Wall clock time and date at job start Tue Mar 31 2020 18:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47394 * 2 1 4 4 C 1.46506 * 120.00194 * 274.53355 * 3 2 1 5 5 C 1.50705 * 109.46709 * 280.85451 * 4 3 2 6 6 H 1.07994 * 120.00576 * 358.38290 * 5 4 3 7 7 C 1.37882 * 119.99346 * 178.38015 * 5 4 3 8 8 N 1.31510 * 120.00326 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99586 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47575 * 59.99679 * 9 7 5 11 11 H 1.48495 * 109.47273 * 180.02562 * 9 7 5 12 12 H 1.48509 * 109.46954 * 300.00049 * 9 7 5 13 13 S 1.65596 * 120.00044 * 94.53320 * 3 2 1 14 14 O 1.42100 * 106.40092 * 336.66224 * 13 3 2 15 15 O 1.42098 * 106.40475 * 203.74216 * 13 3 2 16 16 N 1.65597 * 107.22251 * 90.20289 * 13 3 2 17 17 C 1.46503 * 120.00062 * 65.73238 * 16 13 3 18 18 C 1.50703 * 109.47033 * 163.18460 * 17 16 13 19 19 N 1.30828 * 125.95819 * 275.02730 * 18 17 16 20 20 C 1.33240 * 109.82614 * 180.02562 * 19 18 17 21 21 C 1.50700 * 125.52903 * 179.97438 * 20 19 18 22 22 O 1.42908 * 109.47132 * 89.99792 * 21 20 19 23 23 C 1.42896 * 114.00108 * 180.02562 * 22 21 20 24 24 N 1.30716 * 108.94849 * 359.97438 * 20 19 18 25 25 N 1.34427 * 125.96185 * 94.71713 * 18 17 16 26 26 H 0.97005 * 126.82024 * 0.02562 * 25 18 17 27 27 H 1.09006 * 109.46853 * 65.04787 * 1 2 3 28 28 H 1.09003 * 109.46983 * 185.04499 * 1 2 3 29 29 H 1.08997 * 109.47034 * 305.04844 * 1 2 3 30 30 H 1.09003 * 109.47018 * 240.00221 * 2 1 3 31 31 H 1.08995 * 109.47331 * 120.00515 * 2 1 3 32 32 H 1.09000 * 109.46976 * 40.85411 * 4 3 2 33 33 H 1.08996 * 109.47532 * 160.85833 * 4 3 2 34 34 H 0.96996 * 119.99765 * 179.97438 * 8 7 5 35 35 H 0.97004 * 120.00099 * 245.74023 * 16 13 3 36 36 H 1.08995 * 109.46939 * 283.18733 * 17 16 13 37 37 H 1.08994 * 109.47017 * 43.18437 * 17 16 13 38 38 H 1.08996 * 109.47713 * 209.99719 * 21 20 19 39 39 H 1.09000 * 109.47214 * 330.00387 * 21 20 19 40 40 H 1.08998 * 109.47212 * 180.02562 * 23 22 21 41 41 H 1.09004 * 109.46843 * 299.99928 * 23 22 21 42 42 H 1.08999 * 109.47531 * 60.00042 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1680 2.1053 -1.2648 5 6 3.4437 1.6748 -1.9421 6 1 4.0923 0.9552 -1.4648 7 6 3.7825 2.1996 -3.1712 8 7 2.9924 3.0754 -3.7527 9 14 5.3633 1.6656 -4.0111 10 1 5.3292 0.1994 -4.2441 11 1 5.4959 2.3709 -5.3111 12 1 6.5220 2.0023 -3.1453 13 16 2.4013 2.1240 1.4296 14 8 1.6718 1.4450 2.4426 15 8 2.2920 3.5216 1.1975 16 7 4.0026 1.8229 1.7251 17 6 5.0280 2.3764 0.8371 18 6 6.3690 2.3214 1.5227 19 7 6.8453 3.2147 2.3514 20 6 8.0569 2.8462 2.7656 21 6 8.9260 3.6167 3.7259 22 8 8.6458 3.1979 5.0632 23 6 9.4204 3.8712 6.0574 24 7 8.3695 1.7080 2.2041 25 7 7.2819 1.3432 1.3938 26 1 7.2058 0.5453 0.8474 27 1 -0.3633 0.4336 -0.9318 28 1 -0.3633 -1.0237 0.0904 29 1 -0.3633 0.5901 0.8413 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.3200 1.8838 -1.9128 33 1 2.2049 3.1767 -1.0680 34 1 3.2310 3.4449 -4.6172 35 1 4.2617 1.2800 2.4861 36 1 5.0658 1.7926 -0.0825 37 1 4.7832 3.4118 0.6004 38 1 9.9750 3.4278 3.4983 39 1 8.7192 4.6824 3.6281 40 1 9.1491 3.4968 7.0445 41 1 10.4799 3.6878 5.8783 42 1 9.2236 4.9421 6.0079 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649876042.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:27 Heat of formation + Delta-G solvation = -59.640214 kcal Electronic energy + Delta-G solvation = -27380.780837 eV Core-core repulsion = 23330.955995 eV Total energy + Delta-G solvation = -4049.824841 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 333.130 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.39399 -38.86004 -38.35870 -37.67617 -36.90395 -36.64503 -34.62933 -33.98552 -32.63547 -31.48393 -29.28210 -28.48840 -27.53828 -26.64099 -24.90320 -23.27200 -22.74129 -21.77986 -20.49158 -19.37522 -18.71787 -18.53930 -18.25437 -17.73717 -17.39854 -16.87577 -16.67747 -16.45923 -16.25776 -16.04529 -15.42492 -14.96957 -14.83473 -14.69780 -14.52846 -13.73843 -13.70798 -13.59503 -13.48372 -13.32516 -13.22670 -13.14665 -13.02112 -12.94542 -12.70866 -12.63577 -12.41729 -12.20460 -12.06898 -11.74494 -11.53013 -11.36110 -11.30198 -10.88379 -10.73969 -10.65386 -10.51006 -9.77162 -8.11215 -6.24894 -0.41990 0.29787 1.37583 1.46378 1.48288 1.50015 1.56391 2.06287 2.46037 2.54495 2.62264 3.12152 3.22257 3.38802 3.49877 3.64700 4.00097 4.19283 4.24005 4.28742 4.47310 4.51814 4.54678 4.56154 4.63048 4.68870 4.77114 4.88711 4.97178 5.04302 5.13601 5.22221 5.35354 5.46793 5.59439 5.80275 5.84706 5.93597 6.06070 6.09430 6.16120 6.85682 6.87304 7.45222 8.96811 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010978 B = 0.004163 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.035296 B = 6724.983717 C = 8510.093292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.121 3.879 3 N -0.991 5.991 4 C 0.255 3.745 5 C -0.540 4.540 6 H 0.085 0.915 7 C 0.017 3.983 8 N -0.926 5.926 9 Si 0.950 3.050 10 H -0.265 1.265 11 H -0.297 1.297 12 H -0.262 1.262 13 S 2.804 3.196 14 O -0.999 6.999 15 O -1.011 7.011 16 N -1.111 6.111 17 C 0.201 3.799 18 C 0.286 3.714 19 N -0.541 5.541 20 C 0.211 3.789 21 C 0.159 3.841 22 O -0.415 6.415 23 C 0.027 3.973 24 N -0.302 5.302 25 N -0.454 5.454 26 H 0.459 0.541 27 H 0.048 0.952 28 H 0.089 0.911 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.019 0.981 33 H 0.023 0.977 34 H 0.264 0.736 35 H 0.422 0.578 36 H 0.121 0.879 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.061 0.939 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.210 -4.912 11.710 16.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.004 4.004 3 N -0.833 5.833 4 C 0.132 3.868 5 C -0.579 4.579 6 H 0.103 0.897 7 C -0.183 4.183 8 N -0.566 5.566 9 Si 0.775 3.225 10 H -0.190 1.190 11 H -0.223 1.223 12 H -0.187 1.187 13 S 2.812 3.188 14 O -0.983 6.983 15 O -0.994 6.994 16 N -0.873 5.873 17 C 0.073 3.927 18 C 0.005 3.995 19 N -0.271 5.271 20 C -0.072 4.072 21 C 0.080 3.920 22 O -0.333 6.333 23 C -0.068 4.068 24 N -0.134 5.134 25 N -0.175 5.175 26 H 0.308 0.692 27 H 0.067 0.933 28 H 0.107 0.893 29 H 0.063 0.937 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.037 0.963 33 H 0.041 0.959 34 H 0.073 0.927 35 H 0.257 0.743 36 H 0.138 0.862 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.110 0.890 40 H 0.115 0.885 41 H 0.079 0.921 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.937 -4.342 12.261 16.368 hybrid contribution 0.759 -0.621 -1.270 1.605 sum 10.696 -4.963 10.991 16.120 Atomic orbital electron populations 1.22200 0.96252 1.03073 1.01298 1.21273 0.94410 0.81118 1.03593 1.57617 1.78936 1.24279 1.22448 1.18827 0.96866 0.91142 0.80005 1.21808 1.06725 1.25538 1.03780 0.89681 1.25740 0.99800 0.94836 0.97964 1.70057 1.39070 1.30344 1.17111 0.85736 0.80274 0.78695 0.77765 1.18985 1.22341 1.18655 1.01094 0.72652 0.72747 0.72332 1.93550 1.70289 1.76134 1.58311 1.93549 1.86266 1.33527 1.86088 1.55677 1.23993 1.67799 1.39811 1.19857 0.78668 1.02790 0.91430 1.24227 0.94366 0.85882 0.94981 1.70387 1.11004 1.30211 1.15497 1.24389 0.92214 0.92196 0.98398 1.20590 0.95743 0.96394 0.79274 1.87888 1.65248 1.65220 1.14956 1.23002 0.95480 0.97320 0.91035 1.77907 1.08879 1.15992 1.10604 1.47997 1.11777 1.21165 1.36595 0.69191 0.93276 0.89253 0.93723 0.89504 0.89469 0.96281 0.95897 0.92727 0.74286 0.86155 0.88184 0.88434 0.88977 0.88463 0.92061 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.84 10.24 71.98 0.74 -4.11 16 2 C 0.12 3.66 6.02 86.38 0.52 4.18 16 3 N -0.99 -36.58 2.84 -519.84 -1.48 -38.06 16 4 C 0.26 11.66 5.48 85.63 0.47 12.12 16 5 C -0.54 -24.47 8.13 25.60 0.21 -24.26 16 6 H 0.09 3.39 6.45 -2.91 -0.02 3.37 16 7 C 0.02 0.82 5.46 84.66 0.46 1.28 16 8 N -0.93 -50.32 13.29 21.45 0.28 -50.04 16 9 Si 0.95 37.88 29.54 68.60 2.03 39.91 16 10 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 11 H -0.30 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 13 S 2.80 102.97 6.11 -56.49 -0.35 102.63 16 14 O -1.00 -37.68 17.11 -128.00 -2.19 -39.87 16 15 O -1.01 -45.51 16.08 -128.00 -2.06 -47.57 16 16 N -1.11 -33.11 6.04 -190.79 -1.15 -34.26 16 17 C 0.20 6.20 6.77 85.63 0.58 6.78 16 18 C 0.29 8.44 7.64 138.23 1.06 9.50 16 19 N -0.54 -17.63 11.19 -179.73 -2.01 -19.64 16 20 C 0.21 6.11 7.77 138.63 1.08 7.19 16 21 C 0.16 3.42 6.56 71.24 0.47 3.89 16 22 O -0.41 -9.67 10.69 -148.98 -1.59 -11.26 16 23 C 0.03 0.37 11.01 113.37 1.25 1.62 16 24 N -0.30 -8.48 12.80 -51.33 -0.66 -9.14 16 25 N -0.45 -11.41 7.45 -50.71 -0.38 -11.79 16 26 H 0.46 8.37 8.96 -213.09 -1.91 6.46 16 27 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.09 2.56 8.06 -2.39 -0.02 2.54 16 31 H 0.09 2.21 7.62 -2.39 -0.02 2.19 16 32 H 0.02 0.94 8.14 -2.39 -0.02 0.93 16 33 H 0.02 1.19 6.84 -2.39 -0.02 1.18 16 34 H 0.26 13.79 8.31 -92.71 -0.77 13.01 16 35 H 0.42 10.61 8.66 -96.74 -0.84 9.77 16 36 H 0.12 3.55 5.51 -2.39 -0.01 3.54 16 37 H 0.10 3.52 7.70 -2.39 -0.02 3.51 16 38 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 42 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -69.69 370.88 -4.40 -74.10 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: -1.68 Total: 26.80 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: 6.82 Total: 18.19 kcal Atomic # 7 Polarization: -157.53 SS G_CDS: -5.39 Total: -162.92 kcal Atomic # 8 Polarization: -92.86 SS G_CDS: -5.84 Total: -98.70 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 2.03 Total: 39.91 kcal Atomic # 16 Polarization: 102.97 SS G_CDS: -0.35 Total: 102.63 kcal Total: -69.69 -4.40 -74.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649876042.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.457 kcal (2) G-P(sol) polarization free energy of solvation -69.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds