Wall clock time and date at job start Tue Mar 31 2020 17:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46753 * 2 1 4 4 N 1.46508 * 109.47039 * 179.97438 * 3 2 1 5 5 C 1.36939 * 119.99751 * 270.00314 * 4 3 2 6 6 H 1.08000 * 120.00292 * 38.12960 * 5 4 3 7 7 C 1.38812 * 119.99654 * 218.13194 * 5 4 3 8 8 N 1.31616 * 119.99839 * 21.27636 * 7 5 4 9 9 Si 1.86795 * 120.00012 * 201.28170 * 7 5 4 10 10 H 1.48492 * 109.47282 * 59.99547 * 9 7 5 11 11 H 1.48505 * 109.47247 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.46844 * 299.99533 * 9 7 5 13 13 C 1.46496 * 119.99807 * 89.99866 * 4 3 2 14 14 C 1.53002 * 109.47279 * 264.50276 * 13 4 3 15 15 N 1.46496 * 109.47042 * 180.02562 * 14 13 4 16 16 C 1.34774 * 119.99741 * 180.02562 * 15 14 13 17 17 O 1.21554 * 120.00273 * 359.97438 * 16 15 14 18 18 C 1.47880 * 120.00060 * 179.97438 * 16 15 14 19 19 N 1.32460 * 119.74880 * 0.02562 * 18 16 15 20 20 C 1.31759 * 121.98302 * 180.02562 * 19 18 16 21 21 C 1.37676 * 121.49133 * 0.02562 * 20 19 18 22 22 C 1.41117 * 119.39292 * 359.97438 * 21 20 19 23 23 C 1.44982 * 130.46996 * 180.02562 * 22 21 20 24 24 C 1.32007 * 114.84541 * 180.02562 * 23 22 21 25 25 S 1.75352 * 111.45595 * 0.02562 * 24 23 22 26 26 C 1.40254 * 117.62865 * 0.02562 * 22 21 20 27 27 H 1.09004 * 109.46633 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47467 * 299.99953 * 1 2 3 29 29 H 1.08999 * 109.46851 * 60.00446 * 1 2 3 30 30 H 1.08996 * 109.47467 * 240.00047 * 2 1 3 31 31 H 1.08999 * 109.46851 * 119.99554 * 2 1 3 32 32 H 1.08996 * 109.47095 * 59.99820 * 3 2 1 33 33 H 1.08999 * 109.47078 * 299.99415 * 3 2 1 34 34 H 0.97010 * 120.00098 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.46839 * 144.50400 * 13 4 3 36 36 H 1.09002 * 109.47395 * 24.50201 * 13 4 3 37 37 H 1.09003 * 109.46956 * 59.99765 * 14 13 4 38 38 H 1.09002 * 109.46846 * 300.00261 * 14 13 4 39 39 H 0.96991 * 120.00363 * 359.97438 * 15 14 13 40 40 H 1.07994 * 119.25670 * 180.02562 * 20 19 18 41 41 H 1.08001 * 120.30736 * 179.97438 * 21 20 19 42 42 H 1.08000 * 122.57688 * 359.73158 * 23 22 21 43 43 H 1.07995 * 124.27049 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5050 1.4427 0.0006 5 6 4.1891 1.4428 1.1869 6 1 3.8217 0.8654 2.0223 7 6 5.3550 2.1852 1.3155 8 7 5.5886 3.1903 0.4985 9 14 6.5922 1.7577 2.6481 10 1 7.0727 0.3667 2.4496 11 1 7.7428 2.6936 2.5740 12 1 5.9449 1.8726 3.9797 13 6 4.2380 1.4425 -1.2678 14 6 4.6129 0.0066 -1.6400 15 7 5.3464 0.0065 -2.9081 16 6 5.7801 -1.1554 -3.4356 17 8 5.5630 -2.2032 -2.8590 18 6 6.5200 -1.1556 -4.7160 19 7 6.7543 -0.0109 -5.3399 20 6 7.4084 0.0400 -6.4826 21 6 7.8841 -1.1001 -7.0903 22 6 7.6684 -2.3530 -6.4778 23 6 8.0574 -3.6850 -6.8976 24 6 7.6909 -4.6537 -6.0792 25 16 6.8197 -4.0265 -4.6926 26 6 6.9686 -2.3709 -5.2625 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6765 1.9564 0.8899 33 1 1.6766 1.9564 -0.8900 34 1 6.4032 3.7094 0.5886 35 1 5.1441 2.0393 -1.1638 36 1 3.6101 1.8685 -2.0504 37 1 3.7067 -0.5902 -1.7439 38 1 5.2407 -0.4195 -0.8574 39 1 5.5193 0.8425 -3.3685 40 1 7.5751 0.9977 -6.9531 41 1 8.4176 -1.0362 -8.0272 42 1 8.6010 -3.8710 -7.8121 43 1 7.9003 -5.7004 -6.2433 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663667881.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:24 Heat of formation + Delta-G solvation = 35.838824 kcal Electronic energy + Delta-G solvation = -25584.772925 eV Core-core repulsion = 21949.937629 eV Total energy + Delta-G solvation = -3634.835296 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.69947 -38.89113 -36.46541 -36.20824 -34.25958 -32.86842 -31.80774 -30.72079 -30.51712 -28.20152 -25.54769 -24.90954 -24.51662 -23.15992 -21.64982 -20.94775 -20.38147 -19.96352 -18.42751 -17.45388 -16.78401 -16.50702 -15.41976 -15.35901 -15.13188 -14.92749 -14.88791 -14.38468 -14.31962 -14.13578 -13.79330 -13.54481 -12.97863 -12.86393 -12.76258 -12.58017 -12.29039 -12.06213 -11.57398 -11.47891 -11.15513 -10.99276 -10.90963 -10.71259 -10.44481 -10.33465 -10.16004 -10.06008 -10.03750 -9.86905 -9.75981 -9.55858 -9.36803 -8.57666 -8.46305 -7.96542 -6.59593 -5.79693 -3.41409 0.19774 0.60332 1.30867 1.86414 1.91075 2.88802 3.32930 3.39720 3.43676 3.47828 3.74385 4.11688 4.20926 4.46259 4.51300 4.67633 4.93182 5.12655 5.19772 5.26009 5.31245 5.49374 5.51100 5.67761 5.76015 5.77584 5.95522 6.03790 6.14226 6.20822 6.26063 6.31023 6.43991 6.54724 6.63555 6.68749 6.84491 6.99073 7.03660 7.18798 7.49106 7.59962 7.82590 7.94100 8.46040 8.51194 9.16505 9.78420 10.36536 11.18622 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012378 B = 0.003098 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.529670 B = 9034.812252 C = 9739.313469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.146 4.146 3 C 0.148 3.852 4 N -0.579 5.579 5 C -0.264 4.264 6 H 0.061 0.939 7 C 0.016 3.984 8 N -0.885 5.885 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.280 1.280 13 C 0.135 3.865 14 C 0.096 3.904 15 N -0.691 5.691 16 C 0.556 3.444 17 O -0.533 6.533 18 C 0.140 3.860 19 N -0.442 5.442 20 C 0.083 3.917 21 C -0.114 4.114 22 C -0.047 4.047 23 C -0.133 4.133 24 C -0.204 4.204 25 S 0.196 5.804 26 C -0.167 4.167 27 H 0.042 0.958 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.032 0.968 34 H 0.256 0.744 35 H 0.099 0.901 36 H 0.031 0.969 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.409 0.591 40 H 0.168 0.832 41 H 0.143 0.857 42 H 0.147 0.853 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.374 -10.264 -17.488 20.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.186 4.186 3 C 0.021 3.979 4 N -0.298 5.298 5 C -0.393 4.393 6 H 0.079 0.921 7 C -0.185 4.185 8 N -0.527 5.527 9 Si 0.725 3.275 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.206 1.206 13 C 0.008 3.992 14 C -0.028 4.028 15 N -0.340 5.340 16 C 0.339 3.661 17 O -0.411 6.411 18 C -0.011 4.011 19 N -0.154 5.154 20 C -0.072 4.072 21 C -0.135 4.135 22 C -0.063 4.063 23 C -0.163 4.163 24 C -0.340 4.340 25 S 0.460 5.540 26 C -0.286 4.286 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.116 0.884 36 H 0.049 0.951 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.244 0.756 40 H 0.185 0.815 41 H 0.161 0.839 42 H 0.165 0.835 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 2.381 -10.760 -15.403 18.939 hybrid contribution 1.882 0.015 -1.333 2.306 sum 4.263 -10.745 -16.736 20.340 Atomic orbital electron populations 1.21720 0.97338 1.00376 1.01016 1.22207 0.93838 1.01017 1.01502 1.20954 0.85035 0.92855 0.99020 1.43588 0.99402 1.85070 1.01778 1.18968 1.06236 1.22828 0.91312 0.92140 1.25184 1.00783 0.94605 0.97913 1.69961 1.26039 1.16979 1.39709 0.86489 0.81072 0.78055 0.81922 1.20774 1.21583 1.20597 1.21076 0.99690 0.91594 0.86867 1.22544 0.94952 1.02766 0.82573 1.45973 1.54868 1.08572 1.24630 1.17783 0.79824 0.84976 0.83519 1.90761 1.57815 1.31309 1.61183 1.20835 0.97623 0.86948 0.95651 1.67627 1.12059 1.26731 1.08980 1.22520 0.94728 0.98692 0.91240 1.22100 0.99689 0.91014 1.00741 1.19507 0.98346 0.94754 0.93652 1.20753 1.04161 0.89457 1.01917 1.25795 1.03920 1.03891 1.00373 1.85139 1.55152 0.93393 1.20317 1.23689 1.05041 0.99931 0.99939 0.93837 0.93195 0.93458 0.93001 0.92379 0.93253 0.94950 0.93438 0.88381 0.95059 0.92642 0.91302 0.75596 0.81507 0.83897 0.83496 0.81163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.91 37.16 0.37 -1.82 16 2 C -0.15 -2.67 6.26 -26.73 -0.17 -2.84 16 3 C 0.15 3.09 5.71 -4.03 -0.02 3.06 16 4 N -0.58 -14.08 2.43 -173.23 -0.42 -14.50 16 5 C -0.26 -7.10 9.42 -15.06 -0.14 -7.24 16 6 H 0.06 1.64 7.92 -52.49 -0.42 1.22 16 7 C 0.02 0.43 5.00 -17.43 -0.09 0.35 16 8 N -0.89 -24.87 11.43 55.49 0.63 -24.23 16 9 Si 0.90 21.61 29.60 -169.99 -5.03 16.58 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.14 3.06 5.50 -4.04 -0.02 3.03 16 14 C 0.10 2.03 5.97 -4.04 -0.02 2.00 16 15 N -0.69 -12.79 5.54 -61.24 -0.34 -13.13 16 16 C 0.56 10.35 7.80 -12.31 -0.10 10.26 16 17 O -0.53 -11.07 15.03 5.32 0.08 -10.99 16 18 C 0.14 2.23 6.78 -82.76 -0.56 1.67 16 19 N -0.44 -6.26 9.51 -9.79 -0.09 -6.35 16 20 C 0.08 0.87 11.12 -17.79 -0.20 0.67 16 21 C -0.11 -1.06 10.18 -38.70 -0.39 -1.45 16 22 C -0.05 -0.53 6.10 -105.38 -0.64 -1.18 16 23 C -0.13 -1.20 10.39 -38.83 -0.40 -1.60 16 24 C -0.20 -1.87 11.02 28.82 0.32 -1.55 16 25 S 0.20 2.54 21.43 -107.50 -2.30 0.24 16 26 C -0.17 -2.40 6.33 -37.93 -0.24 -2.64 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.97 6.66 -51.93 -0.35 0.63 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.05 1.06 8.04 -51.93 -0.42 0.64 16 33 H 0.03 0.64 7.86 -51.93 -0.41 0.23 16 34 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.10 2.50 5.53 -51.93 -0.29 2.21 16 36 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 37 H 0.06 1.17 6.66 -51.93 -0.35 0.82 16 38 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 39 H 0.41 6.95 7.80 -40.82 -0.32 6.63 16 40 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 41 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 43 H 0.17 1.02 8.06 -52.49 -0.42 0.59 16 LS Contribution 373.32 15.07 5.63 5.63 Total: -1.00 -31.25 373.32 -10.05 -41.29 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -5.88 Total: 4.73 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -2.31 Total: 0.73 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: -0.22 Total: -58.21 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.08 Total: -10.99 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Atomic # 16 Polarization: 2.54 SS G_CDS: -2.30 Total: 0.24 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.25 -10.05 -41.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663667881.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.133 kcal (2) G-P(sol) polarization free energy of solvation -31.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds