Wall clock time and date at job start Tue Mar 31 2020 18:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47430 * 2 1 4 4 C 1.50698 * 109.47116 * 239.99694 * 2 1 3 5 5 H 1.08000 * 120.00028 * 240.00703 * 4 2 1 6 6 C 1.37871 * 119.99925 * 60.00449 * 4 2 1 7 7 N 1.31513 * 120.00348 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99841 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46898 * 60.00368 * 8 6 4 10 10 H 1.48507 * 109.47071 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47191 * 299.99998 * 8 6 4 12 12 N 1.46504 * 109.46517 * 119.99869 * 2 1 3 13 13 C 1.34774 * 120.00207 * 274.99759 * 12 2 1 14 14 O 1.21669 * 120.00041 * 0.02562 * 13 12 2 15 15 C 1.46701 * 120.00183 * 180.02562 * 13 12 2 16 16 N 1.29758 * 119.55283 * 0.02562 * 15 13 12 17 17 N 1.39855 * 121.13426 * 180.08694 * 16 15 13 18 18 C 1.40067 * 119.79924 * 199.16669 * 17 16 15 19 19 C 1.38877 * 120.04869 * 131.48874 * 18 17 16 20 20 C 1.38088 * 119.95779 * 179.97438 * 19 18 17 21 21 C 1.38497 * 120.04268 * 0.25704 * 20 19 18 22 22 F 1.35101 * 119.95124 * 179.72033 * 21 20 19 23 23 C 1.38493 * 120.09021 * 359.49256 * 21 20 19 24 24 C 1.38094 * 120.04563 * 0.50232 * 23 21 20 25 25 C 1.34754 * 120.40374 * 19.43129 * 17 16 15 26 26 O 1.21245 * 120.11552 * 179.46445 * 25 17 16 27 27 C 1.50770 * 119.75921 * 359.22713 * 25 17 16 28 28 C 1.50547 * 119.55104 * 179.97438 * 15 13 12 29 29 H 1.08997 * 109.47219 * 300.00476 * 1 2 3 30 30 H 1.09006 * 109.46677 * 59.99854 * 1 2 3 31 31 H 1.08995 * 109.47815 * 179.97438 * 1 2 3 32 32 H 0.96996 * 120.00256 * 179.97438 * 7 6 4 33 33 H 0.97001 * 120.00008 * 94.99807 * 12 2 1 34 34 H 1.08003 * 120.02142 * 359.95984 * 19 18 17 35 35 H 1.07996 * 119.98094 * 179.97438 * 20 19 18 36 36 H 1.08002 * 119.97646 * 180.25680 * 23 21 20 37 37 H 1.08005 * 120.01942 * 179.76884 * 24 23 21 38 38 H 1.09001 * 109.60674 * 207.12917 * 27 25 17 39 39 H 1.08994 * 109.30356 * 87.04162 * 27 25 17 40 40 H 1.09004 * 109.45021 * 265.88467 * 28 15 13 41 41 H 1.09001 * 109.45049 * 25.80778 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4826 7 7 0.9429 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8280 -2.5199 -4.0080 10 1 1.8281 -0.4194 -5.2204 11 1 3.8076 -1.1192 -4.0076 12 7 2.0182 -0.6906 1.1963 13 6 2.1469 -0.0183 2.3572 14 8 1.8572 1.1621 2.4119 15 6 2.6363 -0.7097 3.5549 16 7 2.9433 -1.9686 3.4867 17 7 3.4111 -2.6607 4.6083 18 6 4.1041 -3.8666 4.4431 19 6 5.3067 -4.0741 5.1060 20 6 5.9881 -5.2639 4.9422 21 6 5.4756 -6.2480 4.1132 22 9 6.1467 -7.4091 3.9498 23 6 4.2740 -6.0451 3.4552 24 6 3.5894 -4.8567 3.6164 25 6 3.1946 -2.1771 5.8473 26 8 3.5941 -2.7863 6.8165 27 6 2.4586 -0.8732 6.0237 28 6 2.7767 0.0513 4.8463 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 0.7090 1.1612 -3.4844 33 1 2.2489 -1.6318 1.1528 34 1 5.7088 -3.3053 5.7492 35 1 6.9235 -5.4255 5.4572 36 1 3.8740 -6.8154 2.8124 37 1 2.6542 -4.6975 3.1002 38 1 2.7723 -0.3990 6.9537 39 1 1.3864 -1.0662 6.0561 40 1 3.7978 0.4211 4.9405 41 1 2.0845 0.8932 4.8486 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646936945.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:34 Heat of formation + Delta-G solvation = -58.526031 kcal Electronic energy + Delta-G solvation = -27889.718997 eV Core-core repulsion = 23684.578557 eV Total energy + Delta-G solvation = -4205.140440 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.95869 -42.35142 -40.79288 -39.65444 -38.39480 -36.80876 -35.24610 -34.43473 -32.80388 -32.29775 -30.96876 -30.20130 -27.31993 -26.89963 -25.43583 -24.30881 -23.69001 -22.74739 -21.57014 -20.20194 -19.27039 -18.72031 -18.49322 -18.21020 -17.68024 -17.24586 -17.15287 -16.67850 -16.63723 -16.18491 -15.99447 -15.64310 -15.27921 -15.06403 -14.68423 -14.55356 -14.42688 -14.33786 -14.00081 -13.88960 -13.70495 -13.51268 -13.28628 -13.00413 -12.83833 -12.71947 -12.67944 -12.25559 -12.19759 -12.15367 -12.03651 -11.24748 -11.10500 -10.94979 -10.58850 -10.51922 -10.22759 -9.84951 -9.34281 -8.16065 -6.32653 -0.28562 -0.16991 0.12392 0.82169 1.18939 1.47983 1.48727 1.56470 2.09361 2.14501 2.37941 2.48152 2.93508 3.15046 3.16360 3.39022 3.56913 3.66702 3.75448 3.80400 4.04373 4.07899 4.14900 4.29699 4.33044 4.69691 4.71796 4.79102 4.81699 4.95956 4.99238 5.01173 5.01833 5.10079 5.15084 5.21879 5.41536 5.56018 5.68470 5.74210 5.87691 6.10799 6.31232 6.60314 6.72208 6.83839 7.22916 7.41524 8.89755 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010397 B = 0.003498 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.433546 B = 8003.754547 C =10340.345392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.269 3.731 3 H 0.012 0.988 4 C -0.549 4.549 5 H 0.070 0.930 6 C 0.021 3.979 7 N -0.914 5.914 8 Si 0.966 3.034 9 H -0.266 1.266 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.681 5.681 13 C 0.561 3.439 14 O -0.564 6.564 15 C 0.104 3.896 16 N -0.217 5.217 17 N -0.412 5.412 18 C 0.121 3.879 19 C -0.083 4.083 20 C -0.136 4.136 21 C 0.089 3.911 22 F -0.140 7.140 23 C -0.137 4.137 24 C -0.083 4.083 25 C 0.494 3.506 26 O -0.531 6.531 27 C -0.128 4.128 28 C -0.105 4.105 29 H 0.021 0.979 30 H 0.069 0.931 31 H 0.039 0.961 32 H 0.266 0.734 33 H 0.408 0.592 34 H 0.136 0.864 35 H 0.163 0.837 36 H 0.163 0.837 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.125 0.875 40 H 0.117 0.883 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.024 -9.776 16.337 19.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.166 3.834 3 H 0.030 0.970 4 C -0.587 4.587 5 H 0.088 0.912 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.791 3.209 9 H -0.191 1.191 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.329 5.329 13 C 0.343 3.657 14 O -0.441 6.441 15 C -0.091 4.091 16 N -0.028 5.028 17 N -0.227 5.227 18 C 0.031 3.969 19 C -0.104 4.104 20 C -0.156 4.156 21 C 0.070 3.930 22 F -0.119 7.119 23 C -0.156 4.156 24 C -0.103 4.103 25 C 0.284 3.716 26 O -0.404 6.404 27 C -0.168 4.168 28 C -0.145 4.145 29 H 0.040 0.960 30 H 0.088 0.912 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.244 0.756 34 H 0.154 0.846 35 H 0.181 0.819 36 H 0.181 0.819 37 H 0.165 0.835 38 H 0.168 0.832 39 H 0.143 0.857 40 H 0.135 0.865 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.017 -9.959 16.279 20.010 hybrid contribution 0.305 -0.225 -0.563 0.679 sum 6.323 -10.184 15.717 19.766 Atomic orbital electron populations 1.21915 0.97699 0.99649 1.00184 1.18502 0.91491 0.92278 0.81081 0.97000 1.21475 1.32773 1.13640 0.90838 0.91192 1.25673 0.94806 0.95511 1.01961 1.70011 1.36732 1.23701 1.24726 0.85484 0.78623 0.78782 0.77984 1.19074 1.21112 1.19792 1.46354 1.62585 1.14555 1.09420 1.17625 0.79002 0.86209 0.82832 1.90818 1.52380 1.16038 1.84877 1.24978 0.96257 0.90386 0.97455 1.74828 1.08885 1.08623 1.10442 1.46362 1.53066 1.20232 1.02993 1.17704 0.92622 0.84871 1.01737 1.20969 0.91861 0.98259 0.99296 1.21170 1.02255 0.92321 0.99809 1.17888 0.92609 0.82961 0.99576 1.91505 1.79708 1.46340 1.94329 1.21258 0.94111 0.98851 1.01390 1.21101 1.00529 0.90940 0.97761 1.22093 0.79423 0.88505 0.81533 1.90740 1.50347 1.60832 1.38451 1.21965 1.03049 0.89821 1.01931 1.21048 1.06984 0.99388 0.87032 0.96007 0.91206 0.94237 0.92453 0.75586 0.84568 0.81910 0.81905 0.83476 0.83235 0.85692 0.86548 0.85409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.42 9.26 71.98 0.67 -5.76 16 2 C 0.27 13.12 2.56 44.24 0.11 13.23 16 3 H 0.01 0.69 7.58 -2.39 -0.02 0.67 16 4 C -0.55 -27.95 8.73 25.60 0.22 -27.73 16 5 H 0.07 3.38 7.74 -2.91 -0.02 3.35 16 6 C 0.02 1.09 5.30 84.65 0.45 1.54 16 7 N -0.91 -50.25 11.32 21.44 0.24 -50.00 16 8 Si 0.97 40.83 29.54 68.60 2.03 42.86 16 9 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 10 H -0.29 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 12 N -0.68 -26.73 5.05 -450.07 -2.27 -29.00 16 13 C 0.56 20.11 7.74 86.45 0.67 20.78 16 14 O -0.56 -23.66 15.90 -4.25 -0.07 -23.73 16 15 C 0.10 2.74 6.78 45.03 0.31 3.04 16 16 N -0.22 -5.69 10.28 -43.49 -0.45 -6.14 16 17 N -0.41 -10.15 3.58 -303.39 -1.08 -11.24 16 18 C 0.12 2.93 5.66 38.13 0.22 3.14 16 19 C -0.08 -1.83 8.70 22.39 0.19 -1.63 16 20 C -0.14 -2.57 10.02 22.30 0.22 -2.35 16 21 C 0.09 1.78 7.30 22.39 0.16 1.94 16 22 F -0.14 -2.87 17.27 44.97 0.78 -2.10 16 23 C -0.14 -2.61 10.02 22.30 0.22 -2.38 16 24 C -0.08 -1.81 9.72 22.39 0.22 -1.59 16 25 C 0.49 11.31 7.32 87.68 0.64 11.95 16 26 O -0.53 -14.55 15.68 -2.92 -0.05 -14.60 16 27 C -0.13 -1.96 6.20 29.88 0.19 -1.78 16 28 C -0.10 -1.93 5.86 29.81 0.17 -1.75 16 29 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 3.65 6.07 -2.38 -0.01 3.63 16 31 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 33 H 0.41 14.46 7.83 -92.71 -0.73 13.73 16 34 H 0.14 2.90 7.40 -2.91 -0.02 2.88 16 35 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 36 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 37 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 38 H 0.15 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.12 1.85 8.14 -2.38 -0.02 1.83 16 41 H 0.13 2.26 7.54 -2.39 -0.02 2.25 16 Total: -1.00 -64.59 358.43 4.15 -60.44 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: 0.36 Total: 22.85 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 4.67 Total: 10.66 kcal Atomic # 7 Polarization: -92.82 SS G_CDS: -3.56 Total: -96.38 kcal Atomic # 8 Polarization: -38.21 SS G_CDS: -0.11 Total: -38.32 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.78 Total: -2.10 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Total: -64.59 4.15 -60.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646936945.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.910 kcal (2) G-P(sol) polarization free energy of solvation -64.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds