Wall clock time and date at job start Tue Mar 31 2020 18:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46501 * 109.47282 * 2 1 4 4 C 1.36933 * 120.00489 * 275.31565 * 3 2 1 5 5 H 1.08002 * 120.00011 * 37.57767 * 4 3 2 6 6 C 1.38809 * 120.00237 * 217.57801 * 4 3 2 7 7 N 1.31618 * 119.99797 * 21.41914 * 6 4 3 8 8 Si 1.86803 * 120.00065 * 201.42417 * 6 4 3 9 9 H 1.48499 * 109.47017 * 89.99822 * 8 6 4 10 10 H 1.48502 * 109.46912 * 209.99569 * 8 6 4 11 11 H 1.48495 * 109.47051 * 329.99746 * 8 6 4 12 12 C 1.46501 * 119.99667 * 95.31006 * 3 2 1 13 13 C 1.53000 * 109.47444 * 270.00405 * 12 3 2 14 14 N 1.46505 * 109.47092 * 180.02562 * 13 12 3 15 15 C 1.34781 * 119.99695 * 179.97438 * 14 13 12 16 16 O 1.21764 * 119.99797 * 0.02562 * 15 14 13 17 17 C 1.46109 * 119.99497 * 179.97438 * 15 14 13 18 18 S 1.75811 * 125.48060 * 359.97438 * 17 15 14 19 19 C 1.70574 * 91.67408 * 180.02562 * 18 17 15 20 20 C 1.33573 * 111.17462 * 359.75042 * 19 18 17 21 21 C 1.37356 * 125.47242 * 179.97438 * 17 15 14 22 22 N 1.39878 * 123.49143 * 359.96647 * 21 17 15 23 23 C 1.36606 * 125.66567 * 309.68707 * 22 21 17 24 24 C 1.34849 * 108.19250 * 179.83107 * 23 22 21 25 25 C 1.40968 * 107.47345 * 0.42453 * 24 23 22 26 26 C 1.34841 * 107.47506 * 359.73605 * 25 24 23 27 27 H 1.08993 * 109.47047 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46398 * 299.99916 * 1 2 3 29 29 H 1.09003 * 109.47042 * 59.99356 * 1 2 3 30 30 H 1.08999 * 109.46497 * 240.00837 * 2 1 3 31 31 H 1.08994 * 109.47296 * 120.00620 * 2 1 3 32 32 H 0.97004 * 120.00226 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.47422 * 150.00166 * 12 3 2 34 34 H 1.08997 * 109.46791 * 30.00315 * 12 3 2 35 35 H 1.08997 * 109.47459 * 59.99682 * 13 12 3 36 36 H 1.08997 * 109.47053 * 299.99749 * 13 12 3 37 37 H 0.96994 * 119.99808 * 359.97438 * 14 13 12 38 38 H 1.08001 * 124.41007 * 179.97438 * 19 18 17 39 39 H 1.08001 * 122.46113 * 180.22696 * 20 19 18 40 40 H 1.07993 * 125.90506 * 359.96399 * 23 22 21 41 41 H 1.08003 * 126.26171 * 180.19486 * 24 23 22 42 42 H 1.07997 * 126.26256 * 179.69959 * 25 24 23 43 43 H 1.07996 * 125.90326 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1431 2.0634 -1.1807 5 1 1.4105 1.9280 -1.9626 6 6 3.2112 2.9290 -1.3728 7 7 4.3027 2.7981 -0.6490 8 14 3.0993 4.2797 -2.6583 9 1 2.5375 5.5070 -2.0392 10 1 4.4549 4.5698 -3.1907 11 1 2.2166 3.8360 -3.7669 12 6 2.3733 2.0326 1.2633 13 6 1.1427 2.7381 1.8367 14 7 1.4978 3.3900 3.0998 15 6 0.5655 4.0775 3.7887 16 8 -0.5721 4.1564 3.3615 17 6 0.9195 4.7272 5.0486 18 16 2.5104 4.7046 5.7966 19 6 1.9630 5.6499 7.1066 20 6 0.6702 5.9580 6.9723 21 6 0.0628 5.4538 5.8391 22 7 -1.2839 5.6655 5.5261 23 6 -1.7619 6.1178 4.3290 24 6 -3.1060 6.1879 4.4117 25 6 -3.4725 5.7736 5.7083 26 6 -2.3394 5.4599 6.3686 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 5.0492 3.4027 -0.7834 33 1 3.1618 2.7640 1.0861 34 1 2.7256 1.2832 1.9721 35 1 0.3542 2.0067 2.0140 36 1 0.7904 3.4875 1.1280 37 1 2.4039 3.3268 3.4402 38 1 2.5820 5.9619 7.9348 39 1 0.1381 6.5549 7.6983 40 1 -1.1664 6.3729 3.4649 41 1 -3.7784 6.5069 3.6290 42 1 -4.4769 5.7182 6.1012 43 1 -2.2770 5.1075 7.3875 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663407120.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:42 Heat of formation + Delta-G solvation = 62.622297 kcal Electronic energy + Delta-G solvation = -26003.776188 eV Core-core repulsion = 22370.102310 eV Total energy + Delta-G solvation = -3633.673878 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.50686 -40.64332 -38.67928 -38.05572 -35.73010 -33.85910 -32.90935 -31.77000 -30.53985 -29.72234 -28.93869 -26.37899 -25.62378 -23.71918 -22.41831 -22.31988 -22.08956 -21.30404 -20.06553 -19.88879 -18.55375 -18.21564 -17.13052 -16.97871 -16.56081 -16.41564 -15.77014 -15.72760 -15.45233 -15.37702 -14.98970 -14.69665 -14.45325 -14.24757 -14.14584 -13.93883 -13.62961 -13.42758 -13.24655 -13.19293 -13.05291 -12.96980 -12.67032 -12.42613 -12.33483 -12.14079 -12.04984 -11.72325 -11.55195 -11.20181 -10.57833 -10.43335 -10.24007 -9.85720 -9.17726 -9.03704 -8.63092 -7.88780 -5.51577 -0.80839 0.21282 0.70351 0.94731 1.41936 1.46334 1.52913 1.55886 1.97166 2.01595 2.08673 2.14484 2.48012 3.19122 3.59623 3.78330 3.88591 3.97483 4.24998 4.26837 4.31517 4.37838 4.43651 4.51977 4.64339 4.68577 4.75542 4.78475 4.81698 4.91511 4.98004 5.05443 5.14573 5.26089 5.28008 5.32552 5.37504 5.53526 5.62053 5.70332 6.03519 6.23508 6.37219 6.44857 6.52850 7.03836 7.13054 7.79292 8.31886 9.07530 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012169 B = 0.003380 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.387441 B = 8282.431531 C = 8839.759615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 N -0.596 5.596 4 C -0.273 4.273 5 H 0.052 0.948 6 C -0.025 4.025 7 N -0.909 5.909 8 Si 0.949 3.051 9 H -0.290 1.290 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.146 3.854 13 C 0.123 3.877 14 N -0.708 5.708 15 C 0.573 3.427 16 O -0.558 6.558 17 C -0.321 4.321 18 S 0.298 5.702 19 C -0.192 4.192 20 C -0.162 4.162 21 C 0.170 3.830 22 N -0.396 5.396 23 C 0.025 3.975 24 C -0.223 4.223 25 C -0.199 4.199 26 C -0.021 4.021 27 H 0.069 0.931 28 H 0.038 0.962 29 H 0.034 0.966 30 H 0.039 0.961 31 H 0.052 0.948 32 H 0.255 0.745 33 H 0.075 0.925 34 H 0.046 0.954 35 H 0.049 0.951 36 H 0.032 0.968 37 H 0.405 0.595 38 H 0.221 0.779 39 H 0.173 0.827 40 H 0.137 0.863 41 H 0.141 0.859 42 H 0.160 0.840 43 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.550 5.360 20.827 21.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.012 3.988 3 N -0.318 5.318 4 C -0.403 4.403 5 H 0.069 0.931 6 C -0.223 4.223 7 N -0.552 5.552 8 Si 0.777 3.223 9 H -0.218 1.218 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.018 3.982 13 C -0.003 4.003 14 N -0.360 5.360 15 C 0.360 3.640 16 O -0.439 6.439 17 C -0.443 4.443 18 S 0.565 5.435 19 C -0.330 4.330 20 C -0.192 4.192 21 C 0.061 3.939 22 N -0.071 5.071 23 C -0.103 4.103 24 C -0.247 4.247 25 C -0.224 4.224 26 C -0.147 4.147 27 H 0.088 0.912 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.050 0.950 37 H 0.241 0.759 38 H 0.238 0.762 39 H 0.190 0.810 40 H 0.154 0.846 41 H 0.159 0.841 42 H 0.177 0.823 43 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -2.436 4.731 20.150 20.841 hybrid contribution -1.128 1.335 -0.731 1.895 sum -3.564 6.066 19.419 20.654 Atomic orbital electron populations 1.22221 0.98100 1.00860 1.00275 1.21013 0.93054 0.85383 0.99375 1.43837 1.76365 1.09650 1.01915 1.19173 1.04489 1.21937 0.94738 0.93065 1.25721 0.93957 1.02659 0.99951 1.70072 1.03495 1.37839 1.43770 0.85565 0.76885 0.80070 0.79737 1.21756 1.21292 1.19670 1.20921 0.94175 0.96795 0.86292 1.21985 1.00211 0.95318 0.82754 1.45838 1.13214 1.53110 1.23816 1.17249 0.85026 0.78556 0.83154 1.90878 1.20879 1.62122 1.70005 1.24605 1.02761 1.13090 1.03865 1.83108 1.03493 1.45792 1.11063 1.25638 0.99317 1.02931 1.05144 1.19882 0.95428 1.05300 0.98606 1.17490 0.83597 0.96943 0.95854 1.41072 1.03117 1.50669 1.12199 1.21660 0.95244 1.04595 0.88835 1.21121 0.93760 1.10507 0.99342 1.21206 0.98713 1.07815 0.94626 1.22348 0.85143 1.09194 0.98015 0.91186 0.94279 0.94692 0.94291 0.92943 0.93591 0.90695 0.93584 0.93246 0.94962 0.75895 0.76216 0.80957 0.84582 0.84076 0.82253 0.79278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.68 10.21 71.98 0.73 -4.95 16 2 C 0.14 5.65 6.44 86.38 0.56 6.21 16 3 N -0.60 -29.10 2.43 -702.00 -1.71 -30.81 16 4 C -0.27 -14.84 9.45 84.03 0.79 -14.04 16 5 H 0.05 2.84 7.92 -2.91 -0.02 2.82 16 6 C -0.02 -1.33 4.95 84.86 0.42 -0.91 16 7 N -0.91 -50.48 11.47 21.65 0.25 -50.24 16 8 Si 0.95 44.33 29.61 68.60 2.03 46.36 16 9 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 10 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 11 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 12 C 0.15 6.48 5.45 86.38 0.47 6.95 16 13 C 0.12 5.16 6.00 86.38 0.52 5.68 16 14 N -0.71 -24.73 5.55 -467.60 -2.60 -27.33 16 15 C 0.57 20.63 7.72 86.28 0.67 21.29 16 16 O -0.56 -24.24 13.02 -4.55 -0.06 -24.30 16 17 C -0.32 -8.84 6.43 24.11 0.15 -8.69 16 18 S 0.30 4.94 22.13 -56.49 -1.25 3.69 16 19 C -0.19 -2.22 10.90 66.76 0.73 -1.49 16 20 C -0.16 -2.67 9.97 21.18 0.21 -2.46 16 21 C 0.17 4.37 5.99 37.62 0.23 4.60 16 22 N -0.40 -11.70 2.65 -348.77 -0.93 -12.62 16 23 C 0.02 0.83 8.52 83.17 0.71 1.54 16 24 C -0.22 -6.86 10.86 22.16 0.24 -6.62 16 25 C -0.20 -5.19 10.86 22.16 0.24 -4.95 16 26 C -0.02 -0.53 11.25 83.17 0.94 0.40 16 27 H 0.07 2.09 8.14 -2.39 -0.02 2.08 16 28 H 0.04 1.46 6.64 -2.39 -0.02 1.44 16 29 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.04 1.65 8.08 -2.39 -0.02 1.63 16 31 H 0.05 1.96 7.83 -2.39 -0.02 1.94 16 32 H 0.25 13.63 8.31 -92.71 -0.77 12.86 16 33 H 0.08 3.76 5.52 -2.39 -0.01 3.74 16 34 H 0.05 1.87 7.86 -2.39 -0.02 1.85 16 35 H 0.05 2.12 6.64 -2.39 -0.02 2.10 16 36 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.41 11.89 7.57 -92.71 -0.70 11.19 16 38 H 0.22 0.66 8.06 -2.91 -0.02 0.63 16 39 H 0.17 2.07 8.06 -2.91 -0.02 2.04 16 40 H 0.14 5.01 7.43 -2.91 -0.02 4.99 16 41 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 42 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 43 H 0.19 3.30 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -70.94 371.71 3.67 -67.27 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: 0.33 Total: 25.40 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: 7.60 Total: 2.57 kcal Atomic # 7 Polarization: -116.00 SS G_CDS: -4.98 Total: -120.99 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.06 Total: -24.30 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: 4.94 SS G_CDS: -1.25 Total: 3.69 kcal Total: -70.94 3.67 -67.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663407120.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.887 kcal (2) G-P(sol) polarization free energy of solvation -70.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds