Wall clock time and date at job start Tue Mar 31 2020 17:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46753 * 2 1 4 4 N 1.46508 * 109.47039 * 179.97438 * 3 2 1 5 5 C 1.36939 * 119.99751 * 270.00314 * 4 3 2 6 6 H 1.08000 * 120.00292 * 38.12960 * 5 4 3 7 7 C 1.38812 * 119.99654 * 218.13194 * 5 4 3 8 8 N 1.31616 * 119.99839 * 21.27636 * 7 5 4 9 9 Si 1.86795 * 120.00012 * 201.28170 * 7 5 4 10 10 H 1.48492 * 109.47282 * 59.99547 * 9 7 5 11 11 H 1.48505 * 109.47247 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.46844 * 299.99533 * 9 7 5 13 13 C 1.46496 * 119.99807 * 89.99866 * 4 3 2 14 14 C 1.53002 * 109.47279 * 264.50276 * 13 4 3 15 15 N 1.46496 * 109.47042 * 180.02562 * 14 13 4 16 16 C 1.34774 * 119.99741 * 180.02562 * 15 14 13 17 17 O 1.21554 * 120.00273 * 359.97438 * 16 15 14 18 18 C 1.47880 * 120.00060 * 179.97438 * 16 15 14 19 19 N 1.32460 * 119.74880 * 0.02562 * 18 16 15 20 20 C 1.31759 * 121.98302 * 180.02562 * 19 18 16 21 21 C 1.37676 * 121.49133 * 0.02562 * 20 19 18 22 22 C 1.41117 * 119.39292 * 359.97438 * 21 20 19 23 23 C 1.44982 * 130.46996 * 180.02562 * 22 21 20 24 24 C 1.32007 * 114.84541 * 180.02562 * 23 22 21 25 25 S 1.75352 * 111.45595 * 0.02562 * 24 23 22 26 26 C 1.40254 * 117.62865 * 0.02562 * 22 21 20 27 27 H 1.09004 * 109.46633 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47467 * 299.99953 * 1 2 3 29 29 H 1.08999 * 109.46851 * 60.00446 * 1 2 3 30 30 H 1.08996 * 109.47467 * 240.00047 * 2 1 3 31 31 H 1.08999 * 109.46851 * 119.99554 * 2 1 3 32 32 H 1.08996 * 109.47095 * 59.99820 * 3 2 1 33 33 H 1.08999 * 109.47078 * 299.99415 * 3 2 1 34 34 H 0.97010 * 120.00098 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.46839 * 144.50400 * 13 4 3 36 36 H 1.09002 * 109.47395 * 24.50201 * 13 4 3 37 37 H 1.09003 * 109.46956 * 59.99765 * 14 13 4 38 38 H 1.09002 * 109.46846 * 300.00261 * 14 13 4 39 39 H 0.96991 * 120.00363 * 359.97438 * 15 14 13 40 40 H 1.07994 * 119.25670 * 180.02562 * 20 19 18 41 41 H 1.08001 * 120.30736 * 179.97438 * 21 20 19 42 42 H 1.08000 * 122.57688 * 359.73158 * 23 22 21 43 43 H 1.07995 * 124.27049 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5050 1.4427 0.0006 5 6 4.1891 1.4428 1.1869 6 1 3.8217 0.8654 2.0223 7 6 5.3550 2.1852 1.3155 8 7 5.5886 3.1903 0.4985 9 14 6.5922 1.7577 2.6481 10 1 7.0727 0.3667 2.4496 11 1 7.7428 2.6936 2.5740 12 1 5.9449 1.8726 3.9797 13 6 4.2380 1.4425 -1.2678 14 6 4.6129 0.0066 -1.6400 15 7 5.3464 0.0065 -2.9081 16 6 5.7801 -1.1554 -3.4356 17 8 5.5630 -2.2032 -2.8590 18 6 6.5200 -1.1556 -4.7160 19 7 6.7543 -0.0109 -5.3399 20 6 7.4084 0.0400 -6.4826 21 6 7.8841 -1.1001 -7.0903 22 6 7.6684 -2.3530 -6.4778 23 6 8.0574 -3.6850 -6.8976 24 6 7.6909 -4.6537 -6.0792 25 16 6.8197 -4.0265 -4.6926 26 6 6.9686 -2.3709 -5.2625 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6765 1.9564 0.8899 33 1 1.6766 1.9564 -0.8900 34 1 6.4032 3.7094 0.5886 35 1 5.1441 2.0393 -1.1638 36 1 3.6101 1.8685 -2.0504 37 1 3.7067 -0.5902 -1.7439 38 1 5.2407 -0.4195 -0.8574 39 1 5.5193 0.8425 -3.3685 40 1 7.5751 0.9977 -6.9531 41 1 8.4176 -1.0362 -8.0272 42 1 8.6010 -3.8710 -7.8121 43 1 7.9003 -5.7004 -6.2433 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663667881.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:22 Heat of formation + Delta-G solvation = 16.557721 kcal Electronic energy + Delta-G solvation = -25585.609017 eV Core-core repulsion = 21949.937629 eV Total energy + Delta-G solvation = -3635.671388 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.73894 -40.23474 -38.26134 -37.05528 -35.83070 -34.61899 -32.93789 -32.41092 -31.38559 -29.85536 -27.35370 -26.20044 -25.36503 -24.69000 -22.77978 -22.44459 -21.89691 -21.39631 -19.50325 -18.80085 -18.24317 -17.69580 -17.07224 -16.80189 -16.60984 -16.07874 -15.98197 -15.77912 -15.69621 -15.17037 -15.08248 -15.03462 -14.64738 -14.32740 -14.21923 -13.61928 -13.37153 -13.19696 -13.07332 -12.92163 -12.90992 -12.66275 -12.53105 -12.27329 -12.04502 -11.94317 -11.88297 -11.72973 -11.35620 -11.22815 -10.94984 -10.81666 -10.55639 -10.22186 -10.14065 -8.91783 -8.60482 -7.85077 -5.51256 -0.71652 -0.31307 0.39912 1.04908 1.09915 1.41990 1.46262 1.51789 1.72216 1.98777 2.48142 2.69474 3.04303 3.21553 3.45531 3.59051 3.71654 3.78587 4.15398 4.20534 4.28498 4.33678 4.35202 4.43309 4.50697 4.56910 4.66876 4.69807 4.79718 4.84589 4.98379 5.01689 5.12418 5.20469 5.24542 5.25239 5.31571 5.42708 5.45806 5.61382 5.62959 5.73155 6.33057 6.44698 6.69617 7.02762 7.13939 7.80713 8.33606 9.08675 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012378 B = 0.003098 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.529670 B = 9034.812252 C = 9739.313469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.145 3.855 4 N -0.595 5.595 5 C -0.273 4.273 6 H 0.053 0.947 7 C -0.026 4.026 8 N -0.908 5.908 9 Si 0.949 3.051 10 H -0.288 1.288 11 H -0.288 1.288 12 H -0.271 1.271 13 C 0.144 3.856 14 C 0.121 3.879 15 N -0.691 5.691 16 C 0.552 3.448 17 O -0.564 6.564 18 C 0.102 3.898 19 N -0.458 5.458 20 C 0.074 3.926 21 C -0.084 4.084 22 C -0.057 4.057 23 C -0.123 4.123 24 C -0.189 4.189 25 S 0.118 5.882 26 C -0.182 4.182 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.039 0.961 32 H 0.041 0.959 33 H 0.046 0.954 34 H 0.254 0.746 35 H 0.072 0.928 36 H 0.047 0.953 37 H 0.053 0.947 38 H 0.033 0.967 39 H 0.415 0.585 40 H 0.206 0.794 41 H 0.194 0.806 42 H 0.192 0.808 43 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.383 -10.816 -20.713 23.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.175 4.175 3 C 0.020 3.980 4 N -0.316 5.316 5 C -0.403 4.403 6 H 0.070 0.930 7 C -0.224 4.224 8 N -0.551 5.551 9 Si 0.777 3.223 10 H -0.215 1.215 11 H -0.214 1.214 12 H -0.197 1.197 13 C 0.017 3.983 14 C -0.005 4.005 15 N -0.341 5.341 16 C 0.337 3.663 17 O -0.444 6.444 18 C -0.047 4.047 19 N -0.171 5.171 20 C -0.082 4.082 21 C -0.105 4.105 22 C -0.073 4.073 23 C -0.152 4.152 24 C -0.323 4.323 25 S 0.382 5.618 26 C -0.302 4.302 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.051 0.949 39 H 0.252 0.748 40 H 0.222 0.778 41 H 0.211 0.789 42 H 0.209 0.791 43 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 3.374 -11.322 -18.638 22.067 hybrid contribution 1.618 0.182 -0.514 1.707 sum 4.992 -11.140 -19.152 22.711 Atomic orbital electron populations 1.21651 0.94166 1.01795 1.02033 1.22030 0.96517 0.98720 1.00231 1.21075 0.83193 0.94535 0.99186 1.43816 1.00887 1.85351 1.01528 1.19123 1.06852 1.22293 0.92056 0.92976 1.25761 1.02081 0.94690 0.99907 1.70059 1.26252 1.17741 1.41083 0.85645 0.79215 0.77176 0.80280 1.21502 1.21362 1.19658 1.20909 0.98728 0.91884 0.86798 1.22010 0.94242 1.01344 0.82901 1.45810 1.55163 1.09288 1.23824 1.18307 0.79300 0.84136 0.84512 1.90729 1.58931 1.32205 1.62494 1.20292 1.00437 0.88521 0.95414 1.67543 1.12818 1.26210 1.10529 1.23265 0.93801 1.01023 0.90114 1.22683 0.97071 0.89343 1.01412 1.20075 0.97757 0.96906 0.92604 1.21172 1.03294 0.87791 1.02910 1.26036 1.02777 1.05628 0.97899 1.85329 1.57672 0.94625 1.24192 1.23831 1.05824 0.99209 1.01311 0.92243 0.92497 0.92122 0.93723 0.94221 0.94094 0.93607 0.93702 0.90985 0.93485 0.92906 0.94876 0.74776 0.77783 0.78862 0.79106 0.77752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 9.91 71.98 0.71 -3.21 16 2 C -0.14 -4.99 6.26 30.60 0.19 -4.80 16 3 C 0.15 6.15 5.71 86.38 0.49 6.64 16 4 N -0.60 -29.86 2.43 -701.98 -1.71 -31.56 16 5 C -0.27 -15.16 9.42 84.03 0.79 -14.37 16 6 H 0.05 2.93 7.92 -2.91 -0.02 2.90 16 7 C -0.03 -1.45 5.00 84.86 0.42 -1.03 16 8 N -0.91 -52.33 11.43 21.65 0.25 -52.09 16 9 Si 0.95 45.55 29.60 68.60 2.03 47.58 16 10 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 11 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 12 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 13 C 0.14 6.76 5.50 86.38 0.47 7.24 16 14 C 0.12 5.38 5.97 86.38 0.52 5.89 16 15 N -0.69 -27.06 5.54 -465.93 -2.58 -29.64 16 16 C 0.55 21.86 7.80 86.80 0.68 22.54 16 17 O -0.56 -25.19 15.03 -3.89 -0.06 -25.25 16 18 C 0.10 3.33 6.78 42.18 0.29 3.62 16 19 N -0.46 -12.74 9.51 -184.87 -1.76 -14.50 16 20 C 0.07 1.33 11.12 84.57 0.94 2.27 16 21 C -0.08 -1.19 10.18 22.84 0.23 -0.96 16 22 C -0.06 -1.14 6.10 -20.35 -0.12 -1.27 16 23 C -0.12 -1.71 10.39 23.09 0.24 -1.47 16 24 C -0.19 -2.97 11.02 66.91 0.74 -2.24 16 25 S 0.12 3.17 21.43 -56.49 -1.21 1.96 16 26 C -0.18 -5.24 6.33 23.34 0.15 -5.09 16 27 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 28 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.04 1.70 6.66 -2.39 -0.02 1.68 16 31 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.04 1.77 8.04 -2.39 -0.02 1.76 16 33 H 0.05 1.80 7.86 -2.39 -0.02 1.78 16 34 H 0.25 14.16 8.31 -92.70 -0.77 13.39 16 35 H 0.07 3.83 5.53 -2.39 -0.01 3.82 16 36 H 0.05 2.02 7.83 -2.39 -0.02 2.00 16 37 H 0.05 2.35 6.66 -2.39 -0.02 2.34 16 38 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.42 14.84 7.80 -92.71 -0.72 14.12 16 40 H 0.21 1.98 8.06 -2.91 -0.02 1.96 16 41 H 0.19 0.79 8.06 -2.91 -0.02 0.77 16 42 H 0.19 1.02 8.06 -2.91 -0.02 1.00 16 43 H 0.21 1.70 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -72.88 373.32 2.01 -70.86 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 0.31 Total: 18.87 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: 6.74 Total: 13.77 kcal Atomic # 7 Polarization: -121.99 SS G_CDS: -5.80 Total: -127.79 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.06 Total: -25.25 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -1.21 Total: 1.96 kcal Total: -72.88 2.01 -70.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663667881.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.420 kcal (2) G-P(sol) polarization free energy of solvation -72.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds