Wall clock time and date at job start Tue Mar 31 2020 18:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47209 * 2 1 4 4 C 1.36931 * 120.00302 * 275.31320 * 3 2 1 5 5 H 1.08003 * 120.00081 * 37.57615 * 4 3 2 6 6 C 1.38808 * 120.00166 * 217.58011 * 4 3 2 7 7 N 1.31617 * 120.00141 * 21.42100 * 6 4 3 8 8 Si 1.86805 * 119.99979 * 201.42463 * 6 4 3 9 9 H 1.48503 * 109.46923 * 89.99841 * 8 6 4 10 10 H 1.48498 * 109.47236 * 209.99574 * 8 6 4 11 11 H 1.48499 * 109.47000 * 329.99777 * 8 6 4 12 12 C 1.46500 * 119.99696 * 95.31094 * 3 2 1 13 13 C 1.52994 * 109.47252 * 270.00211 * 12 3 2 14 14 N 1.46500 * 109.47252 * 179.97438 * 13 12 3 15 15 C 1.34778 * 120.00066 * 179.97438 * 14 13 12 16 16 O 1.21280 * 119.99972 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99942 * 180.02562 * 15 14 13 18 18 C 1.50692 * 109.47375 * 180.02562 * 17 15 14 19 19 N 1.28734 * 121.08172 * 269.72044 * 18 17 15 20 20 S 1.69388 * 108.98326 * 179.89916 * 19 18 17 21 21 C 1.76508 * 96.12381 * 0.30656 * 20 19 18 22 22 C 1.38781 * 133.56217 * 179.82945 * 21 20 19 23 23 C 1.36716 * 119.76175 * 179.97438 * 22 21 20 24 24 C 1.38968 * 120.14874 * 0.02562 * 23 22 21 25 25 C 1.36042 * 121.16435 * 0.02562 * 24 23 22 26 26 C 1.40809 * 105.51368 * 359.83005 * 21 20 19 27 27 H 1.09000 * 109.47357 * 59.99747 * 1 2 3 28 28 H 1.08997 * 109.46935 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46743 * 299.99585 * 1 2 3 30 30 H 1.09005 * 109.46743 * 240.00415 * 2 1 3 31 31 H 1.09000 * 109.47357 * 120.00253 * 2 1 3 32 32 H 0.96999 * 119.99936 * 180.02562 * 7 6 4 33 33 H 1.09002 * 109.46805 * 150.00107 * 12 3 2 34 34 H 1.09002 * 109.46958 * 30.00193 * 12 3 2 35 35 H 1.09002 * 109.47301 * 60.00199 * 13 12 3 36 36 H 1.09002 * 109.47124 * 299.99879 * 13 12 3 37 37 H 0.97005 * 119.99797 * 0.02562 * 14 13 12 38 38 H 1.08995 * 109.47206 * 59.99514 * 17 15 14 39 39 H 1.09007 * 109.47158 * 300.00027 * 17 15 14 40 40 H 1.08003 * 120.12107 * 359.97438 * 22 21 20 41 41 H 1.07997 * 119.92704 * 179.97438 * 23 22 21 42 42 H 1.08003 * 119.42030 * 180.02562 * 24 23 22 43 43 H 1.07990 * 119.90079 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1431 2.0634 -1.1807 5 1 1.4105 1.9279 -1.9627 6 6 3.2111 2.9289 -1.3728 7 7 4.3026 2.7981 -0.6490 8 14 3.0993 4.2796 -2.6584 9 1 2.5375 5.5070 -2.0392 10 1 4.4548 4.5697 -3.1908 11 1 2.2165 3.8358 -3.7670 12 6 2.3732 2.0326 1.2633 13 6 1.1427 2.7381 1.8367 14 7 1.4974 3.3890 3.1003 15 6 0.5650 4.0764 3.7893 16 8 -0.5678 4.1557 3.3634 17 6 0.9301 4.7464 5.0888 18 6 -0.2820 5.4412 5.6537 19 7 -0.5435 6.6665 5.3582 20 16 -1.9651 7.1334 6.1521 21 6 -2.2476 5.5880 6.9567 22 6 -3.2307 5.1248 7.8199 23 6 -3.1744 3.8408 8.2862 24 6 -2.1365 3.0022 7.8980 25 6 -1.1609 3.4338 7.0537 26 6 -1.1882 4.7535 6.5520 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 5.0488 3.4032 -0.7830 33 1 3.1617 2.7641 1.0860 34 1 2.7255 1.2832 1.9721 35 1 0.3542 2.0067 2.0140 36 1 0.7904 3.4876 1.1279 37 1 2.4036 3.3259 3.4407 38 1 1.7188 5.4775 4.9117 39 1 1.2821 3.9968 5.7978 40 1 -4.0373 5.7763 8.1223 41 1 -3.9377 3.4777 8.9583 42 1 -2.1038 1.9899 8.2731 43 1 -0.3635 2.7649 6.7657 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663457321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:46 Heat of formation + Delta-G solvation = 8.795244 kcal Electronic energy + Delta-G solvation = -25449.455457 eV Core-core repulsion = 21813.447463 eV Total energy + Delta-G solvation = -3636.007994 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.35388 -40.32568 -38.18728 -37.67294 -35.62897 -33.83996 -32.56364 -31.80262 -31.47082 -30.78546 -29.01345 -26.17098 -24.68913 -23.93108 -23.43073 -22.18691 -22.02418 -20.85973 -19.56892 -18.78232 -17.99943 -17.43081 -17.18372 -16.96525 -16.46231 -16.26118 -16.02029 -15.73910 -15.49485 -15.42555 -14.96543 -14.62611 -14.46665 -14.36563 -14.10584 -13.81091 -13.32774 -13.23806 -13.08654 -13.03582 -12.87677 -12.66583 -12.60843 -12.38267 -12.29499 -12.04205 -11.79315 -11.67141 -11.62758 -11.50703 -11.11273 -10.79481 -10.55931 -10.04651 -9.97913 -8.96628 -8.60460 -7.87244 -5.49678 -0.54013 0.19189 0.35733 0.68962 1.00016 1.41335 1.46364 1.52062 1.58027 2.23255 2.48916 2.66219 3.16878 3.20526 3.43738 3.69245 3.83344 3.99526 4.05061 4.19809 4.28720 4.33379 4.36519 4.44504 4.46675 4.48290 4.63656 4.76369 4.82752 4.85438 4.92380 5.03229 5.09062 5.23904 5.25587 5.29562 5.41406 5.41742 5.52791 5.56760 5.66063 5.75518 5.83794 6.44030 6.57729 7.14078 7.24507 7.82884 8.33794 9.08138 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015811 B = 0.002733 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.484482 B =10243.983640 C =11264.578585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 N -0.598 5.598 4 C -0.269 4.269 5 H 0.050 0.950 6 C -0.026 4.026 7 N -0.908 5.908 8 Si 0.947 3.053 9 H -0.293 1.293 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.145 3.855 13 C 0.120 3.880 14 N -0.707 5.707 15 C 0.515 3.485 16 O -0.588 6.588 17 C -0.074 4.074 18 C 0.177 3.823 19 N -0.472 5.472 20 S 0.155 5.845 21 C -0.148 4.148 22 C -0.094 4.094 23 C -0.071 4.071 24 C -0.121 4.121 25 C -0.057 4.057 26 C -0.148 4.148 27 H 0.031 0.969 28 H 0.070 0.930 29 H 0.041 0.959 30 H 0.036 0.964 31 H 0.056 0.944 32 H 0.254 0.746 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.022 0.978 37 H 0.417 0.583 38 H 0.135 0.865 39 H 0.164 0.836 40 H 0.152 0.848 41 H 0.173 0.827 42 H 0.167 0.833 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.774 -0.808 23.672 25.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.012 3.988 3 N -0.320 5.320 4 C -0.400 4.400 5 H 0.067 0.933 6 C -0.225 4.225 7 N -0.551 5.551 8 Si 0.775 3.225 9 H -0.220 1.220 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.018 3.982 13 C -0.006 4.006 14 N -0.359 5.359 15 C 0.301 3.699 16 O -0.468 6.468 17 C -0.118 4.118 18 C -0.013 4.013 19 N -0.284 5.284 20 S 0.310 5.690 21 C -0.269 4.269 22 C -0.117 4.117 23 C -0.093 4.093 24 C -0.140 4.140 25 C -0.079 4.079 26 C -0.159 4.159 27 H 0.050 0.950 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.040 0.960 37 H 0.254 0.746 38 H 0.153 0.847 39 H 0.181 0.819 40 H 0.170 0.830 41 H 0.191 0.809 42 H 0.184 0.816 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -10.542 1.580 22.534 24.928 hybrid contribution 0.613 -0.378 -0.737 1.030 sum -9.929 1.202 21.796 23.982 Atomic orbital electron populations 1.22223 0.98128 1.00854 1.00258 1.21014 0.93033 0.85348 0.99428 1.43868 1.76362 1.09713 1.02018 1.19137 1.04271 1.21771 0.94815 0.93280 1.25696 0.94096 1.02699 0.99961 1.70063 1.03467 1.37802 1.43755 0.85602 0.76842 0.80184 0.79841 1.21995 1.21326 1.19716 1.20939 0.94221 0.96859 0.86185 1.21927 1.00087 0.95187 0.83421 1.45865 1.14067 1.52795 1.23182 1.20754 0.84747 0.78243 0.86181 1.90717 1.22732 1.62210 1.71128 1.20636 0.94642 1.01739 0.94758 1.22280 0.96563 0.89458 0.92977 1.75682 1.12859 1.17026 1.22788 1.84608 1.24046 1.15527 1.44788 1.23730 1.00755 0.98567 1.03806 1.20393 0.97146 0.97782 0.96351 1.21563 0.98236 0.91887 0.97629 1.21260 0.93656 1.01977 0.97149 1.21061 1.00111 0.91598 0.95126 1.20337 0.95955 0.97903 1.01709 0.95017 0.91144 0.94015 0.94554 0.92585 0.93660 0.90930 0.93034 0.93115 0.95987 0.74647 0.84736 0.81879 0.82988 0.80949 0.81559 0.83126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.50 10.21 71.98 0.73 -4.76 16 2 C 0.14 5.50 6.44 86.38 0.56 6.05 16 3 N -0.60 -28.69 2.43 -702.00 -1.71 -30.40 16 4 C -0.27 -14.61 9.45 84.03 0.79 -13.82 16 5 H 0.05 2.73 7.92 -2.91 -0.02 2.71 16 6 C -0.03 -1.43 4.95 84.86 0.42 -1.01 16 7 N -0.91 -50.50 11.47 21.65 0.25 -50.25 16 8 Si 0.95 44.85 29.60 68.60 2.03 46.88 16 9 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 10 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 11 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 12 C 0.15 6.23 5.45 86.38 0.47 6.70 16 13 C 0.12 4.80 6.00 86.38 0.52 5.32 16 14 N -0.71 -21.70 5.56 -463.06 -2.57 -24.27 16 15 C 0.52 16.32 7.82 87.66 0.69 17.01 16 16 O -0.59 -24.88 16.03 -3.03 -0.05 -24.93 16 17 C -0.07 -1.61 5.97 29.10 0.17 -1.43 16 18 C 0.18 4.92 5.37 44.73 0.24 5.16 16 19 N -0.47 -15.26 11.84 -46.35 -0.55 -15.81 16 20 S 0.15 4.30 23.86 -56.49 -1.35 2.95 16 21 C -0.15 -3.55 6.71 23.03 0.15 -3.40 16 22 C -0.09 -1.54 10.02 22.04 0.22 -1.32 16 23 C -0.07 -0.80 10.01 22.09 0.22 -0.58 16 24 C -0.12 -1.45 9.92 21.93 0.22 -1.24 16 25 C -0.06 -0.98 9.72 22.49 0.22 -0.76 16 26 C -0.15 -3.60 6.04 -20.20 -0.12 -3.72 16 27 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.07 2.01 8.14 -2.39 -0.02 2.00 16 29 H 0.04 1.49 6.64 -2.38 -0.02 1.47 16 30 H 0.04 1.51 8.08 -2.38 -0.02 1.49 16 31 H 0.06 2.00 7.83 -2.39 -0.02 1.98 16 32 H 0.25 13.67 8.31 -92.71 -0.77 12.90 16 33 H 0.07 3.56 5.52 -2.39 -0.01 3.55 16 34 H 0.05 1.96 7.86 -2.39 -0.02 1.94 16 35 H 0.05 2.04 6.64 -2.39 -0.02 2.03 16 36 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.42 9.80 8.47 -92.70 -0.79 9.01 16 38 H 0.13 2.54 8.14 -2.39 -0.02 2.52 16 39 H 0.16 1.95 7.54 -2.38 -0.02 1.94 16 40 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 41 H 0.17 0.62 8.06 -2.91 -0.02 0.60 16 42 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 43 H 0.15 1.88 7.64 -2.92 -0.02 1.85 16 Total: -1.00 -76.62 375.40 1.81 -74.81 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.25 Total: 12.81 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 5.50 Total: 8.21 kcal Atomic # 7 Polarization: -116.15 SS G_CDS: -4.58 Total: -120.73 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.05 Total: -24.93 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 16 Polarization: 4.30 SS G_CDS: -1.35 Total: 2.95 kcal Total: -76.62 1.81 -74.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663457321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.606 kcal (2) G-P(sol) polarization free energy of solvation -76.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds