Wall clock time and date at job start Tue Mar 31 2020 18:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46501 * 109.47282 * 2 1 4 4 C 1.36933 * 120.00489 * 275.31565 * 3 2 1 5 5 H 1.08002 * 120.00011 * 37.57767 * 4 3 2 6 6 C 1.38809 * 120.00237 * 217.57801 * 4 3 2 7 7 N 1.31618 * 119.99797 * 21.41914 * 6 4 3 8 8 Si 1.86803 * 120.00065 * 201.42417 * 6 4 3 9 9 H 1.48499 * 109.47017 * 89.99822 * 8 6 4 10 10 H 1.48502 * 109.46912 * 209.99569 * 8 6 4 11 11 H 1.48495 * 109.47051 * 329.99746 * 8 6 4 12 12 C 1.46501 * 119.99667 * 95.31006 * 3 2 1 13 13 C 1.53000 * 109.47444 * 270.00405 * 12 3 2 14 14 N 1.46505 * 109.47092 * 180.02562 * 13 12 3 15 15 C 1.34781 * 119.99695 * 179.97438 * 14 13 12 16 16 O 1.21764 * 119.99797 * 0.02562 * 15 14 13 17 17 C 1.46109 * 119.99497 * 179.97438 * 15 14 13 18 18 S 1.75811 * 125.48060 * 359.97438 * 17 15 14 19 19 C 1.70574 * 91.67408 * 180.02562 * 18 17 15 20 20 C 1.33573 * 111.17462 * 359.75042 * 19 18 17 21 21 C 1.37356 * 125.47242 * 179.97438 * 17 15 14 22 22 N 1.39878 * 123.49143 * 359.96647 * 21 17 15 23 23 C 1.36606 * 125.66567 * 309.68707 * 22 21 17 24 24 C 1.34849 * 108.19250 * 179.83107 * 23 22 21 25 25 C 1.40968 * 107.47345 * 0.42453 * 24 23 22 26 26 C 1.34841 * 107.47506 * 359.73605 * 25 24 23 27 27 H 1.08993 * 109.47047 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46398 * 299.99916 * 1 2 3 29 29 H 1.09003 * 109.47042 * 59.99356 * 1 2 3 30 30 H 1.08999 * 109.46497 * 240.00837 * 2 1 3 31 31 H 1.08994 * 109.47296 * 120.00620 * 2 1 3 32 32 H 0.97004 * 120.00226 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.47422 * 150.00166 * 12 3 2 34 34 H 1.08997 * 109.46791 * 30.00315 * 12 3 2 35 35 H 1.08997 * 109.47459 * 59.99682 * 13 12 3 36 36 H 1.08997 * 109.47053 * 299.99749 * 13 12 3 37 37 H 0.96994 * 119.99808 * 359.97438 * 14 13 12 38 38 H 1.08001 * 124.41007 * 179.97438 * 19 18 17 39 39 H 1.08001 * 122.46113 * 180.22696 * 20 19 18 40 40 H 1.07993 * 125.90506 * 359.96399 * 23 22 21 41 41 H 1.08003 * 126.26171 * 180.19486 * 24 23 22 42 42 H 1.07997 * 126.26256 * 179.69959 * 25 24 23 43 43 H 1.07996 * 125.90326 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1431 2.0634 -1.1807 5 1 1.4105 1.9280 -1.9626 6 6 3.2112 2.9290 -1.3728 7 7 4.3027 2.7981 -0.6490 8 14 3.0993 4.2797 -2.6583 9 1 2.5375 5.5070 -2.0392 10 1 4.4549 4.5698 -3.1907 11 1 2.2166 3.8360 -3.7669 12 6 2.3733 2.0326 1.2633 13 6 1.1427 2.7381 1.8367 14 7 1.4978 3.3900 3.0998 15 6 0.5655 4.0775 3.7887 16 8 -0.5721 4.1564 3.3615 17 6 0.9195 4.7272 5.0486 18 16 2.5104 4.7046 5.7966 19 6 1.9630 5.6499 7.1066 20 6 0.6702 5.9580 6.9723 21 6 0.0628 5.4538 5.8391 22 7 -1.2839 5.6655 5.5261 23 6 -1.7619 6.1178 4.3290 24 6 -3.1060 6.1879 4.4117 25 6 -3.4725 5.7736 5.7083 26 6 -2.3394 5.4599 6.3686 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 5.0492 3.4027 -0.7834 33 1 3.1618 2.7640 1.0861 34 1 2.7256 1.2832 1.9721 35 1 0.3542 2.0067 2.0140 36 1 0.7904 3.4875 1.1280 37 1 2.4039 3.3268 3.4402 38 1 2.5820 5.9619 7.9348 39 1 0.1381 6.5549 7.6983 40 1 -1.1664 6.3729 3.4649 41 1 -3.7784 6.5069 3.6290 42 1 -4.4769 5.7182 6.1012 43 1 -2.2770 5.1075 7.3875 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663407120.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:42 Heat of formation + Delta-G solvation = 80.026356 kcal Electronic energy + Delta-G solvation = -26003.021491 eV Core-core repulsion = 22370.102310 eV Total energy + Delta-G solvation = -3632.919181 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.46162 -39.30144 -37.70833 -36.31938 -34.18247 -31.95858 -31.92000 -30.31129 -29.17413 -28.57863 -27.37685 -24.99811 -24.16457 -22.27213 -21.33585 -21.00114 -20.35285 -20.23789 -19.01407 -18.65680 -17.23204 -16.68746 -15.81844 -15.31926 -15.23856 -14.92630 -14.79488 -14.38891 -13.93094 -13.90832 -13.68428 -13.46318 -13.29081 -13.01945 -12.60763 -12.51253 -12.40907 -12.19058 -12.10135 -11.88083 -11.54967 -11.37037 -11.15485 -10.80954 -10.69453 -10.53128 -10.13174 -9.95359 -9.92589 -9.69224 -9.49479 -9.12815 -8.65127 -8.51475 -8.20983 -7.93500 -6.67169 -5.87735 -3.46586 0.11994 1.06701 1.47592 1.79369 2.61939 3.04132 3.23533 3.26195 3.31333 3.37887 3.40685 3.43485 4.42820 4.56374 4.77964 4.90507 5.09757 5.23841 5.32560 5.44034 5.49740 5.53268 5.67068 5.76857 5.84335 5.95716 6.05950 6.11456 6.35544 6.37381 6.40539 6.43164 6.46233 6.65476 6.73375 6.89052 6.94546 7.10621 7.13922 7.32391 7.46861 7.55274 7.73808 7.77234 8.37086 8.44414 9.10370 9.72139 10.30172 11.12496 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012169 B = 0.003380 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.387441 B = 8282.431531 C = 8839.759615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.579 5.579 4 C -0.262 4.262 5 H 0.062 0.938 6 C 0.015 3.985 7 N -0.887 5.887 8 Si 0.897 3.103 9 H -0.285 1.285 10 H -0.290 1.290 11 H -0.276 1.276 12 C 0.137 3.863 13 C 0.099 3.901 14 N -0.712 5.712 15 C 0.575 3.425 16 O -0.517 6.517 17 C -0.271 4.271 18 S 0.254 5.746 19 C -0.226 4.226 20 C -0.149 4.149 21 C 0.176 3.824 22 N -0.389 5.389 23 C 0.055 3.945 24 C -0.212 4.212 25 C -0.187 4.187 26 C -0.025 4.025 27 H 0.037 0.963 28 H 0.044 0.956 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.034 0.966 32 H 0.255 0.745 33 H 0.099 0.901 34 H 0.029 0.971 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.393 0.607 38 H 0.177 0.823 39 H 0.151 0.849 40 H 0.158 0.842 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.143 5.200 17.916 19.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.299 5.299 4 C -0.391 4.391 5 H 0.080 0.920 6 C -0.186 4.186 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.212 1.212 10 H -0.217 1.217 11 H -0.201 1.201 12 C 0.010 3.990 13 C -0.026 4.026 14 N -0.362 5.362 15 C 0.359 3.641 16 O -0.395 6.395 17 C -0.394 4.394 18 S 0.521 5.479 19 C -0.364 4.364 20 C -0.181 4.181 21 C 0.069 3.931 22 N -0.063 5.063 23 C -0.073 4.073 24 C -0.236 4.236 25 C -0.212 4.212 26 C -0.151 4.151 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.117 0.883 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.227 0.773 38 H 0.194 0.806 39 H 0.168 0.832 40 H 0.175 0.825 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.052 4.585 17.221 18.080 hybrid contribution -0.978 1.404 0.078 1.713 sum -4.030 5.989 17.299 18.744 Atomic orbital electron populations 1.22389 0.99856 0.99134 1.01411 1.20885 0.91783 0.86901 0.98925 1.43604 1.76025 1.08308 1.02011 1.19049 1.04827 1.21284 0.93968 0.91986 1.25178 0.94113 1.01170 0.98124 1.69993 1.03153 1.37249 1.42561 0.86388 0.76978 0.82547 0.81503 1.21213 1.21658 1.20095 1.21059 0.94460 0.96987 0.86535 1.22555 1.01360 0.96612 0.82070 1.46049 1.12401 1.52994 1.24804 1.16782 0.85773 0.79276 0.82236 1.90908 1.19228 1.60783 1.68543 1.24857 0.99556 1.10624 1.04339 1.83241 1.06816 1.46384 1.11456 1.25079 0.99827 1.06035 1.05475 1.19740 0.94683 1.04476 0.99198 1.16966 0.84146 0.97129 0.94855 1.40889 1.01969 1.50944 1.12539 1.21797 0.94766 1.02461 0.88262 1.20839 0.93939 1.10657 0.98153 1.20864 0.97244 1.07735 0.95346 1.21747 0.85710 1.10611 0.96987 0.94411 0.93696 0.93071 0.93507 0.94735 0.93495 0.88346 0.95270 0.92653 0.91406 0.77339 0.80553 0.83175 0.82466 0.84653 0.84696 0.82505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 10.21 37.16 0.38 -2.75 16 2 C 0.14 2.93 6.44 -4.04 -0.03 2.91 16 3 N -0.58 -13.91 2.43 -173.24 -0.42 -14.33 16 4 C -0.26 -6.95 9.45 -15.06 -0.14 -7.10 16 5 H 0.06 1.67 7.92 -52.49 -0.42 1.25 16 6 C 0.01 0.39 4.95 -17.43 -0.09 0.30 16 7 N -0.89 -24.35 11.47 55.49 0.64 -23.71 16 8 Si 0.90 21.19 29.61 -169.99 -5.03 16.16 16 9 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 C 0.14 3.01 5.45 -4.04 -0.02 2.98 16 13 C 0.10 1.99 6.00 -4.04 -0.02 1.97 16 14 N -0.71 -12.10 5.55 -61.79 -0.34 -12.44 16 15 C 0.57 10.00 7.72 -13.10 -0.10 9.90 16 16 O -0.52 -10.60 13.02 5.13 0.07 -10.53 16 17 C -0.27 -3.79 6.43 -36.75 -0.24 -4.02 16 18 S 0.25 2.44 22.13 -107.50 -2.38 0.06 16 19 C -0.23 -1.82 10.90 29.10 0.32 -1.50 16 20 C -0.15 -1.47 9.97 -41.26 -0.41 -1.89 16 21 C 0.18 2.37 5.99 -84.55 -0.51 1.86 16 22 N -0.39 -5.76 2.65 -61.59 -0.16 -5.93 16 23 C 0.05 0.88 8.52 -16.63 -0.14 0.74 16 24 C -0.21 -3.16 10.86 -39.75 -0.43 -3.59 16 25 C -0.19 -2.51 10.86 -39.75 -0.43 -2.94 16 26 C -0.02 -0.33 11.25 -16.63 -0.19 -0.51 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.04 0.84 6.64 -51.93 -0.34 0.50 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 31 H 0.03 0.66 7.83 -51.93 -0.41 0.26 16 32 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 33 H 0.10 2.41 5.52 -51.93 -0.29 2.13 16 34 H 0.03 0.59 7.86 -51.93 -0.41 0.19 16 35 H 0.06 1.15 6.64 -51.93 -0.34 0.80 16 36 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 37 H 0.39 5.75 7.57 -40.82 -0.31 5.44 16 38 H 0.18 0.85 8.06 -52.49 -0.42 0.42 16 39 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.16 2.61 7.43 -52.49 -0.39 2.22 16 41 H 0.14 1.79 8.06 -52.48 -0.42 1.37 16 42 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 43 H 0.16 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 371.71 15.07 5.60 5.60 Total: -1.00 -31.30 371.71 -9.93 -41.23 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -5.84 Total: 7.53 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -2.05 Total: -3.65 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: -0.29 Total: -56.40 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.07 Total: -10.53 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -2.38 Total: 0.06 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.30 -9.93 -41.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663407120.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.258 kcal (2) G-P(sol) polarization free energy of solvation -31.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds