Wall clock time and date at job start Tue Mar 31 2020 18:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47394 * 2 1 4 4 C 1.46506 * 120.00194 * 274.53355 * 3 2 1 5 5 C 1.50705 * 109.46709 * 280.85451 * 4 3 2 6 6 H 1.07994 * 120.00576 * 358.38290 * 5 4 3 7 7 C 1.37882 * 119.99346 * 178.38015 * 5 4 3 8 8 N 1.31510 * 120.00326 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99586 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47575 * 59.99679 * 9 7 5 11 11 H 1.48495 * 109.47273 * 180.02562 * 9 7 5 12 12 H 1.48509 * 109.46954 * 300.00049 * 9 7 5 13 13 S 1.65596 * 120.00044 * 94.53320 * 3 2 1 14 14 O 1.42100 * 106.40092 * 336.66224 * 13 3 2 15 15 O 1.42098 * 106.40475 * 203.74216 * 13 3 2 16 16 N 1.65597 * 107.22251 * 90.20289 * 13 3 2 17 17 C 1.46503 * 120.00062 * 65.73238 * 16 13 3 18 18 C 1.50703 * 109.47033 * 163.18460 * 17 16 13 19 19 N 1.30828 * 125.95819 * 275.02730 * 18 17 16 20 20 C 1.33240 * 109.82614 * 180.02562 * 19 18 17 21 21 C 1.50700 * 125.52903 * 179.97438 * 20 19 18 22 22 O 1.42908 * 109.47132 * 89.99792 * 21 20 19 23 23 C 1.42896 * 114.00108 * 180.02562 * 22 21 20 24 24 N 1.30716 * 108.94849 * 359.97438 * 20 19 18 25 25 N 1.34427 * 125.96185 * 94.71713 * 18 17 16 26 26 H 0.97005 * 126.82024 * 0.02562 * 25 18 17 27 27 H 1.09006 * 109.46853 * 65.04787 * 1 2 3 28 28 H 1.09003 * 109.46983 * 185.04499 * 1 2 3 29 29 H 1.08997 * 109.47034 * 305.04844 * 1 2 3 30 30 H 1.09003 * 109.47018 * 240.00221 * 2 1 3 31 31 H 1.08995 * 109.47331 * 120.00515 * 2 1 3 32 32 H 1.09000 * 109.46976 * 40.85411 * 4 3 2 33 33 H 1.08996 * 109.47532 * 160.85833 * 4 3 2 34 34 H 0.96996 * 119.99765 * 179.97438 * 8 7 5 35 35 H 0.97004 * 120.00099 * 245.74023 * 16 13 3 36 36 H 1.08995 * 109.46939 * 283.18733 * 17 16 13 37 37 H 1.08994 * 109.47017 * 43.18437 * 17 16 13 38 38 H 1.08996 * 109.47713 * 209.99719 * 21 20 19 39 39 H 1.09000 * 109.47214 * 330.00387 * 21 20 19 40 40 H 1.08998 * 109.47212 * 180.02562 * 23 22 21 41 41 H 1.09004 * 109.46843 * 299.99928 * 23 22 21 42 42 H 1.08999 * 109.47531 * 60.00042 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1680 2.1053 -1.2648 5 6 3.4437 1.6748 -1.9421 6 1 4.0923 0.9552 -1.4648 7 6 3.7825 2.1996 -3.1712 8 7 2.9924 3.0754 -3.7527 9 14 5.3633 1.6656 -4.0111 10 1 5.3292 0.1994 -4.2441 11 1 5.4959 2.3709 -5.3111 12 1 6.5220 2.0023 -3.1453 13 16 2.4013 2.1240 1.4296 14 8 1.6718 1.4450 2.4426 15 8 2.2920 3.5216 1.1975 16 7 4.0026 1.8229 1.7251 17 6 5.0280 2.3764 0.8371 18 6 6.3690 2.3214 1.5227 19 7 6.8453 3.2147 2.3514 20 6 8.0569 2.8462 2.7656 21 6 8.9260 3.6167 3.7259 22 8 8.6458 3.1979 5.0632 23 6 9.4204 3.8712 6.0574 24 7 8.3695 1.7080 2.2041 25 7 7.2819 1.3432 1.3938 26 1 7.2058 0.5453 0.8474 27 1 -0.3633 0.4336 -0.9318 28 1 -0.3633 -1.0237 0.0904 29 1 -0.3633 0.5901 0.8413 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.3200 1.8838 -1.9128 33 1 2.2049 3.1767 -1.0680 34 1 3.2310 3.4449 -4.6172 35 1 4.2617 1.2800 2.4861 36 1 5.0658 1.7926 -0.0825 37 1 4.7832 3.4118 0.6004 38 1 9.9750 3.4278 3.4983 39 1 8.7192 4.6824 3.6281 40 1 9.1491 3.4968 7.0445 41 1 10.4799 3.6878 5.8783 42 1 9.2236 4.9421 6.0079 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649876042.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:28 Heat of formation + Delta-G solvation = -33.521655 kcal Electronic energy + Delta-G solvation = -27379.648251 eV Core-core repulsion = 23330.955995 eV Total energy + Delta-G solvation = -4048.692256 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.24497 -38.04632 -36.76533 -36.14506 -35.34210 -35.26927 -32.87351 -32.82741 -31.45861 -30.00731 -28.40322 -26.80628 -26.29503 -25.85842 -23.24816 -21.82006 -21.55195 -20.66690 -19.02715 -18.17187 -17.25505 -16.91264 -16.83288 -16.63240 -16.08672 -15.77634 -15.62516 -15.32646 -14.99198 -14.52990 -13.98098 -13.61306 -13.56853 -13.31870 -12.96672 -12.81626 -12.59008 -12.13082 -12.11609 -12.04250 -11.77671 -11.73461 -11.57375 -11.49816 -11.38996 -11.14871 -11.07363 -10.58569 -10.49041 -10.22336 -10.15586 -10.13148 -9.95875 -9.94766 -9.71286 -9.28302 -8.62740 -8.17038 -6.23799 -4.32265 1.05919 1.49139 2.44684 2.60347 3.13232 3.19578 3.22932 3.49982 3.57160 4.05361 4.13651 4.22479 4.47269 4.67033 4.98163 4.98935 5.08185 5.09878 5.13311 5.27011 5.36271 5.41730 5.57827 5.69938 5.74723 5.80930 5.98344 6.09792 6.11574 6.24738 6.29445 6.61718 6.64885 6.81712 6.94157 7.07570 7.27967 7.35389 7.55827 7.72385 7.99965 8.02055 8.71236 9.33794 10.83778 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010978 B = 0.004163 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.035296 B = 6724.983717 C = 8510.093292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.131 3.869 3 N -0.991 5.991 4 C 0.242 3.758 5 C -0.548 4.548 6 H 0.063 0.937 7 C 0.069 3.931 8 N -0.882 5.882 9 Si 0.889 3.111 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 S 2.787 3.213 14 O -0.993 6.993 15 O -0.973 6.973 16 N -1.126 6.126 17 C 0.195 3.805 18 C 0.290 3.710 19 N -0.513 5.513 20 C 0.221 3.779 21 C 0.160 3.840 22 O -0.385 6.385 23 C 0.034 3.966 24 N -0.295 5.295 25 N -0.468 5.468 26 H 0.445 0.555 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.040 0.960 33 H 0.054 0.946 34 H 0.267 0.733 35 H 0.410 0.590 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.043 0.957 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.370 -3.185 10.822 14.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.004 3.996 3 N -0.833 5.833 4 C 0.119 3.881 5 C -0.587 4.587 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.717 3.283 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.202 1.202 13 S 2.795 3.205 14 O -0.977 6.977 15 O -0.956 6.956 16 N -0.884 5.884 17 C 0.067 3.933 18 C 0.010 3.990 19 N -0.242 5.242 20 C -0.062 4.062 21 C 0.081 3.919 22 O -0.302 6.302 23 C -0.063 4.063 24 N -0.127 5.127 25 N -0.188 5.188 26 H 0.291 0.709 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.242 0.758 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.062 0.938 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.091 -2.563 11.339 14.164 hybrid contribution 1.349 -1.137 -1.086 2.071 sum 9.440 -3.700 10.253 14.420 Atomic orbital electron populations 1.22195 0.96879 1.01371 1.02415 1.20981 0.93734 0.82693 1.02177 1.57750 1.78368 1.23208 1.23968 1.19248 0.97484 0.92384 0.78942 1.21457 1.06794 1.26219 1.04224 0.91944 1.24944 0.96902 0.94747 0.96990 1.69904 1.36916 1.28411 1.16684 0.86718 0.83493 0.78851 0.79277 1.20145 1.21034 1.20186 1.01775 0.72278 0.73753 0.72711 1.93565 1.69611 1.76270 1.58252 1.93594 1.85476 1.30924 1.85627 1.56072 1.25136 1.67827 1.39373 1.20007 0.78340 1.03786 0.91207 1.24512 0.94454 0.85309 0.94747 1.70408 1.09893 1.29238 1.14708 1.23717 0.92401 0.92024 0.98048 1.20395 0.95264 0.96381 0.79854 1.87945 1.63874 1.64131 1.14249 1.22776 0.94877 0.96889 0.91757 1.77936 1.08529 1.15861 1.10395 1.48067 1.12570 1.21131 1.36997 0.70855 0.92071 0.92377 0.92654 0.89964 0.91952 0.94225 0.92839 0.92311 0.75792 0.86713 0.86266 0.90718 0.90008 0.89313 0.93826 0.93559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.54 10.24 37.16 0.38 -2.16 16 2 C 0.13 2.09 6.02 -4.04 -0.02 2.06 16 3 N -0.99 -18.53 2.84 -115.66 -0.33 -18.86 16 4 C 0.24 5.43 5.48 -5.19 -0.03 5.40 16 5 C -0.55 -12.61 8.13 -34.44 -0.28 -12.89 16 6 H 0.06 1.32 6.45 -52.49 -0.34 0.98 16 7 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.88 -23.47 13.29 55.43 0.74 -22.73 16 9 Si 0.89 18.85 29.54 -169.99 -5.02 13.83 16 10 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 13 S 2.79 51.73 6.11 -107.50 -0.66 51.07 16 14 O -0.99 -19.32 17.11 -57.17 -0.98 -20.30 16 15 O -0.97 -21.44 16.08 -57.17 -0.92 -22.36 16 16 N -1.13 -17.41 6.04 -11.66 -0.07 -17.48 16 17 C 0.20 3.09 6.77 -5.19 -0.04 3.06 16 18 C 0.29 4.47 7.64 -155.70 -1.19 3.28 16 19 N -0.51 -8.60 11.19 -8.16 -0.09 -8.69 16 20 C 0.22 3.36 7.77 -156.85 -1.22 2.14 16 21 C 0.16 1.86 6.56 36.01 0.24 2.10 16 22 O -0.38 -4.78 10.69 -35.23 -0.38 -5.16 16 23 C 0.03 0.26 11.01 101.05 1.11 1.37 16 24 N -0.30 -4.43 12.80 32.42 0.41 -4.01 16 25 N -0.47 -6.36 7.45 32.62 0.24 -6.12 16 26 H 0.44 4.64 8.96 -182.33 -1.63 3.00 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 1.30 8.06 -51.93 -0.42 0.88 16 31 H 0.06 0.88 7.62 -51.93 -0.40 0.49 16 32 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.05 1.33 6.84 -51.93 -0.36 0.98 16 34 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 35 H 0.41 5.51 8.66 -34.47 -0.30 5.22 16 36 H 0.12 1.79 5.51 -51.93 -0.29 1.50 16 37 H 0.12 2.08 7.70 -51.93 -0.40 1.68 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 LS Contribution 370.88 15.07 5.59 5.59 Total: -1.00 -32.47 370.88 -9.67 -42.14 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -7.07 Total: 7.12 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -1.14 Total: 5.97 kcal Atomic # 7 Polarization: -78.80 SS G_CDS: 0.90 Total: -77.90 kcal Atomic # 8 Polarization: -45.55 SS G_CDS: -2.27 Total: -47.82 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.02 Total: 13.83 kcal Atomic # 16 Polarization: 51.73 SS G_CDS: -0.66 Total: 51.07 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.47 -9.67 -42.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649876042.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.614 kcal (2) G-P(sol) polarization free energy of solvation -32.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds