Wall clock time and date at job start Tue Mar 31 2020 17:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46929 * 2 1 4 4 N 1.46491 * 109.47205 * 300.00266 * 3 2 1 5 5 C 1.36947 * 119.99817 * 179.97438 * 4 3 2 6 6 H 1.08001 * 120.00021 * 359.97438 * 5 4 3 7 7 C 1.38817 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31621 * 119.99846 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99952 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47164 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47210 * 119.99958 * 9 7 5 12 12 H 1.48498 * 109.47084 * 240.00201 * 9 7 5 13 13 N 1.46501 * 109.47007 * 240.00200 * 2 1 3 14 14 C 1.34777 * 119.99695 * 183.92800 * 13 2 1 15 15 O 1.21722 * 120.00190 * 5.19696 * 14 13 2 16 16 C 1.46495 * 119.99648 * 185.20170 * 14 13 2 17 17 C 1.36117 * 125.70945 * 180.02562 * 16 14 13 18 18 C 1.42229 * 107.62432 * 179.97438 * 17 16 14 19 19 C 1.45596 * 140.77440 * 179.97438 * 18 17 16 20 20 C 1.31808 * 114.62846 * 179.97438 * 19 18 17 21 21 S 1.75357 * 111.24882 * 0.03202 * 20 19 18 22 22 C 1.38176 * 106.99525 * 359.97438 * 18 17 16 23 23 N 1.37460 * 108.16786 * 359.75295 * 22 18 17 24 24 H 0.96997 * 125.67785 * 180.27844 * 23 22 18 25 25 C 1.52995 * 109.47147 * 120.00238 * 2 1 3 26 26 C 1.53010 * 117.50013 * 57.08750 * 25 2 1 27 27 C 1.53003 * 117.50012 * 348.46470 * 25 2 1 28 28 H 1.08992 * 109.47197 * 299.99434 * 1 2 3 29 29 H 1.08996 * 109.47356 * 60.00355 * 1 2 3 30 30 H 1.09009 * 109.47142 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46906 * 60.00180 * 3 2 1 32 32 H 1.08999 * 109.46994 * 179.97438 * 3 2 1 33 33 H 0.97000 * 120.00927 * 359.97438 * 4 3 2 34 34 H 0.97001 * 119.99497 * 180.02562 * 8 7 5 35 35 H 0.97002 * 120.00154 * 3.92737 * 13 2 1 36 36 H 1.08001 * 126.18360 * 359.96213 * 17 16 14 37 37 H 1.07993 * 122.68376 * 359.97438 * 19 18 17 38 38 H 1.08001 * 124.38226 * 180.02562 * 20 19 18 39 39 H 1.08999 * 115.56568 * 202.77375 * 25 2 1 40 40 H 1.08994 * 117.49583 * 145.01934 * 26 25 2 41 41 H 1.09003 * 117.49297 * 0.02562 * 26 25 2 42 42 H 1.08999 * 117.49765 * 0.02562 * 27 25 2 43 43 H 1.08996 * 117.50183 * 214.98181 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5516 2.1331 -1.1961 5 6 1.8820 3.4444 -1.4124 6 1 2.5022 3.9694 -0.7011 7 6 1.4197 4.0986 -2.5461 8 7 0.6634 3.4588 -3.4127 9 14 1.8709 5.8870 -2.8417 10 1 2.7237 6.3731 -1.7273 11 1 2.6139 6.0050 -4.1220 12 1 0.6333 6.7049 -2.9103 13 7 2.0184 -0.6906 -1.1962 14 6 3.3408 -0.8834 -1.3703 15 8 4.1225 -0.5694 -0.4917 16 6 3.8375 -1.4708 -2.6170 17 6 5.1428 -1.7166 -2.9148 18 6 5.1873 -2.2884 -4.2163 19 6 6.1398 -2.7983 -5.1922 20 6 5.5981 -3.2388 -6.3102 21 16 3.8529 -3.0712 -6.2799 22 6 3.8834 -2.3697 -4.6665 23 7 3.0592 -1.8746 -3.6842 24 1 2.0922 -1.8162 -3.7334 25 6 2.0400 -0.7213 1.2492 26 6 1.5803 -2.1640 1.4692 27 6 1.0218 -1.0410 2.3456 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 0.9942 1.6617 -1.8348 34 1 0.3406 3.9159 -4.2051 35 1 1.3899 -1.0090 -1.8629 36 1 5.9911 -1.5138 -2.2779 37 1 7.2049 -2.8142 -5.0144 38 1 6.1569 -3.6499 -7.1380 39 1 3.0516 -0.4623 1.5618 40 1 2.2894 -2.8539 1.9265 41 1 0.9148 -2.5993 0.7236 42 1 -0.0114 -0.7378 2.1767 43 1 1.3635 -0.9922 3.3794 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666012096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:12 Heat of formation + Delta-G solvation = 80.485675 kcal Electronic energy + Delta-G solvation = -26506.023823 eV Core-core repulsion = 22873.124559 eV Total energy + Delta-G solvation = -3632.899264 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -41.27239 -39.81298 -37.50143 -35.35006 -35.01521 -33.49595 -31.35995 -30.41154 -29.55914 -28.21667 -26.21855 -24.04816 -23.34889 -22.80902 -22.14771 -21.39052 -20.07892 -19.52995 -19.24454 -18.64747 -17.29092 -16.73153 -16.03913 -15.27583 -15.09416 -15.04486 -14.65546 -14.45808 -14.24669 -14.09787 -13.76781 -13.39528 -13.18151 -12.86568 -12.76760 -12.36584 -12.13121 -11.93435 -11.87874 -11.64078 -11.32319 -11.11305 -10.91635 -10.87172 -10.83691 -10.68876 -10.34381 -10.13550 -9.92135 -9.69138 -9.52567 -9.46046 -8.85278 -8.72261 -8.27596 -7.66606 -6.88954 -5.77349 -3.03596 1.04698 1.32276 1.48861 1.93906 2.92797 3.13033 3.24009 3.44046 3.50432 3.52306 3.65641 4.08544 4.56093 4.64343 4.78081 4.92487 5.03014 5.07080 5.18139 5.30714 5.40042 5.41048 5.59594 5.60481 5.61630 5.71531 5.73523 5.90315 5.97843 6.06287 6.15529 6.17919 6.19790 6.23978 6.42492 6.46943 6.49506 6.57050 6.73248 6.85133 7.00733 7.16455 7.72754 7.76592 8.42395 8.45229 9.54159 10.10625 10.46083 11.46129 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.008280 B = 0.004421 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3381.024316 B = 6331.745724 C = 8723.899786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.202 3.798 3 C 0.146 3.854 4 N -0.727 5.727 5 C -0.231 4.231 6 H 0.070 0.930 7 C -0.015 4.015 8 N -0.937 5.937 9 Si 0.905 3.095 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.292 1.292 13 N -0.708 5.708 14 C 0.598 3.402 15 O -0.518 6.518 16 C 0.006 3.994 17 C -0.076 4.076 18 C -0.164 4.164 19 C -0.068 4.068 20 C -0.226 4.226 21 S 0.126 5.874 22 C -0.009 4.009 23 N -0.521 5.521 24 H 0.420 0.580 25 C -0.143 4.143 26 C -0.175 4.175 27 C -0.182 4.182 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.028 0.972 32 H 0.039 0.961 33 H 0.380 0.620 34 H 0.253 0.747 35 H 0.390 0.610 36 H 0.155 0.845 37 H 0.143 0.857 38 H 0.168 0.832 39 H 0.117 0.883 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.419 -17.934 -0.134 18.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.117 3.883 3 C 0.018 3.982 4 N -0.371 5.371 5 C -0.362 4.362 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.587 5.587 9 Si 0.737 3.263 10 H -0.205 1.205 11 H -0.220 1.220 12 H -0.220 1.220 13 N -0.358 5.358 14 C 0.384 3.616 15 O -0.393 6.393 16 C -0.107 4.107 17 C -0.104 4.104 18 C -0.176 4.176 19 C -0.098 4.098 20 C -0.360 4.360 21 S 0.379 5.621 22 C -0.238 4.238 23 N -0.124 5.124 24 H 0.259 0.741 25 C -0.162 4.162 26 C -0.212 4.212 27 C -0.219 4.219 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.214 0.786 34 H 0.062 0.938 35 H 0.223 0.777 36 H 0.173 0.827 37 H 0.161 0.839 38 H 0.186 0.814 39 H 0.135 0.865 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.118 0.882 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.799 -17.804 -0.401 18.028 hybrid contribution 0.349 1.164 -0.015 1.215 sum 3.148 -16.641 -0.416 16.941 Atomic orbital electron populations 1.22140 0.93427 1.01343 1.04371 1.20070 0.93551 0.92386 0.82307 1.21017 0.97966 0.88041 0.91212 1.42257 1.61309 1.10527 1.23030 1.19290 1.25058 0.87529 1.04320 0.91193 1.24674 1.00688 0.98270 0.97406 1.69647 1.39874 1.36037 1.13131 0.86127 0.77491 0.85050 0.77652 1.20538 1.21961 1.21955 1.45856 1.06444 1.59496 1.23968 1.16751 0.82537 0.77799 0.84524 1.90805 1.55824 1.50946 1.41730 1.20226 0.91055 1.09367 0.90085 1.20686 0.95097 1.00439 0.94153 1.19365 0.90988 1.10191 0.97098 1.20320 0.99617 0.98235 0.91660 1.24819 0.96402 1.11630 1.03145 1.83858 1.04982 1.66046 1.07216 1.23498 0.93758 1.09243 0.97305 1.41424 1.08427 1.50561 1.11955 0.74136 1.22600 0.99973 0.97233 0.96397 1.22796 1.03676 0.91664 1.03067 1.23144 0.99431 1.03399 0.95935 0.90414 0.90655 0.92840 0.95411 0.94281 0.78572 0.93755 0.77677 0.82724 0.83902 0.81444 0.86470 0.89365 0.89366 0.88203 0.89097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 7.04 37.16 0.26 -1.94 16 2 C 0.20 3.23 0.54 -131.82 -0.07 3.16 16 3 C 0.15 3.05 5.02 -4.05 -0.02 3.03 16 4 N -0.73 -18.07 5.17 -59.91 -0.31 -18.38 16 5 C -0.23 -6.52 9.99 -15.05 -0.15 -6.67 16 6 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 7 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 8 N -0.94 -27.97 13.06 55.49 0.72 -27.24 16 9 Si 0.91 22.82 29.55 -169.99 -5.02 17.80 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 12 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 13 N -0.71 -10.84 4.71 -48.95 -0.23 -11.07 16 14 C 0.60 10.27 7.19 -12.93 -0.09 10.17 16 15 O -0.52 -10.21 13.66 5.17 0.07 -10.14 16 16 C 0.01 0.10 6.97 -82.47 -0.57 -0.48 16 17 C -0.08 -1.17 10.58 -38.81 -0.41 -1.58 16 18 C -0.16 -2.32 6.80 -105.45 -0.72 -3.04 16 19 C -0.07 -0.76 10.42 -38.54 -0.40 -1.17 16 20 C -0.23 -2.24 11.03 28.84 0.32 -1.92 16 21 S 0.13 1.37 23.24 -107.50 -2.50 -1.13 16 22 C -0.01 -0.12 8.41 -15.05 -0.13 -0.25 16 23 N -0.52 -7.05 6.08 -7.94 -0.05 -7.10 16 24 H 0.42 4.67 8.15 -40.82 -0.33 4.33 16 25 C -0.14 -2.07 4.05 -90.62 -0.37 -2.44 16 26 C -0.17 -2.11 9.81 -26.72 -0.26 -2.37 16 27 C -0.18 -2.15 9.61 -26.73 -0.26 -2.41 16 28 H 0.08 1.07 6.84 -51.93 -0.36 0.72 16 29 H 0.07 1.23 6.86 -51.93 -0.36 0.87 16 30 H 0.05 0.62 7.01 -51.92 -0.36 0.25 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.04 0.92 6.64 -51.93 -0.34 0.57 16 33 H 0.38 9.61 6.35 -40.82 -0.26 9.35 16 34 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.39 5.09 7.56 -40.82 -0.31 4.78 16 36 H 0.16 2.23 8.06 -52.49 -0.42 1.80 16 37 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.17 1.15 8.06 -52.49 -0.42 0.72 16 39 H 0.12 1.95 7.17 -51.93 -0.37 1.58 16 40 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.09 1.00 7.42 -51.93 -0.39 0.62 16 42 H 0.10 1.11 5.87 -51.93 -0.30 0.81 16 43 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 364.39 15.07 5.49 5.49 Total: -1.00 -33.30 364.39 -10.26 -43.56 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: -5.47 Total: 16.64 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -2.97 Total: -8.43 kcal Atomic # 7 Polarization: -63.92 SS G_CDS: 0.14 Total: -63.79 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.07 Total: -10.14 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -2.50 Total: -1.13 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.30 -10.26 -43.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666012096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.042 kcal (2) G-P(sol) polarization free energy of solvation -33.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds