Wall clock time and date at job start Tue Mar 31 2020 17:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.46944 * 2 1 4 4 C 1.35367 * 126.38565 * 85.32351 * 3 2 1 5 5 C 1.41506 * 105.50825 * 180.08559 * 4 3 2 6 6 C 1.47684 * 126.52352 * 179.90181 * 5 4 3 7 7 O 1.21589 * 119.99903 * 359.71393 * 6 5 4 8 8 N 1.34778 * 120.00097 * 179.70731 * 6 5 4 9 9 C 1.40012 * 119.99932 * 184.37469 * 8 6 5 10 10 C 1.38721 * 120.08363 * 325.39917 * 9 8 6 11 11 C 1.38185 * 120.02334 * 180.27557 * 10 9 8 12 12 C 1.38561 * 120.17350 * 359.48574 * 11 10 9 13 13 F 1.35098 * 119.91642 * 180.27892 * 12 11 10 14 14 C 1.38337 * 120.15733 * 0.51302 * 12 11 10 15 15 C 1.38741 * 119.98263 * 359.74750 * 14 12 11 16 16 O 1.35774 * 120.09021 * 180.02562 * 15 14 12 17 17 C 1.34803 * 116.99915 * 5.42269 * 16 15 14 18 18 H 1.07995 * 120.00099 * 354.95642 * 17 16 15 19 19 C 1.38643 * 119.99769 * 174.95917 * 17 16 15 20 20 N 1.31571 * 119.99681 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99976 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47339 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47431 * 119.99904 * 21 19 17 24 24 H 1.48502 * 109.46923 * 239.99909 * 21 19 17 25 25 N 1.31826 * 106.95784 * 359.63949 * 5 4 3 26 26 N 1.28470 * 110.06790 * 0.22803 * 25 5 4 27 27 C 1.46498 * 124.87993 * 180.02562 * 26 25 5 28 28 H 1.09000 * 109.47386 * 59.99419 * 1 2 3 29 29 H 1.08994 * 109.46831 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47066 * 299.99648 * 1 2 3 31 31 H 1.08999 * 109.47066 * 240.00352 * 2 1 3 32 32 H 1.08995 * 109.47260 * 119.99673 * 2 1 3 33 33 H 1.08004 * 127.24785 * 359.95089 * 4 3 2 34 34 H 0.97009 * 119.99884 * 4.38377 * 8 6 5 35 35 H 1.08002 * 119.98894 * 359.97438 * 10 9 8 36 36 H 1.08002 * 119.90962 * 179.72126 * 11 10 9 37 37 H 1.08005 * 120.01073 * 179.76437 * 14 12 11 38 38 H 0.97001 * 119.99149 * 180.02562 * 20 19 17 39 39 H 1.08996 * 109.47747 * 89.96986 * 27 26 25 40 40 H 1.08998 * 109.47481 * 209.97589 * 27 26 25 41 41 H 1.09009 * 109.47063 * 329.97254 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2162 2.2075 1.0861 5 6 2.6937 3.4411 0.5834 6 6 3.0446 4.6367 1.3761 7 8 2.9272 4.6197 2.5862 8 7 3.4951 5.7466 0.7583 9 6 3.9143 6.8476 1.5148 10 6 3.2780 7.1537 2.7089 11 6 3.6890 8.2440 3.4517 12 6 4.7436 9.0282 3.0126 13 9 5.1448 10.0897 3.7458 14 6 5.3834 8.7297 1.8230 15 6 4.9726 7.6397 1.0693 16 8 5.5993 7.3444 -0.0984 17 6 6.6839 8.0801 -0.4138 18 1 6.9697 8.9151 0.2086 19 6 7.4326 7.7647 -1.5373 20 7 7.0846 6.7471 -2.2953 21 14 8.9360 8.7837 -1.9741 22 1 9.1117 9.8628 -0.9691 23 1 10.1389 7.9131 -1.9817 24 1 8.7522 9.3857 -3.3191 25 7 2.7712 3.3181 -0.7269 26 7 2.3886 2.1445 -1.0829 27 6 2.3456 1.6608 -2.4650 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.0344 1.9490 2.1189 34 1 3.5287 5.7826 -0.2105 35 1 2.4579 6.5424 3.0557 36 1 3.1894 8.4832 4.3789 37 1 6.2027 9.3448 1.4811 38 1 7.6086 6.5263 -3.0811 39 1 3.3000 1.1994 -2.7185 40 1 1.5478 0.9253 -2.5679 41 1 2.1568 2.4979 -3.1373 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649745031.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:57 Heat of formation + Delta-G solvation = -2.493972 kcal Electronic energy + Delta-G solvation = -27742.523059 eV Core-core repulsion = 23539.812352 eV Total energy + Delta-G solvation = -4202.710707 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -48.22009 -42.66186 -39.88877 -38.39120 -36.25971 -34.61589 -33.95378 -33.37835 -32.37298 -29.58529 -29.36923 -28.62321 -27.13720 -25.47436 -23.96230 -23.42650 -22.15595 -21.31742 -20.76053 -19.25172 -18.30554 -17.86963 -17.13292 -16.45457 -16.39102 -16.31000 -15.27744 -15.20667 -14.91777 -14.80371 -14.46077 -14.27177 -14.09363 -13.89286 -13.60503 -13.52767 -13.43974 -13.19248 -12.96510 -12.71483 -12.55186 -12.27668 -12.12123 -11.86336 -11.63485 -11.43871 -11.33618 -10.95761 -10.69564 -10.67299 -10.48943 -9.81844 -9.71064 -9.36997 -9.06133 -8.93274 -8.91603 -7.85402 -7.07121 -6.55836 -4.13893 1.59684 1.94473 2.15860 2.22360 2.45467 3.07857 3.10195 3.15555 3.52868 3.73259 3.87858 4.30079 4.37179 4.40240 4.66215 4.86472 4.89234 4.93390 4.99057 5.00906 5.16515 5.17336 5.24315 5.32292 5.47592 5.57728 5.65920 5.69116 5.78634 5.85410 5.96282 6.07999 6.27035 6.44849 6.59218 6.75495 6.81067 6.95044 6.97991 7.09163 7.23637 7.67424 7.83495 7.88671 8.11197 8.59828 8.89217 9.51126 10.60787 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010375 B = 0.003619 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.086824 B = 7735.005595 C =10231.097883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.052 4.052 3 C 0.006 3.994 4 C -0.175 4.175 5 C -0.010 4.010 6 C 0.601 3.399 7 O -0.531 6.531 8 N -0.635 5.635 9 C 0.058 3.942 10 C -0.049 4.049 11 C -0.230 4.230 12 C 0.131 3.869 13 F -0.151 7.151 14 C -0.260 4.260 15 C 0.161 3.839 16 O -0.166 6.166 17 C -0.393 4.393 18 H 0.095 0.905 19 C 0.043 3.957 20 N -0.855 5.855 21 Si 0.942 3.058 22 H -0.265 1.265 23 H -0.275 1.275 24 H -0.275 1.275 25 N -0.250 5.250 26 N -0.280 5.280 27 C 0.085 3.915 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.161 0.839 34 H 0.420 0.580 35 H 0.142 0.858 36 H 0.123 0.877 37 H 0.143 0.857 38 H 0.271 0.729 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.035 -12.027 -0.049 16.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.091 4.091 3 C -0.118 4.118 4 C -0.203 4.203 5 C -0.170 4.170 6 C 0.387 3.613 7 O -0.406 6.406 8 N -0.278 5.278 9 C -0.036 4.036 10 C -0.070 4.070 11 C -0.250 4.250 12 C 0.111 3.889 13 F -0.130 7.130 14 C -0.281 4.281 15 C 0.105 3.895 16 O -0.069 6.069 17 C -0.468 4.468 18 H 0.113 0.887 19 C -0.162 4.162 20 N -0.489 5.489 21 Si 0.767 3.233 22 H -0.189 1.189 23 H -0.201 1.201 24 H -0.200 1.200 25 N -0.085 5.085 26 N -0.069 5.069 27 C -0.056 4.056 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.178 0.822 34 H 0.258 0.742 35 H 0.160 0.840 36 H 0.141 0.859 37 H 0.161 0.839 38 H 0.080 0.920 39 H 0.104 0.896 40 H 0.111 0.889 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.748 -11.774 -0.709 15.958 hybrid contribution 0.860 0.326 -0.014 0.920 sum -9.888 -11.448 -0.723 15.144 Atomic orbital electron populations 1.21772 0.94145 1.02020 1.02662 1.20081 0.96306 0.88875 1.03805 1.21350 1.06567 0.96934 0.86961 1.21450 1.07019 0.92322 0.99513 1.21798 1.08575 0.96737 0.89885 1.16879 0.77386 0.80796 0.86276 1.90735 1.54036 1.82794 1.13053 1.42956 1.61701 1.12151 1.11016 1.16874 0.98682 0.91707 0.96345 1.20666 0.98463 0.95117 0.92718 1.20474 1.01641 0.99438 1.03447 1.17463 0.95623 0.85345 0.90436 1.91409 1.90225 1.54695 1.76686 1.20843 1.07197 1.02854 0.97181 1.18800 0.90806 0.92548 0.87394 1.83940 1.38873 1.54541 1.29505 1.21406 1.02568 1.11798 1.11061 0.88732 1.25299 0.98811 0.96904 0.95236 1.70053 1.38564 1.25676 1.14644 0.85621 0.79730 0.79090 0.78895 1.18930 1.20066 1.20047 1.73685 1.17267 1.02577 1.15011 1.45325 1.45445 1.08300 1.07805 1.22157 1.04083 1.01602 0.77736 0.92802 0.91863 0.91836 0.90792 0.89164 0.82170 0.74239 0.83991 0.85865 0.83929 0.91952 0.89618 0.88917 0.88252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 37.16 0.37 -0.56 16 2 C -0.05 -0.37 6.00 -27.88 -0.17 -0.54 16 3 C 0.01 0.07 6.17 -82.21 -0.51 -0.44 16 4 C -0.18 -2.52 10.73 -39.36 -0.42 -2.94 16 5 C -0.01 -0.17 7.13 -82.77 -0.59 -0.76 16 6 C 0.60 11.94 7.67 -12.40 -0.10 11.85 16 7 O -0.53 -11.21 14.34 5.29 0.08 -11.13 16 8 N -0.63 -13.21 5.19 -10.61 -0.06 -13.27 16 9 C 0.06 1.28 6.33 -83.47 -0.53 0.75 16 10 C -0.05 -0.99 8.69 -39.42 -0.34 -1.33 16 11 C -0.23 -4.39 10.02 -39.48 -0.40 -4.79 16 12 C 0.13 2.69 7.29 -39.43 -0.29 2.40 16 13 F -0.15 -2.96 17.26 2.25 0.04 -2.92 16 14 C -0.26 -5.84 9.14 -39.36 -0.36 -6.20 16 15 C 0.16 3.87 6.67 -38.93 -0.26 3.61 16 16 O -0.17 -4.52 9.31 0.05 0.00 -4.52 16 17 C -0.39 -10.64 9.49 30.88 0.29 -10.34 16 18 H 0.10 2.41 5.20 -52.49 -0.27 2.13 16 19 C 0.04 1.14 5.49 -17.51 -0.10 1.04 16 20 N -0.86 -24.04 13.67 55.48 0.76 -23.28 16 21 Si 0.94 20.12 29.55 -169.99 -5.02 15.09 16 22 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 23 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 25 N -0.25 -4.18 11.68 33.42 0.39 -3.79 16 26 N -0.28 -3.57 3.70 -63.85 -0.24 -3.81 16 27 C 0.08 0.67 10.89 59.85 0.65 1.32 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.41 7.42 -51.93 -0.39 0.02 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.16 2.07 8.06 -52.48 -0.42 1.65 16 34 H 0.42 8.78 8.30 -40.82 -0.34 8.45 16 35 H 0.14 2.73 6.19 -52.49 -0.32 2.41 16 36 H 0.12 2.02 8.06 -52.49 -0.42 1.59 16 37 H 0.14 3.19 5.64 -52.48 -0.30 2.89 16 38 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.43 7.45 -51.93 -0.39 0.05 16 41 H 0.10 0.77 8.14 -51.92 -0.42 0.34 16 LS Contribution 361.10 15.07 5.44 5.44 Total: -1.00 -32.72 361.10 -5.87 -38.59 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -4.52 Total: 10.52 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -2.74 Total: -6.94 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: 0.86 Total: -44.14 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: 0.08 Total: -15.65 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.04 Total: -2.92 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.72 -5.87 -38.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649745031.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.094 kcal (2) G-P(sol) polarization free energy of solvation -32.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds