Wall clock time and date at job start Tue Mar 31 2020 18:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47209 * 2 1 4 4 C 1.36931 * 120.00302 * 275.31320 * 3 2 1 5 5 H 1.08003 * 120.00081 * 37.57615 * 4 3 2 6 6 C 1.38808 * 120.00166 * 217.58011 * 4 3 2 7 7 N 1.31617 * 120.00141 * 21.42100 * 6 4 3 8 8 Si 1.86805 * 119.99979 * 201.42463 * 6 4 3 9 9 H 1.48503 * 109.46923 * 89.99841 * 8 6 4 10 10 H 1.48498 * 109.47236 * 209.99574 * 8 6 4 11 11 H 1.48499 * 109.47000 * 329.99777 * 8 6 4 12 12 C 1.46500 * 119.99696 * 95.31094 * 3 2 1 13 13 C 1.52994 * 109.47252 * 270.00211 * 12 3 2 14 14 N 1.46500 * 109.47252 * 179.97438 * 13 12 3 15 15 C 1.34778 * 120.00066 * 179.97438 * 14 13 12 16 16 O 1.21280 * 119.99972 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99942 * 180.02562 * 15 14 13 18 18 C 1.50692 * 109.47375 * 180.02562 * 17 15 14 19 19 N 1.28734 * 121.08172 * 269.72044 * 18 17 15 20 20 S 1.69388 * 108.98326 * 179.89916 * 19 18 17 21 21 C 1.76508 * 96.12381 * 0.30656 * 20 19 18 22 22 C 1.38781 * 133.56217 * 179.82945 * 21 20 19 23 23 C 1.36716 * 119.76175 * 179.97438 * 22 21 20 24 24 C 1.38968 * 120.14874 * 0.02562 * 23 22 21 25 25 C 1.36042 * 121.16435 * 0.02562 * 24 23 22 26 26 C 1.40809 * 105.51368 * 359.83005 * 21 20 19 27 27 H 1.09000 * 109.47357 * 59.99747 * 1 2 3 28 28 H 1.08997 * 109.46935 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46743 * 299.99585 * 1 2 3 30 30 H 1.09005 * 109.46743 * 240.00415 * 2 1 3 31 31 H 1.09000 * 109.47357 * 120.00253 * 2 1 3 32 32 H 0.96999 * 119.99936 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.46805 * 150.00107 * 12 3 2 34 34 H 1.09002 * 109.46958 * 30.00193 * 12 3 2 35 35 H 1.09002 * 109.47301 * 60.00199 * 13 12 3 36 36 H 1.09002 * 109.47124 * 299.99879 * 13 12 3 37 37 H 0.97005 * 119.99797 * 0.02562 * 14 13 12 38 38 H 1.08995 * 109.47206 * 59.99514 * 17 15 14 39 39 H 1.09007 * 109.47158 * 300.00027 * 17 15 14 40 40 H 1.08003 * 120.12107 * 359.97438 * 22 21 20 41 41 H 1.07997 * 119.92704 * 179.97438 * 23 22 21 42 42 H 1.08003 * 119.42030 * 180.02562 * 24 23 22 43 43 H 1.07990 * 119.90079 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1431 2.0634 -1.1807 5 1 1.4105 1.9279 -1.9627 6 6 3.2111 2.9289 -1.3728 7 7 4.3026 2.7981 -0.6490 8 14 3.0993 4.2796 -2.6584 9 1 2.5375 5.5070 -2.0392 10 1 4.4548 4.5697 -3.1908 11 1 2.2165 3.8358 -3.7670 12 6 2.3732 2.0326 1.2633 13 6 1.1427 2.7381 1.8367 14 7 1.4974 3.3890 3.1003 15 6 0.5650 4.0764 3.7893 16 8 -0.5678 4.1557 3.3634 17 6 0.9301 4.7464 5.0888 18 6 -0.2820 5.4412 5.6537 19 7 -0.5435 6.6665 5.3582 20 16 -1.9651 7.1334 6.1521 21 6 -2.2476 5.5880 6.9567 22 6 -3.2307 5.1248 7.8199 23 6 -3.1744 3.8408 8.2862 24 6 -2.1365 3.0022 7.8980 25 6 -1.1609 3.4338 7.0537 26 6 -1.1882 4.7535 6.5520 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 5.0488 3.4032 -0.7830 33 1 3.1617 2.7641 1.0860 34 1 2.7255 1.2832 1.9721 35 1 0.3542 2.0067 2.0140 36 1 0.7904 3.4876 1.1279 37 1 2.4036 3.3259 3.4407 38 1 1.7188 5.4775 4.9117 39 1 1.2821 3.9968 5.7978 40 1 -4.0373 5.7763 8.1223 41 1 -3.9377 3.4777 8.9583 42 1 -2.1038 1.9899 8.2731 43 1 -0.3635 2.7649 6.7657 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663457321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:47 Heat of formation + Delta-G solvation = 29.933795 kcal Electronic energy + Delta-G solvation = -25448.538821 eV Core-core repulsion = 21813.447463 eV Total energy + Delta-G solvation = -3635.091358 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.38325 -39.16394 -36.94660 -36.25575 -34.10111 -31.90746 -31.70064 -30.79129 -30.57843 -29.30680 -27.33932 -24.36695 -23.76494 -23.14423 -22.01602 -20.87123 -20.37523 -19.67506 -18.74612 -17.18306 -16.64947 -16.41466 -15.94563 -15.50785 -15.31643 -15.05573 -14.87779 -14.44592 -14.23797 -13.92450 -13.78731 -13.44645 -13.29838 -12.95479 -12.45260 -12.40505 -12.24354 -12.17627 -11.93000 -11.84146 -11.52874 -11.13536 -10.98893 -10.79040 -10.68604 -10.64971 -10.51345 -10.12203 -10.09066 -9.89897 -9.86281 -9.56549 -9.21274 -8.61221 -8.48121 -8.06379 -6.65187 -5.85797 -3.44630 0.28363 0.90245 1.24278 1.62941 1.89112 2.85860 3.29182 3.35350 3.42753 3.44980 3.59258 4.05025 4.23150 4.45263 4.57781 4.69142 4.92487 4.98628 5.01927 5.06090 5.18408 5.26283 5.38664 5.52526 5.56270 5.77105 5.89343 5.96729 6.07833 6.08848 6.14053 6.36137 6.37956 6.39631 6.47922 6.49952 6.66056 6.82609 6.89451 6.99609 7.14360 7.51028 7.78746 7.84791 8.45403 8.50863 9.12556 9.74244 10.31957 11.14268 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015811 B = 0.002733 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.484482 B =10243.983640 C =11264.578585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.580 5.580 4 C -0.261 4.261 5 H 0.062 0.938 6 C 0.014 3.986 7 N -0.887 5.887 8 Si 0.897 3.103 9 H -0.285 1.285 10 H -0.290 1.290 11 H -0.276 1.276 12 C 0.138 3.862 13 C 0.098 3.902 14 N -0.717 5.717 15 C 0.513 3.487 16 O -0.537 6.537 17 C -0.083 4.083 18 C 0.184 3.816 19 N -0.428 5.428 20 S 0.183 5.817 21 C -0.134 4.134 22 C -0.083 4.083 23 C -0.084 4.084 24 C -0.125 4.125 25 C -0.046 4.046 26 C -0.119 4.119 27 H 0.050 0.950 28 H 0.037 0.963 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.034 0.966 32 H 0.255 0.745 33 H 0.099 0.901 34 H 0.029 0.971 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.399 0.601 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.217 1.149 21.218 23.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.300 5.300 4 C -0.391 4.391 5 H 0.079 0.921 6 C -0.186 4.186 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.212 1.212 10 H -0.217 1.217 11 H -0.201 1.201 12 C 0.010 3.990 13 C -0.027 4.027 14 N -0.368 5.368 15 C 0.296 3.704 16 O -0.414 6.414 17 C -0.128 4.128 18 C -0.006 4.006 19 N -0.239 5.239 20 S 0.339 5.661 21 C -0.254 4.254 22 C -0.105 4.105 23 C -0.106 4.106 24 C -0.145 4.145 25 C -0.069 4.069 26 C -0.131 4.131 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.116 0.884 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.232 0.768 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.150 0.850 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.011 3.550 20.057 22.696 hybrid contribution 0.532 -0.855 -0.074 1.010 sum -9.479 2.694 19.984 22.281 Atomic orbital electron populations 1.22392 0.99926 0.99075 1.01398 1.20879 0.91743 0.86958 0.98898 1.43617 1.76033 1.08294 1.02098 1.19030 1.04769 1.21276 0.93980 0.92066 1.25179 0.94139 1.01171 0.98155 1.69989 1.03161 1.37222 1.42576 0.86392 0.76951 0.82599 0.81479 1.21186 1.21667 1.20140 1.21058 0.94535 0.96943 0.86435 1.22496 1.01140 0.96524 0.82587 1.46082 1.12982 1.53163 1.24598 1.20075 0.85768 0.79246 0.85275 1.90735 1.20505 1.60544 1.69638 1.20551 0.94961 1.00715 0.96554 1.21832 0.95965 0.89651 0.93180 1.75736 1.11437 1.15630 1.21074 1.84785 1.23962 1.13669 1.43707 1.23503 0.99531 0.99659 1.02756 1.19977 0.97269 0.96469 0.96834 1.21044 0.97976 0.93023 0.98592 1.20765 0.94699 1.00467 0.98596 1.20703 0.98759 0.92545 0.94847 1.20111 0.95666 0.96513 1.00820 0.93116 0.94444 0.93700 0.93563 0.94723 0.93501 0.88372 0.95262 0.92947 0.91768 0.76779 0.86315 0.86539 0.84958 0.84767 0.84949 0.84994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 10.21 37.16 0.38 -2.72 16 2 C 0.14 2.92 6.44 -4.04 -0.03 2.89 16 3 N -0.58 -13.92 2.43 -173.24 -0.42 -14.34 16 4 C -0.26 -6.98 9.45 -15.06 -0.14 -7.12 16 5 H 0.06 1.66 7.92 -52.48 -0.42 1.25 16 6 C 0.01 0.38 4.95 -17.43 -0.09 0.29 16 7 N -0.89 -24.52 11.47 55.49 0.64 -23.89 16 8 Si 0.90 21.51 29.60 -169.99 -5.03 16.48 16 9 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.14 2.98 5.45 -4.04 -0.02 2.96 16 13 C 0.10 1.94 6.00 -4.04 -0.02 1.92 16 14 N -0.72 -11.33 5.56 -60.30 -0.33 -11.67 16 15 C 0.51 8.29 7.82 -10.98 -0.09 8.20 16 16 O -0.54 -11.19 16.03 5.56 0.09 -11.10 16 17 C -0.08 -0.97 5.97 -29.04 -0.17 -1.14 16 18 C 0.18 2.57 5.37 -81.24 -0.44 2.14 16 19 N -0.43 -6.67 11.84 34.00 0.40 -6.27 16 20 S 0.18 2.42 23.86 -107.50 -2.56 -0.14 16 21 C -0.13 -1.63 6.71 -38.41 -0.26 -1.89 16 22 C -0.08 -0.76 10.02 -39.93 -0.40 -1.16 16 23 C -0.08 -0.64 10.01 -39.86 -0.40 -1.04 16 24 C -0.12 -1.01 9.92 -40.10 -0.40 -1.40 16 25 C -0.05 -0.46 9.72 -39.24 -0.38 -0.85 16 26 C -0.12 -1.51 6.04 -105.14 -0.64 -2.15 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.04 0.83 6.64 -51.93 -0.34 0.49 16 30 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 31 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 32 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.10 2.40 5.52 -51.93 -0.29 2.11 16 34 H 0.03 0.58 7.86 -51.93 -0.41 0.17 16 35 H 0.05 1.06 6.64 -51.93 -0.34 0.72 16 36 H 0.06 1.50 8.14 -51.93 -0.42 1.07 16 37 H 0.40 5.05 8.47 -40.82 -0.35 4.70 16 38 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.12 0.90 7.54 -51.92 -0.39 0.51 16 40 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 41 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 42 H 0.13 0.71 8.06 -52.48 -0.42 0.28 16 43 H 0.13 1.05 7.64 -52.49 -0.40 0.65 16 LS Contribution 375.40 15.07 5.66 5.66 Total: -1.00 -33.67 375.40 -10.52 -44.18 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -5.86 Total: 2.15 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -3.09 Total: -1.06 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 0.28 Total: -56.16 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.09 Total: -11.10 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -2.56 Total: -0.14 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.67 -10.52 -44.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663457321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.116 kcal (2) G-P(sol) polarization free energy of solvation -33.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds