Wall clock time and date at job start Tue Mar 31 2020 17:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.46944 * 2 1 4 4 C 1.35367 * 126.38565 * 85.32351 * 3 2 1 5 5 C 1.41506 * 105.50825 * 180.08559 * 4 3 2 6 6 C 1.47684 * 126.52352 * 179.90181 * 5 4 3 7 7 O 1.21589 * 119.99903 * 359.71393 * 6 5 4 8 8 N 1.34778 * 120.00097 * 179.70731 * 6 5 4 9 9 C 1.40012 * 119.99932 * 184.37469 * 8 6 5 10 10 C 1.38721 * 120.08363 * 325.39917 * 9 8 6 11 11 C 1.38185 * 120.02334 * 180.27557 * 10 9 8 12 12 C 1.38561 * 120.17350 * 359.48574 * 11 10 9 13 13 F 1.35098 * 119.91642 * 180.27892 * 12 11 10 14 14 C 1.38337 * 120.15733 * 0.51302 * 12 11 10 15 15 C 1.38741 * 119.98263 * 359.74750 * 14 12 11 16 16 O 1.35774 * 120.09021 * 180.02562 * 15 14 12 17 17 C 1.34803 * 116.99915 * 5.42269 * 16 15 14 18 18 H 1.07995 * 120.00099 * 354.95642 * 17 16 15 19 19 C 1.38643 * 119.99769 * 174.95917 * 17 16 15 20 20 N 1.31571 * 119.99681 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99976 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47339 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47431 * 119.99904 * 21 19 17 24 24 H 1.48502 * 109.46923 * 239.99909 * 21 19 17 25 25 N 1.31826 * 106.95784 * 359.63949 * 5 4 3 26 26 N 1.28470 * 110.06790 * 0.22803 * 25 5 4 27 27 C 1.46498 * 124.87993 * 180.02562 * 26 25 5 28 28 H 1.09000 * 109.47386 * 59.99419 * 1 2 3 29 29 H 1.08994 * 109.46831 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47066 * 299.99648 * 1 2 3 31 31 H 1.08999 * 109.47066 * 240.00352 * 2 1 3 32 32 H 1.08995 * 109.47260 * 119.99673 * 2 1 3 33 33 H 1.08004 * 127.24785 * 359.95089 * 4 3 2 34 34 H 0.97009 * 119.99884 * 4.38377 * 8 6 5 35 35 H 1.08002 * 119.98894 * 359.97438 * 10 9 8 36 36 H 1.08002 * 119.90962 * 179.72126 * 11 10 9 37 37 H 1.08005 * 120.01073 * 179.76437 * 14 12 11 38 38 H 0.97001 * 119.99149 * 180.02562 * 20 19 17 39 39 H 1.08996 * 109.47747 * 89.96986 * 27 26 25 40 40 H 1.08998 * 109.47481 * 209.97589 * 27 26 25 41 41 H 1.09009 * 109.47063 * 329.97254 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2162 2.2075 1.0861 5 6 2.6937 3.4411 0.5834 6 6 3.0446 4.6367 1.3761 7 8 2.9272 4.6197 2.5862 8 7 3.4951 5.7466 0.7583 9 6 3.9143 6.8476 1.5148 10 6 3.2780 7.1537 2.7089 11 6 3.6890 8.2440 3.4517 12 6 4.7436 9.0282 3.0126 13 9 5.1448 10.0897 3.7458 14 6 5.3834 8.7297 1.8230 15 6 4.9726 7.6397 1.0693 16 8 5.5993 7.3444 -0.0984 17 6 6.6839 8.0801 -0.4138 18 1 6.9697 8.9151 0.2086 19 6 7.4326 7.7647 -1.5373 20 7 7.0846 6.7471 -2.2953 21 14 8.9360 8.7837 -1.9741 22 1 9.1117 9.8628 -0.9691 23 1 10.1389 7.9131 -1.9817 24 1 8.7522 9.3857 -3.3191 25 7 2.7712 3.3181 -0.7269 26 7 2.3886 2.1445 -1.0829 27 6 2.3456 1.6608 -2.4650 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.0344 1.9490 2.1189 34 1 3.5287 5.7826 -0.2105 35 1 2.4579 6.5424 3.0557 36 1 3.1894 8.4832 4.3789 37 1 6.2027 9.3448 1.4811 38 1 7.6086 6.5263 -3.0811 39 1 3.3000 1.1994 -2.7185 40 1 1.5478 0.9253 -2.5679 41 1 2.1568 2.4979 -3.1373 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649745031.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:54 Heat of formation + Delta-G solvation = -23.510588 kcal Electronic energy + Delta-G solvation = -27743.434408 eV Core-core repulsion = 23539.812352 eV Total energy + Delta-G solvation = -4203.622056 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.85178 -43.74363 -41.57453 -40.11857 -38.03327 -35.72298 -35.23837 -34.33972 -34.33417 -31.19771 -30.53218 -30.06110 -28.25653 -27.40273 -24.98588 -24.44117 -23.84935 -22.89310 -21.91787 -20.61212 -20.17307 -19.54535 -18.51541 -17.94897 -17.59718 -17.38934 -17.03420 -16.88491 -16.55228 -16.02078 -15.88561 -15.63201 -15.43158 -15.35317 -15.25408 -15.02963 -14.68479 -14.22370 -14.06745 -13.83684 -13.70327 -13.46207 -13.43274 -13.24728 -13.04257 -12.63398 -12.47516 -12.36517 -12.13034 -12.03384 -11.70386 -11.68741 -11.35526 -11.04567 -10.85330 -10.16582 -9.95460 -9.60360 -8.82212 -8.52360 -6.19666 0.03373 0.42433 0.57646 1.09886 1.34999 1.41764 1.52165 1.53776 2.03651 2.13523 2.25570 2.65406 2.99146 3.16926 3.27463 3.42259 3.60397 3.82736 3.93166 4.13652 4.17340 4.32136 4.32235 4.43029 4.44182 4.51081 4.59768 4.63665 4.71034 4.80962 4.90189 4.99131 5.08817 5.18625 5.19512 5.26299 5.31712 5.32514 5.41076 5.48174 5.87427 5.90961 5.99461 6.32403 6.83177 6.91022 7.03852 7.60353 8.68521 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010375 B = 0.003619 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.086824 B = 7735.005595 C =10231.097883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.049 4.049 3 C 0.027 3.973 4 C -0.194 4.194 5 C -0.044 4.044 6 C 0.600 3.400 7 O -0.549 6.549 8 N -0.641 5.641 9 C 0.053 3.947 10 C -0.049 4.049 11 C -0.202 4.202 12 C 0.129 3.871 13 F -0.142 7.142 14 C -0.264 4.264 15 C 0.134 3.866 16 O -0.204 6.204 17 C -0.418 4.418 18 H 0.102 0.898 19 C -0.011 4.011 20 N -0.905 5.905 21 Si 1.015 2.985 22 H -0.255 1.255 23 H -0.269 1.269 24 H -0.266 1.266 25 N -0.283 5.283 26 N -0.274 5.274 27 C 0.071 3.929 28 H 0.052 0.948 29 H 0.086 0.914 30 H 0.050 0.950 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.169 0.831 34 H 0.416 0.584 35 H 0.155 0.845 36 H 0.163 0.837 37 H 0.138 0.862 38 H 0.274 0.726 39 H 0.098 0.902 40 H 0.133 0.867 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.906 -13.263 0.476 17.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.088 4.088 3 C -0.098 4.098 4 C -0.222 4.222 5 C -0.202 4.202 6 C 0.388 3.612 7 O -0.426 6.426 8 N -0.283 5.283 9 C -0.041 4.041 10 C -0.069 4.069 11 C -0.221 4.221 12 C 0.109 3.891 13 F -0.120 7.120 14 C -0.285 4.285 15 C 0.080 3.920 16 O -0.109 6.109 17 C -0.493 4.493 18 H 0.119 0.881 19 C -0.211 4.211 20 N -0.542 5.542 21 Si 0.835 3.165 22 H -0.178 1.178 23 H -0.194 1.194 24 H -0.190 1.190 25 N -0.121 5.121 26 N -0.063 5.063 27 C -0.068 4.068 28 H 0.072 0.928 29 H 0.105 0.895 30 H 0.069 0.931 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.186 0.814 34 H 0.253 0.747 35 H 0.172 0.828 36 H 0.181 0.819 37 H 0.156 0.844 38 H 0.083 0.917 39 H 0.117 0.883 40 H 0.151 0.849 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.650 -13.001 -0.152 17.458 hybrid contribution 0.928 0.617 -0.043 1.115 sum -10.722 -12.384 -0.195 16.382 Atomic orbital electron populations 1.21759 0.93141 1.03358 1.02069 1.20314 0.96939 0.85804 1.05757 1.22013 1.03932 0.98278 0.85601 1.21684 1.07945 0.91701 1.00916 1.21614 1.11092 0.96890 0.90574 1.17263 0.76441 0.81078 0.86398 1.90685 1.54923 1.83232 1.13729 1.43049 1.62032 1.12483 1.10783 1.17216 0.98180 0.91803 0.96951 1.20883 0.98566 0.95534 0.91950 1.20890 0.99937 0.97445 1.03865 1.17436 0.95886 0.85875 0.89923 1.91435 1.90176 1.54216 1.76219 1.20919 1.07237 1.02411 0.97887 1.19169 0.91566 0.93767 0.87501 1.83926 1.39889 1.55846 1.31286 1.21844 1.03216 1.12424 1.11843 0.88087 1.26480 1.01774 0.98081 0.94744 1.70177 1.40464 1.27919 1.15627 0.84570 0.75409 0.77559 0.78972 1.17808 1.19439 1.19047 1.73616 1.18679 1.04934 1.14823 1.45827 1.43498 1.07220 1.09757 1.22632 1.06386 1.02500 0.75250 0.92844 0.89536 0.93079 0.88125 0.87955 0.81394 0.74734 0.82801 0.81945 0.84399 0.91655 0.88347 0.84871 0.88443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.89 71.98 0.71 -0.65 16 2 C -0.05 -0.55 6.00 29.85 0.18 -0.37 16 3 C 0.03 0.58 6.17 41.40 0.26 0.84 16 4 C -0.19 -5.58 10.73 22.41 0.24 -5.34 16 5 C -0.04 -1.59 7.13 42.45 0.30 -1.29 16 6 C 0.60 24.84 7.67 86.74 0.67 25.50 16 7 O -0.55 -23.64 14.34 -4.00 -0.06 -23.70 16 8 N -0.64 -28.07 5.19 -305.76 -1.59 -29.66 16 9 C 0.05 2.40 6.33 38.25 0.24 2.65 16 10 C -0.05 -1.94 8.69 22.37 0.19 -1.74 16 11 C -0.20 -7.25 10.02 22.33 0.22 -7.02 16 12 C 0.13 5.11 7.29 22.37 0.16 5.28 16 13 F -0.14 -5.25 17.26 44.97 0.78 -4.47 16 14 C -0.26 -12.04 9.14 22.41 0.20 -11.84 16 15 C 0.13 6.69 6.67 22.69 0.15 6.84 16 16 O -0.20 -11.77 9.31 -22.73 -0.21 -11.98 16 17 C -0.42 -23.64 9.49 67.92 0.64 -22.99 16 18 H 0.10 5.34 5.20 -2.91 -0.02 5.32 16 19 C -0.01 -0.62 5.49 84.83 0.47 -0.15 16 20 N -0.91 -53.12 13.67 21.61 0.30 -52.83 16 21 Si 1.02 42.00 29.55 68.60 2.03 44.02 16 22 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 23 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 24 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 25 N -0.28 -9.74 11.68 -48.18 -0.56 -10.30 16 26 N -0.27 -6.74 3.70 -355.93 -1.32 -8.06 16 27 C 0.07 0.97 10.89 127.77 1.39 2.36 16 28 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.10 0.64 7.42 -2.39 -0.02 0.62 16 32 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.17 4.34 8.06 -2.91 -0.02 4.31 16 34 H 0.42 18.76 8.30 -92.70 -0.77 17.99 16 35 H 0.15 5.77 6.19 -2.91 -0.02 5.75 16 36 H 0.16 4.62 8.06 -2.91 -0.02 4.59 16 37 H 0.14 6.33 5.64 -2.91 -0.02 6.32 16 38 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 39 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.13 0.73 7.45 -2.39 -0.02 0.72 16 41 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 Total: -1.00 -75.09 361.10 5.73 -69.36 By element: Atomic # 1 Polarization: 35.20 SS G_CDS: 0.33 Total: 35.54 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: 6.04 Total: -7.92 kcal Atomic # 7 Polarization: -97.67 SS G_CDS: -3.17 Total: -100.84 kcal Atomic # 8 Polarization: -35.41 SS G_CDS: -0.27 Total: -35.68 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.78 Total: -4.47 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Total: -75.09 5.73 -69.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649745031.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.845 kcal (2) G-P(sol) polarization free energy of solvation -75.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds