Wall clock time and date at job start Tue Mar 31 2020 17:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47019 * 2 1 4 4 N 1.46498 * 109.46763 * 180.02562 * 3 2 1 5 5 C 1.36939 * 120.00106 * 179.97438 * 4 3 2 6 6 H 1.08004 * 119.99906 * 0.02562 * 5 4 3 7 7 C 1.38814 * 120.00496 * 179.97438 * 5 4 3 8 8 N 1.31616 * 119.99626 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00119 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47454 * 60.00052 * 9 7 5 11 11 H 1.48498 * 109.47049 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47015 * 299.99908 * 9 7 5 13 13 N 1.46498 * 109.47082 * 120.00413 * 2 1 3 14 14 C 1.34778 * 119.99615 * 304.29429 * 13 2 1 15 15 O 1.21725 * 120.00074 * 354.98596 * 14 13 2 16 16 C 1.46494 * 119.99903 * 174.98605 * 14 13 2 17 17 C 1.36114 * 125.70882 * 179.97438 * 16 14 13 18 18 C 1.42229 * 107.62440 * 179.73860 * 17 16 14 19 19 C 1.45596 * 140.78199 * 180.02562 * 18 17 16 20 20 C 1.31803 * 114.63486 * 180.02562 * 19 18 17 21 21 S 1.75357 * 111.24727 * 359.96697 * 20 19 18 22 22 C 1.38177 * 106.99403 * 0.02562 * 18 17 16 23 23 N 1.37454 * 108.17086 * 0.02562 * 22 18 17 24 24 H 0.96999 * 125.68800 * 180.02562 * 23 22 18 25 25 C 1.52999 * 109.47013 * 240.00103 * 2 1 3 26 26 C 1.53001 * 117.50108 * 12.76116 * 25 2 1 27 27 C 1.53004 * 117.49790 * 304.10152 * 25 2 1 28 28 H 1.09001 * 109.47098 * 300.00338 * 1 2 3 29 29 H 1.09002 * 109.46931 * 59.99821 * 1 2 3 30 30 H 1.08998 * 109.47636 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47415 * 299.99883 * 3 2 1 32 32 H 1.08991 * 109.47160 * 60.00325 * 3 2 1 33 33 H 0.97003 * 120.00517 * 359.97438 * 4 3 2 34 34 H 0.97003 * 120.00175 * 180.02562 * 8 7 5 35 35 H 0.96990 * 120.00468 * 124.29620 * 13 2 1 36 36 H 1.08000 * 126.19278 * 359.76409 * 17 16 14 37 37 H 1.08002 * 122.67576 * 359.92305 * 19 18 17 38 38 H 1.08005 * 124.37789 * 180.02562 * 20 19 18 39 39 H 1.08999 * 115.55235 * 158.43650 * 25 2 1 40 40 H 1.09004 * 117.49505 * 359.97438 * 26 25 2 41 41 H 1.08993 * 117.50075 * 145.01950 * 26 25 2 42 42 H 1.08994 * 117.49721 * 214.98167 * 27 25 2 43 43 H 1.09000 * 117.49812 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4424 -0.0006 5 6 4.1897 2.6283 -0.0013 6 1 3.6497 3.5637 -0.0009 7 6 5.5778 2.6283 -0.0013 8 7 6.2359 1.4885 -0.0012 9 14 6.5118 4.2460 -0.0015 10 1 6.1532 5.0248 1.2109 11 1 7.9718 3.9747 -0.0021 12 1 6.1530 5.0246 -1.2141 13 7 2.0183 -0.6907 1.1961 14 6 1.6228 -0.2829 2.4183 15 8 0.9340 0.7140 2.5340 16 6 2.0220 -1.0394 3.6076 17 6 1.6906 -0.7337 4.8919 18 6 2.2728 -1.7214 5.7336 19 6 2.3793 -2.0849 7.1394 20 6 3.0882 -3.1710 7.3739 21 16 3.7008 -3.8639 5.8840 22 6 2.9481 -2.6043 4.9129 23 7 2.7941 -2.1847 3.6130 24 1 3.1646 -2.6210 2.8299 25 6 2.0400 -0.7212 -1.2493 26 6 1.0275 -1.0152 -2.3581 27 6 1.5580 -2.1543 -1.4838 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.9900 0.6024 -0.0006 34 1 7.2059 1.4884 -0.0009 35 1 2.6262 -1.4414 1.1085 36 1 1.0932 0.1065 5.2136 37 1 1.9158 -1.5095 7.9272 38 1 3.2678 -3.5818 8.3565 39 1 3.0589 -0.4774 -1.5498 40 1 -0.0020 -0.6952 -2.1973 41 1 1.3805 -0.9651 -3.3881 42 1 2.2598 -2.8531 -1.9391 43 1 0.8773 -2.5831 -0.7484 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666012095.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:06 Heat of formation + Delta-G solvation = 81.401311 kcal Electronic energy + Delta-G solvation = -26435.740327 eV Core-core repulsion = 22802.880768 eV Total energy + Delta-G solvation = -3632.859559 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -41.31844 -39.83624 -37.68843 -35.39841 -34.71034 -33.52808 -31.34005 -30.45587 -29.85316 -28.22585 -25.91022 -24.09595 -23.17654 -22.58447 -22.19574 -22.10182 -20.06880 -19.34912 -19.25172 -18.73283 -17.17306 -16.95555 -15.82272 -15.30204 -15.19595 -15.04484 -14.70080 -14.53448 -14.33120 -14.02732 -13.72085 -13.42203 -13.20324 -12.88185 -12.65780 -12.37440 -12.13429 -11.99681 -11.91579 -11.71618 -11.40401 -11.11623 -10.93160 -10.89107 -10.79342 -10.74995 -10.25630 -10.12143 -9.89335 -9.67655 -9.57239 -9.50195 -8.79703 -8.72278 -8.31880 -7.70910 -6.84819 -5.73931 -2.99963 1.00219 1.27839 1.44588 1.89645 2.88933 3.08327 3.20021 3.47098 3.50906 3.52553 3.61412 4.02674 4.60732 4.62795 4.73056 4.86809 4.99608 5.03622 5.12739 5.30826 5.36085 5.41050 5.54076 5.62358 5.66211 5.68524 5.73989 5.92434 5.99498 6.02737 6.13291 6.18267 6.20525 6.24096 6.37397 6.43607 6.49141 6.64772 6.69532 6.87501 7.06155 7.11913 7.74182 7.77148 8.42654 8.45761 9.57240 10.14559 10.50164 11.49403 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.009315 B = 0.003932 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3005.167777 B = 7118.598010 C = 8794.610915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.203 3.797 3 C 0.144 3.856 4 N -0.726 5.726 5 C -0.231 4.231 6 H 0.069 0.931 7 C -0.015 4.015 8 N -0.938 5.938 9 Si 0.906 3.094 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.287 1.287 13 N -0.706 5.706 14 C 0.594 3.406 15 O -0.516 6.516 16 C 0.005 3.995 17 C -0.075 4.075 18 C -0.163 4.163 19 C -0.067 4.067 20 C -0.226 4.226 21 S 0.126 5.874 22 C -0.010 4.010 23 N -0.522 5.522 24 H 0.420 0.580 25 C -0.151 4.151 26 C -0.170 4.170 27 C -0.185 4.185 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.025 0.975 32 H 0.046 0.954 33 H 0.380 0.620 34 H 0.253 0.747 35 H 0.392 0.608 36 H 0.156 0.844 37 H 0.144 0.856 38 H 0.168 0.832 39 H 0.123 0.877 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.252 -14.525 7.747 19.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.118 3.882 3 C 0.016 3.984 4 N -0.370 5.370 5 C -0.362 4.362 6 H 0.087 0.913 7 C -0.210 4.210 8 N -0.588 5.588 9 Si 0.737 3.263 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.213 1.213 13 N -0.356 5.356 14 C 0.380 3.620 15 O -0.392 6.392 16 C -0.108 4.108 17 C -0.103 4.103 18 C -0.176 4.176 19 C -0.098 4.098 20 C -0.360 4.360 21 S 0.379 5.621 22 C -0.239 4.239 23 N -0.125 5.125 24 H 0.259 0.741 25 C -0.170 4.170 26 C -0.207 4.207 27 C -0.222 4.222 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.064 0.936 33 H 0.214 0.786 34 H 0.063 0.937 35 H 0.225 0.775 36 H 0.174 0.826 37 H 0.161 0.839 38 H 0.186 0.814 39 H 0.141 0.859 40 H 0.118 0.882 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.845 -14.862 7.336 19.277 hybrid contribution 0.678 1.215 -0.128 1.397 sum -9.167 -13.647 7.208 17.950 Atomic orbital electron populations 1.22297 0.94438 1.01729 1.03858 1.20075 0.93232 0.93210 0.81673 1.21079 0.86488 0.91490 0.99376 1.42213 0.99153 1.06137 1.89495 1.19202 0.89019 0.86208 1.41800 0.91332 1.24666 0.96282 0.96721 1.03365 1.69628 1.06697 1.23913 1.58525 0.86279 0.78885 0.83283 0.77867 1.21326 1.21792 1.21338 1.45809 1.49074 1.35372 1.05347 1.16794 0.80193 0.83605 0.81425 1.90804 1.38800 1.24100 1.85510 1.20238 1.03434 0.91180 0.95985 1.20704 1.01500 0.98996 0.89056 1.19372 1.06694 0.99129 0.92415 1.20328 0.99108 0.96464 0.93908 1.24822 1.07716 1.02316 1.01104 1.83858 1.56868 1.25859 0.95539 1.23508 1.08320 1.03625 0.88435 1.41430 1.43175 1.22525 1.05362 0.74138 1.22581 1.00885 0.96930 0.96596 1.23058 0.99283 1.02507 0.95867 1.22963 1.04056 0.91549 1.03627 0.90006 0.91331 0.92926 0.95687 0.93613 0.78574 0.93683 0.77483 0.82637 0.83857 0.81415 0.85908 0.88169 0.88799 0.88927 0.89074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 6.98 37.16 0.26 -2.08 16 2 C 0.20 3.28 0.54 -131.82 -0.07 3.21 16 3 C 0.14 3.04 5.03 -4.04 -0.02 3.02 16 4 N -0.73 -18.28 5.04 -59.91 -0.30 -18.59 16 5 C -0.23 -6.60 9.99 -15.06 -0.15 -6.75 16 6 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 7 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 8 N -0.94 -28.25 13.06 55.49 0.72 -27.53 16 9 Si 0.91 22.97 29.55 -169.99 -5.02 17.94 16 10 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 11 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 N -0.71 -10.92 4.72 -48.96 -0.23 -11.15 16 14 C 0.59 10.17 7.19 -12.93 -0.09 10.08 16 15 O -0.52 -10.27 13.08 5.17 0.07 -10.20 16 16 C 0.00 0.08 6.97 -82.47 -0.57 -0.50 16 17 C -0.07 -1.12 10.58 -38.81 -0.41 -1.53 16 18 C -0.16 -2.24 6.80 -105.45 -0.72 -2.95 16 19 C -0.07 -0.73 10.42 -38.54 -0.40 -1.13 16 20 C -0.23 -2.13 11.03 28.84 0.32 -1.81 16 21 S 0.13 1.29 23.24 -107.50 -2.50 -1.21 16 22 C -0.01 -0.13 8.41 -15.05 -0.13 -0.26 16 23 N -0.52 -6.77 6.08 -7.94 -0.05 -6.81 16 24 H 0.42 4.40 8.15 -40.82 -0.33 4.07 16 25 C -0.15 -2.22 4.84 -90.62 -0.44 -2.66 16 26 C -0.17 -2.05 9.64 -26.69 -0.26 -2.31 16 27 C -0.18 -2.11 9.82 -26.69 -0.26 -2.37 16 28 H 0.08 1.32 6.03 -51.93 -0.31 1.00 16 29 H 0.07 0.89 6.78 -51.93 -0.35 0.54 16 30 H 0.05 0.65 6.98 -51.93 -0.36 0.29 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 1.08 6.31 -51.93 -0.33 0.75 16 33 H 0.38 9.79 6.62 -40.82 -0.27 9.52 16 34 H 0.25 7.45 8.31 -40.82 -0.34 7.12 16 35 H 0.39 5.28 7.56 -40.82 -0.31 4.97 16 36 H 0.16 2.19 8.06 -52.49 -0.42 1.77 16 37 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.17 1.08 8.06 -52.48 -0.42 0.66 16 39 H 0.12 2.19 7.08 -51.93 -0.37 1.82 16 40 H 0.10 1.12 5.88 -51.93 -0.31 0.82 16 41 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.09 0.97 7.34 -51.93 -0.38 0.59 16 LS Contribution 363.33 15.07 5.48 5.48 Total: -1.00 -33.40 363.33 -10.28 -43.69 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: -5.40 Total: 16.96 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -3.04 Total: -8.59 kcal Atomic # 7 Polarization: -64.22 SS G_CDS: 0.14 Total: -64.08 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.07 Total: -10.20 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.94 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.50 Total: -1.21 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.40 -10.28 -43.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666012095.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.087 kcal (2) G-P(sol) polarization free energy of solvation -33.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds