Wall clock time and date at job start Tue Mar 31 2020 17:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47019 * 2 1 4 4 N 1.46498 * 109.46763 * 180.02562 * 3 2 1 5 5 C 1.36939 * 120.00106 * 179.97438 * 4 3 2 6 6 H 1.08004 * 119.99906 * 0.02562 * 5 4 3 7 7 C 1.38814 * 120.00496 * 179.97438 * 5 4 3 8 8 N 1.31616 * 119.99626 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00119 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47454 * 60.00052 * 9 7 5 11 11 H 1.48498 * 109.47049 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47015 * 299.99908 * 9 7 5 13 13 N 1.46498 * 109.47082 * 120.00413 * 2 1 3 14 14 C 1.34778 * 119.99615 * 304.29429 * 13 2 1 15 15 O 1.21725 * 120.00074 * 354.98596 * 14 13 2 16 16 C 1.46494 * 119.99903 * 174.98605 * 14 13 2 17 17 C 1.36114 * 125.70882 * 179.97438 * 16 14 13 18 18 C 1.42229 * 107.62440 * 179.73860 * 17 16 14 19 19 C 1.45596 * 140.78199 * 180.02562 * 18 17 16 20 20 C 1.31803 * 114.63486 * 180.02562 * 19 18 17 21 21 S 1.75357 * 111.24727 * 359.96697 * 20 19 18 22 22 C 1.38177 * 106.99403 * 0.02562 * 18 17 16 23 23 N 1.37454 * 108.17086 * 0.02562 * 22 18 17 24 24 H 0.96999 * 125.68800 * 180.02562 * 23 22 18 25 25 C 1.52999 * 109.47013 * 240.00103 * 2 1 3 26 26 C 1.53001 * 117.50108 * 12.76116 * 25 2 1 27 27 C 1.53004 * 117.49790 * 304.10152 * 25 2 1 28 28 H 1.09001 * 109.47098 * 300.00338 * 1 2 3 29 29 H 1.09002 * 109.46931 * 59.99821 * 1 2 3 30 30 H 1.08998 * 109.47636 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47415 * 299.99883 * 3 2 1 32 32 H 1.08991 * 109.47160 * 60.00325 * 3 2 1 33 33 H 0.97003 * 120.00517 * 359.97438 * 4 3 2 34 34 H 0.97003 * 120.00175 * 180.02562 * 8 7 5 35 35 H 0.96990 * 120.00468 * 124.29620 * 13 2 1 36 36 H 1.08000 * 126.19278 * 359.76409 * 17 16 14 37 37 H 1.08002 * 122.67576 * 359.92305 * 19 18 17 38 38 H 1.08005 * 124.37789 * 180.02562 * 20 19 18 39 39 H 1.08999 * 115.55235 * 158.43650 * 25 2 1 40 40 H 1.09004 * 117.49505 * 359.97438 * 26 25 2 41 41 H 1.08993 * 117.50075 * 145.01950 * 26 25 2 42 42 H 1.08994 * 117.49721 * 214.98167 * 27 25 2 43 43 H 1.09000 * 117.49812 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4424 -0.0006 5 6 4.1897 2.6283 -0.0013 6 1 3.6497 3.5637 -0.0009 7 6 5.5778 2.6283 -0.0013 8 7 6.2359 1.4885 -0.0012 9 14 6.5118 4.2460 -0.0015 10 1 6.1532 5.0248 1.2109 11 1 7.9718 3.9747 -0.0021 12 1 6.1530 5.0246 -1.2141 13 7 2.0183 -0.6907 1.1961 14 6 1.6228 -0.2829 2.4183 15 8 0.9340 0.7140 2.5340 16 6 2.0220 -1.0394 3.6076 17 6 1.6906 -0.7337 4.8919 18 6 2.2728 -1.7214 5.7336 19 6 2.3793 -2.0849 7.1394 20 6 3.0882 -3.1710 7.3739 21 16 3.7008 -3.8639 5.8840 22 6 2.9481 -2.6043 4.9129 23 7 2.7941 -2.1847 3.6130 24 1 3.1646 -2.6210 2.8299 25 6 2.0400 -0.7212 -1.2493 26 6 1.0275 -1.0152 -2.3581 27 6 1.5580 -2.1543 -1.4838 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.9900 0.6024 -0.0006 34 1 7.2059 1.4884 -0.0009 35 1 2.6262 -1.4414 1.1085 36 1 1.0932 0.1065 5.2136 37 1 1.9158 -1.5095 7.9272 38 1 3.2678 -3.5818 8.3565 39 1 3.0589 -0.4774 -1.5498 40 1 -0.0020 -0.6952 -2.1973 41 1 1.3805 -0.9651 -3.3881 42 1 2.2598 -2.8531 -1.9391 43 1 0.8773 -2.5831 -0.7484 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666012095.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:05 Heat of formation + Delta-G solvation = 59.483821 kcal Electronic energy + Delta-G solvation = -26436.690741 eV Core-core repulsion = 22802.880768 eV Total energy + Delta-G solvation = -3633.809972 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.41275 -41.08430 -38.93138 -36.40806 -36.30096 -35.08993 -33.14239 -31.56381 -31.38808 -29.26325 -27.61668 -25.53263 -24.41343 -24.01696 -23.43092 -23.10775 -21.17995 -20.49159 -20.34930 -19.92239 -19.25956 -18.04051 -17.06969 -16.83946 -16.43427 -16.24798 -15.99336 -15.68889 -15.47910 -15.29850 -15.27569 -14.94867 -14.50106 -14.28403 -13.86566 -13.77648 -13.64077 -13.25989 -13.10449 -12.79791 -12.79315 -12.62603 -12.46676 -12.28305 -12.12503 -12.05611 -11.78597 -11.75428 -11.32164 -11.11745 -10.99038 -10.77859 -10.54036 -10.09654 -9.27104 -8.97181 -8.63225 -7.97889 -5.23671 0.08990 0.24762 0.44272 1.07937 1.42565 1.45575 1.51365 1.84584 1.95116 2.12655 2.38113 2.53396 2.98308 3.35229 3.54524 3.66239 3.83581 3.87603 3.91686 4.03198 4.13511 4.21231 4.41495 4.43906 4.61173 4.64563 4.75324 4.76826 4.84141 4.85062 4.94933 5.00129 5.07922 5.14340 5.18955 5.29794 5.30284 5.41590 5.44093 5.46680 5.56687 5.66963 6.13913 6.24801 6.51699 7.12450 7.32376 8.06840 8.34724 9.25037 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.009315 B = 0.003932 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3005.167777 B = 7118.598010 C = 8794.610915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.212 3.788 3 C 0.145 3.855 4 N -0.729 5.729 5 C -0.245 4.245 6 H 0.064 0.936 7 C -0.068 4.068 8 N -0.964 5.964 9 Si 0.968 3.032 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.277 1.277 13 N -0.699 5.699 14 C 0.590 3.410 15 O -0.553 6.553 16 C -0.016 4.016 17 C -0.089 4.089 18 C -0.182 4.182 19 C -0.087 4.087 20 C -0.211 4.211 21 S 0.156 5.844 22 C -0.025 4.025 23 N -0.516 5.516 24 H 0.429 0.571 25 C -0.177 4.177 26 C -0.160 4.160 27 C -0.157 4.157 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.022 0.978 32 H 0.019 0.981 33 H 0.376 0.624 34 H 0.251 0.749 35 H 0.401 0.599 36 H 0.153 0.847 37 H 0.164 0.836 38 H 0.204 0.796 39 H 0.088 0.912 40 H 0.114 0.886 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.442 -16.422 8.287 21.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.126 3.874 3 C 0.017 3.983 4 N -0.372 5.372 5 C -0.377 4.377 6 H 0.082 0.918 7 C -0.261 4.261 8 N -0.615 5.615 9 Si 0.797 3.203 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.203 1.203 13 N -0.348 5.348 14 C 0.377 3.623 15 O -0.431 6.431 16 C -0.129 4.129 17 C -0.117 4.117 18 C -0.195 4.195 19 C -0.117 4.117 20 C -0.344 4.344 21 S 0.409 5.591 22 C -0.254 4.254 23 N -0.120 5.120 24 H 0.270 0.730 25 C -0.196 4.196 26 C -0.197 4.197 27 C -0.194 4.194 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.040 0.960 32 H 0.037 0.963 33 H 0.209 0.791 34 H 0.060 0.940 35 H 0.236 0.764 36 H 0.171 0.829 37 H 0.182 0.818 38 H 0.221 0.779 39 H 0.106 0.894 40 H 0.132 0.868 41 H 0.118 0.882 42 H 0.123 0.877 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.047 -16.785 7.854 21.080 hybrid contribution 0.741 1.760 -0.225 1.923 sum -9.305 -15.025 7.629 19.249 Atomic orbital electron populations 1.22219 0.92521 1.03188 1.03463 1.19903 0.94437 0.90335 0.82688 1.21120 0.84282 0.95184 0.97694 1.42274 1.00736 1.05011 1.89175 1.19532 0.89709 0.87231 1.41274 0.91770 1.25409 0.97041 0.99906 1.03711 1.69766 1.06559 1.25631 1.59560 0.85299 0.77361 0.79647 0.78003 1.21142 1.21680 1.20313 1.45769 1.48877 1.35292 1.04875 1.17081 0.79678 0.83295 0.82214 1.90777 1.40524 1.25710 1.86117 1.19991 1.05114 0.92450 0.95380 1.20877 1.01739 0.99487 0.89581 1.19736 1.06755 0.98873 0.94088 1.20544 1.00512 0.97652 0.93019 1.25314 1.05684 1.01184 1.02228 1.83824 1.55925 1.24286 0.95084 1.24037 1.08408 1.04633 0.88332 1.41315 1.42771 1.21874 1.06008 0.73037 1.22252 0.99951 1.00225 0.97155 1.23195 0.99048 1.01989 0.95478 1.23048 1.03428 0.89949 1.02950 0.92123 0.90010 0.90425 0.95973 0.96315 0.79083 0.94047 0.76369 0.82930 0.81831 0.77875 0.89420 0.86822 0.88159 0.87669 0.87554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.32 6.98 71.98 0.50 -3.82 16 2 C 0.21 6.92 0.54 3.60 0.00 6.92 16 3 C 0.14 6.37 5.03 86.38 0.43 6.80 16 4 N -0.73 -38.09 5.04 -343.46 -1.73 -39.82 16 5 C -0.25 -14.40 9.99 84.03 0.84 -13.56 16 6 H 0.06 3.73 7.83 -2.91 -0.02 3.71 16 7 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 8 N -0.96 -59.05 13.06 21.65 0.28 -58.77 16 9 Si 0.97 47.77 29.55 68.60 2.03 49.80 16 10 H -0.28 -13.88 7.11 99.48 0.71 -13.18 16 11 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 13 N -0.70 -22.06 4.72 -427.00 -2.02 -24.08 16 14 C 0.59 21.04 7.19 86.39 0.62 21.66 16 15 O -0.55 -23.21 13.08 -4.43 -0.06 -23.27 16 16 C -0.02 -0.50 6.97 39.81 0.28 -0.22 16 17 C -0.09 -2.75 10.58 22.77 0.24 -2.51 16 18 C -0.18 -4.91 6.80 -20.40 -0.14 -5.05 16 19 C -0.09 -1.74 10.42 23.40 0.24 -1.49 16 20 C -0.21 -3.33 11.03 67.05 0.74 -2.59 16 21 S 0.16 2.85 23.24 -56.49 -1.31 1.54 16 22 C -0.03 -0.64 8.41 83.80 0.70 0.07 16 23 N -0.52 -13.38 6.08 -179.04 -1.09 -14.47 16 24 H 0.43 8.90 8.15 -92.71 -0.76 8.15 16 25 C -0.18 -5.11 4.84 -10.79 -0.05 -5.17 16 26 C -0.16 -3.52 9.64 30.62 0.30 -3.22 16 27 C -0.16 -3.19 9.82 30.62 0.30 -2.89 16 28 H 0.06 1.98 6.03 -2.39 -0.01 1.97 16 29 H 0.08 2.02 6.78 -2.39 -0.02 2.01 16 30 H 0.08 1.76 6.98 -2.39 -0.02 1.75 16 31 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.02 0.94 6.31 -2.39 -0.02 0.92 16 33 H 0.38 20.10 6.62 -92.71 -0.61 19.48 16 34 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 35 H 0.40 10.93 7.56 -92.72 -0.70 10.23 16 36 H 0.15 4.60 8.06 -2.91 -0.02 4.58 16 37 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 38 H 0.20 1.70 8.06 -2.91 -0.02 1.68 16 39 H 0.09 3.21 7.08 -2.39 -0.02 3.19 16 40 H 0.11 2.21 5.88 -2.39 -0.01 2.19 16 41 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.11 1.88 7.34 -2.39 -0.02 1.87 16 Total: -1.00 -74.15 363.33 0.60 -73.55 By element: Atomic # 1 Polarization: 45.12 SS G_CDS: -0.98 Total: 44.14 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: 5.48 Total: -8.62 kcal Atomic # 7 Polarization: -132.59 SS G_CDS: -4.55 Total: -137.14 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.06 Total: -23.27 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.80 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -1.31 Total: 1.54 kcal Total: -74.15 0.60 -73.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666012095.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.038 kcal (2) G-P(sol) polarization free energy of solvation -74.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds