756 -6.2480 4.1132 22 9 6.1467 -7.4091 3.9498 23 6 4.2740 -6.0451 3.4552 24 6 3.5894 -4.8567 3.6164 25 6 3.1946 -2.1771 5.8473 26 8 3.5941 -2.7863 6.8165 27 6 2.4586 -0.8732 6.0237 28 6 2.7767 0.0513 4.8463 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 0.7090 1.1612 -3.4844 33 1 2.2489 -1.6318 1.1528 34 1 5.7088 -3.3053 5.7492 35 1 6.9235 -5.4255 5.4572 36 1 3.8740 -6.8154 2.8124 37 1 2.6542 -4.6975 3.1002 38 1 2.7723 -0.3990 6.9537 39 1 1.3864 -1.0662 6.0561 40 1 3.7978 0.4211 4.9405 41 1 2.0845 0.8932 4.8486 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646936945.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:35 Heat of formation + Delta-G solvation = -40.733763 kcal Electronic energy + Delta-G solvation = -27888.947466 eV Core-core repulsion = 23684.578557 eV Total energy + Delta-G solvation = -4204.368909 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.10440 -41.37448 -39.40571 -38.72437 -37.26533 -35.07835 -34.28254 -32.71920 -31.66500 -31.45375 -29.72523 -28.77383 -25.93507 -25.34132 -24.35685 -23.29409 -22.79660 -21.36203 -20.01416 -18.94538 -18.14509 -17.83188 -17.56629 -16.84390 -16.61155 -16.04737 -15.78664 -15.67431 -15.32201 -14.77780 -14.66726 -14.45411 -14.35476 -13.86001 -13.73402 -13.56440 -13.28976 -13.09943 -12.94066 -12.63887 -12.49805 -12.43133 -11.81715 -11.73599 -11.33628 -11.22245 -11.09430 -11.01685 -10.86253 -10.43146 -10.30134 -10.09547 -9.69756 -9.44243 -9.39149 -9.15124 -8.63712 -8.43895 -8.10366 -6.19017 -4.28695 0.70868 0.85572 0.95518 1.81857 2.15794 3.18335 3.23219 3.28597 3.29525 3.46812 3.53353 3.89835 4.00496 4.24608 4.29496 4.48130 4.55567 4.59723 4.71158 4.83136 4.91338 5.04650 5.11094 5.14053 5.33447 5.41844 5.55052 5.61338 5.82898 5.86072 5.87218 6.04127 6.10151 6.58902 6.71402 6.83672 7.01658 7.21380 7.28601 7.41308 7.58597 7.64730 7.80068 8.04318 8.43826 8.61643 8.85583 9.38637 10.86963 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010397 B = 0.003498 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.433546 B = 8003.754547 C =10340.345392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.262 3.738 3 H 0.054 0.946 4 C -0.537 4.537 5 H 0.063 0.937 6 C 0.069 3.931 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.677 5.677 13 C 0.557 3.443 14 O -0.535 6.535 15 C 0.105 3.895 16 N -0.216 5.216 17 N -0.413 5.413 18 C 0.146 3.854 19 C -0.076 4.076 20 C -0.141 4.141 21 C 0.096 3.904 22 F -0.139 7.139 23 C -0.141 4.141 24 C -0.076 4.076 25 C 0.498 3.502 26 O -0.508 6.508 27 C -0.139 4.139 28 C -0.111 4.111 29 H 0.016 0.984 30 H 0.093 0.907 31 H 0.028 0.972 32 H 0.266 0.734 33 H 0.399 0.601 34 H 0.135 0.865 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.121 0.879 39 H 0.111 0.889 40 H 0.102 0.898 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.323 -8.450 15.465 18.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.161 3.839 3 H 0.071 0.929 4 C -0.575 4.575 5 H 0.081 0.919 6 C -0.135 4.135 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.325 5.325 13 C 0.337 3.663 14 O -0.410 6.410 15 C -0.090 4.090 16 N -0.026 5.026 17 N -0.227 5.227 18 C 0.055 3.945 19 C -0.097 4.097 20 C -0.161 4.161 21 C 0.077 3.923 22 F -0.117 7.117 23 C -0.160 4.160 24 C -0.096 4.096 25 C 0.287 3.713 26 O -0.379 6.379 27 C -0.179 4.179 28 C -0.151 4.151 29 H 0.035 0.965 30 H 0.112 0.888 31 H 0.048 0.952 32 H 0.076 0.924 33 H 0.234 0.766 34 H 0.153 0.847 35 H 0.159 0.841 36 H 0.161 0.839 37 H 0.162 0.838 38 H 0.140 0.860 39 H 0.129 0.871 40 H 0.121 0.879 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.307 -8.610 15.382 18.409 hybrid contribution 0.484 -0.583 -0.334 0.828 sum 5.790 -9.193 15.048 18.561 Atomic orbital electron populations 1.22094 0.97967 0.99426 1.01184 1.18918 0.91329 0.94123 0.79546 0.92853 1.21147 1.32792 1.13440 0.90118 0.91912 1.24859 0.94678 0.94904 0.99043 1.69875 1.35646 1.22361 1.24163 0.86490 0.79238 0.79628 0.81670 1.20079 1.21093 1.20115 1.46614 1.61848 1.14232 1.09803 1.17233 0.80173 0.86550 0.82331 1.90837 1.51439 1.14586 1.84167 1.25430 0.95654 0.90026 0.97929 1.74940 1.09581 1.08552 1.09531 1.46293 1.53166 1.20207 1.03051 1.17376 0.91864 0.84581 1.00678 1.20892 0.91947 0.97667 0.99153 1.20944 1.01726 0.93075 1.00310 1.17746 0.92368 0.82894 0.99312 1.91506 1.79661 1.46253 1.94296 1.21043 0.94456 0.98844 1.01665 1.21003 1.00185 0.90679 0.97704 1.21483 0.79824 0.87785 0.82217 1.90751 1.49323 1.59880 1.37984 1.21881 1.02648 0.91876 1.01472 1.20976 1.05925 0.99501 0.88679 0.96455 0.88840 0.95235 0.92402 0.76642 0.84670 0.84088 0.83868 0.83777 0.86040 0.87111 0.87944 0.86033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 9.26 37.16 0.34 -3.11 16 2 C 0.26 6.26 2.56 -69.08 -0.18 6.08 16 3 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 4 C -0.54 -13.61 8.73 -34.44 -0.30 -13.91 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -23.87 11.32 55.43 0.63 -23.25 16 8 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 9 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 10 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 N -0.68 -13.26 5.05 -56.24 -0.28 -13.54 16 13 C 0.56 10.03 7.74 -12.84 -0.10 9.93 16 14 O -0.53 -11.12 15.90 5.22 0.08 -11.04 16 15 C 0.10 1.44 6.78 -80.13 -0.54 0.90 16 16 N -0.22 -2.96 10.28 34.90 0.36 -2.60 16 17 N -0.41 -5.36 3.58 -9.82 -0.04 -5.40 16 18 C 0.15 1.84 5.66 -83.62 -0.47 1.37 16 19 C -0.08 -0.88 8.70 -39.40 -0.34 -1.22 16 20 C -0.14 -1.45 10.02 -39.54 -0.40 -1.84 16 21 C 0.10 1.04 7.30 -39.39 -0.29 0.75 16 22 F -0.14 -1.54 17.27 2.25 0.04 -1.50 16 23 C -0.14 -1.45 10.02 -39.54 -0.40 -1.85 16 24 C -0.08 -0.86 9.72 -39.40 -0.38 -1.25 16 25 C 0.50 6.16 7.32 -10.96 -0.08 6.08 16 26 O -0.51 -7.35 15.68 5.59 0.09 -7.27 16 27 C -0.14 -1.25 6.20 -27.83 -0.17 -1.43 16 28 C -0.11 -1.14 5.86 -27.94 -0.16 -1.30 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 33 H 0.40 7.14 7.83 -40.82 -0.32 6.82 16 34 H 0.14 1.51 7.40 -52.48 -0.39 1.12 16 35 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.14 1.55 8.06 -52.48 -0.42 1.12 16 38 H 0.12 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.12 1.21 7.54 -51.93 -0.39 0.81 16 LS Contribution 358.43 15.07 5.40 5.40 Total: -1.00 -29.82 358.43 -7.04 -36.86 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -4.73 Total: 6.43 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -3.57 Total: 0.89 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: 0.67 Total: -44.78 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: 0.17 Total: -18.31 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.82 -7.04 -36.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646936945.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.871 kcal (2) G-P(sol) polarization free energy of solvation -29.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds