Wall clock time and date at job start Tue Mar 31 2020 17:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46929 * 2 1 4 4 N 1.46491 * 109.47205 * 300.00266 * 3 2 1 5 5 C 1.36947 * 119.99817 * 179.97438 * 4 3 2 6 6 H 1.08001 * 120.00021 * 359.97438 * 5 4 3 7 7 C 1.38817 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31621 * 119.99846 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99952 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47164 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47210 * 119.99958 * 9 7 5 12 12 H 1.48498 * 109.47084 * 240.00201 * 9 7 5 13 13 N 1.46501 * 109.47007 * 240.00200 * 2 1 3 14 14 C 1.34777 * 119.99695 * 183.92800 * 13 2 1 15 15 O 1.21722 * 120.00190 * 5.19696 * 14 13 2 16 16 C 1.46495 * 119.99648 * 185.20170 * 14 13 2 17 17 C 1.36117 * 125.70945 * 180.02562 * 16 14 13 18 18 C 1.42229 * 107.62432 * 179.97438 * 17 16 14 19 19 C 1.45596 * 140.77440 * 179.97438 * 18 17 16 20 20 C 1.31808 * 114.62846 * 179.97438 * 19 18 17 21 21 S 1.75357 * 111.24882 * 0.03202 * 20 19 18 22 22 C 1.38176 * 106.99525 * 359.97438 * 18 17 16 23 23 N 1.37460 * 108.16786 * 359.75295 * 22 18 17 24 24 H 0.96997 * 125.67785 * 180.27844 * 23 22 18 25 25 C 1.52995 * 109.47147 * 120.00238 * 2 1 3 26 26 C 1.53010 * 117.50013 * 57.08750 * 25 2 1 27 27 C 1.53003 * 117.50012 * 348.46470 * 25 2 1 28 28 H 1.08992 * 109.47197 * 299.99434 * 1 2 3 29 29 H 1.08996 * 109.47356 * 60.00355 * 1 2 3 30 30 H 1.09009 * 109.47142 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46906 * 60.00180 * 3 2 1 32 32 H 1.08999 * 109.46994 * 179.97438 * 3 2 1 33 33 H 0.97000 * 120.00927 * 359.97438 * 4 3 2 34 34 H 0.97001 * 119.99497 * 180.02562 * 8 7 5 35 35 H 0.97002 * 120.00154 * 3.92737 * 13 2 1 36 36 H 1.08001 * 126.18360 * 359.96213 * 17 16 14 37 37 H 1.07993 * 122.68376 * 359.97438 * 19 18 17 38 38 H 1.08001 * 124.38226 * 180.02562 * 20 19 18 39 39 H 1.08999 * 115.56568 * 202.77375 * 25 2 1 40 40 H 1.08994 * 117.49583 * 145.01934 * 26 25 2 41 41 H 1.09003 * 117.49297 * 0.02562 * 26 25 2 42 42 H 1.08999 * 117.49765 * 0.02562 * 27 25 2 43 43 H 1.08996 * 117.50183 * 214.98181 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5516 2.1331 -1.1961 5 6 1.8820 3.4444 -1.4124 6 1 2.5022 3.9694 -0.7011 7 6 1.4197 4.0986 -2.5461 8 7 0.6634 3.4588 -3.4127 9 14 1.8709 5.8870 -2.8417 10 1 2.7237 6.3731 -1.7273 11 1 2.6139 6.0050 -4.1220 12 1 0.6333 6.7049 -2.9103 13 7 2.0184 -0.6906 -1.1962 14 6 3.3408 -0.8834 -1.3703 15 8 4.1225 -0.5694 -0.4917 16 6 3.8375 -1.4708 -2.6170 17 6 5.1428 -1.7166 -2.9148 18 6 5.1873 -2.2884 -4.2163 19 6 6.1398 -2.7983 -5.1922 20 6 5.5981 -3.2388 -6.3102 21 16 3.8529 -3.0712 -6.2799 22 6 3.8834 -2.3697 -4.6665 23 7 3.0592 -1.8746 -3.6842 24 1 2.0922 -1.8162 -3.7334 25 6 2.0400 -0.7213 1.2492 26 6 1.5803 -2.1640 1.4692 27 6 1.0218 -1.0410 2.3456 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 0.9942 1.6617 -1.8348 34 1 0.3406 3.9159 -4.2051 35 1 1.3899 -1.0090 -1.8629 36 1 5.9911 -1.5138 -2.2779 37 1 7.2049 -2.8142 -5.0144 38 1 6.1569 -3.6499 -7.1380 39 1 3.0516 -0.4623 1.5618 40 1 2.2894 -2.8539 1.9265 41 1 0.9148 -2.5993 0.7236 42 1 -0.0114 -0.7378 2.1767 43 1 1.3635 -0.9922 3.3794 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666012096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:11 Heat of formation + Delta-G solvation = 58.756590 kcal Electronic energy + Delta-G solvation = -26506.966066 eV Core-core repulsion = 22873.124559 eV Total energy + Delta-G solvation = -3633.841508 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.39465 -41.06151 -38.75992 -36.63033 -36.30034 -35.10021 -33.16982 -31.52079 -31.12466 -29.28442 -27.79944 -25.77149 -24.62597 -23.81748 -23.13844 -22.89549 -21.24153 -20.67964 -20.32498 -19.91518 -19.25032 -17.84329 -17.28928 -16.85321 -16.37523 -16.26468 -15.98597 -15.54377 -15.51114 -15.35696 -15.21959 -14.97913 -14.50873 -14.48871 -13.85396 -13.67045 -13.56113 -13.30445 -13.00070 -12.85056 -12.80078 -12.59858 -12.48101 -12.17484 -12.13560 -12.01330 -11.78222 -11.75632 -11.49680 -11.08487 -11.00262 -10.74286 -10.53707 -10.07828 -9.26812 -8.99273 -8.63191 -7.98908 -5.24778 0.09241 0.26535 0.44410 1.07987 1.42873 1.44018 1.53638 1.85119 1.98243 2.13682 2.40809 2.52611 3.03870 3.35186 3.49227 3.69512 3.85189 3.90638 4.00620 4.05001 4.16825 4.22560 4.31706 4.46435 4.49099 4.64098 4.75536 4.76388 4.83809 4.89080 4.95639 4.99877 5.08393 5.16575 5.20870 5.27138 5.29822 5.39980 5.44557 5.45681 5.55445 5.67387 6.14257 6.24310 6.52074 7.15347 7.32240 8.04941 8.33683 9.24245 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.008280 B = 0.004421 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3381.024316 B = 6331.745724 C = 8723.899786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.211 3.789 3 C 0.148 3.852 4 N -0.729 5.729 5 C -0.243 4.243 6 H 0.064 0.936 7 C -0.067 4.067 8 N -0.963 5.963 9 Si 0.966 3.034 10 H -0.273 1.273 11 H -0.295 1.295 12 H -0.288 1.288 13 N -0.700 5.700 14 C 0.594 3.406 15 O -0.552 6.552 16 C -0.015 4.015 17 C -0.091 4.091 18 C -0.182 4.182 19 C -0.087 4.087 20 C -0.210 4.210 21 S 0.153 5.847 22 C -0.026 4.026 23 N -0.515 5.515 24 H 0.429 0.571 25 C -0.167 4.167 26 C -0.160 4.160 27 C -0.164 4.164 28 H 0.084 0.916 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.026 0.974 32 H 0.009 0.991 33 H 0.378 0.622 34 H 0.251 0.749 35 H 0.401 0.599 36 H 0.153 0.847 37 H 0.165 0.835 38 H 0.205 0.795 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.113 0.887 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.862 -19.329 -0.954 19.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.125 3.875 3 C 0.020 3.980 4 N -0.373 5.373 5 C -0.375 4.375 6 H 0.082 0.918 7 C -0.259 4.259 8 N -0.613 5.613 9 Si 0.796 3.204 10 H -0.197 1.197 11 H -0.222 1.222 12 H -0.215 1.215 13 N -0.350 5.350 14 C 0.381 3.619 15 O -0.430 6.430 16 C -0.129 4.129 17 C -0.119 4.119 18 C -0.194 4.194 19 C -0.117 4.117 20 C -0.344 4.344 21 S 0.406 5.594 22 C -0.255 4.255 23 N -0.119 5.119 24 H 0.269 0.731 25 C -0.187 4.187 26 C -0.197 4.197 27 C -0.201 4.201 28 H 0.102 0.898 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.044 0.956 32 H 0.027 0.973 33 H 0.211 0.789 34 H 0.060 0.940 35 H 0.237 0.763 36 H 0.170 0.830 37 H 0.182 0.818 38 H 0.222 0.778 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.119 0.881 42 H 0.131 0.869 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.215 -19.219 -1.211 19.384 hybrid contribution 0.596 1.549 0.195 1.671 sum 2.811 -17.670 -1.015 17.921 Atomic orbital electron populations 1.22086 0.91473 1.03304 1.03566 1.19896 0.94730 0.89483 0.83373 1.21041 0.96131 0.91250 0.89528 1.42316 1.61113 1.09769 1.24095 1.19574 1.24656 0.89041 1.04277 0.91803 1.25387 1.01128 1.02028 0.97377 1.69768 1.40833 1.37337 1.13408 0.85179 0.77255 0.80687 0.77311 1.19738 1.22205 1.21460 1.45789 1.06199 1.58791 1.24177 1.17007 0.82786 0.77420 0.84688 1.90780 1.56702 1.52544 1.43003 1.20050 0.91633 1.10789 0.90386 1.20865 0.95100 1.00787 0.95147 1.19743 0.92310 1.10383 0.97004 1.20544 1.00459 0.99183 0.91537 1.25312 0.95963 1.09698 1.03416 1.83823 1.05864 1.64978 1.04713 1.24033 0.93798 1.09120 0.98582 1.41323 1.08801 1.50324 1.11491 0.73102 1.22331 0.99590 0.99712 0.97052 1.22870 1.03359 0.90426 1.03007 1.23263 0.99151 1.01901 0.95777 0.89771 0.92850 0.89423 0.95569 0.97298 0.78901 0.94020 0.76349 0.82961 0.81786 0.77845 0.89294 0.88876 0.88066 0.86872 0.87930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 7.04 71.98 0.51 -3.46 16 2 C 0.21 6.79 0.54 3.60 0.00 6.79 16 3 C 0.15 6.42 5.02 86.38 0.43 6.85 16 4 N -0.73 -37.24 5.17 -343.46 -1.78 -39.01 16 5 C -0.24 -14.05 9.99 84.03 0.84 -13.21 16 6 H 0.06 3.68 7.83 -2.91 -0.02 3.66 16 7 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 8 N -0.96 -57.92 13.06 21.65 0.28 -57.64 16 9 Si 0.97 47.25 29.55 68.60 2.03 49.28 16 10 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 12 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 13 N -0.70 -21.82 4.71 -427.00 -2.01 -23.83 16 14 C 0.59 21.30 7.19 86.39 0.62 21.92 16 15 O -0.55 -23.14 13.66 -4.42 -0.06 -23.20 16 16 C -0.01 -0.49 6.97 39.81 0.28 -0.21 16 17 C -0.09 -2.90 10.58 22.77 0.24 -2.66 16 18 C -0.18 -5.11 6.80 -20.40 -0.14 -5.25 16 19 C -0.09 -1.82 10.42 23.40 0.24 -1.58 16 20 C -0.21 -3.55 11.03 67.05 0.74 -2.81 16 21 S 0.15 3.01 23.24 -56.49 -1.31 1.70 16 22 C -0.03 -0.71 8.41 83.80 0.70 0.00 16 23 N -0.52 -14.07 6.08 -179.03 -1.09 -15.16 16 24 H 0.43 9.52 8.15 -92.71 -0.76 8.77 16 25 C -0.17 -4.84 4.05 -10.79 -0.04 -4.88 16 26 C -0.16 -3.55 9.81 30.60 0.30 -3.25 16 27 C -0.16 -3.53 9.61 30.60 0.29 -3.24 16 28 H 0.08 2.17 6.84 -2.39 -0.02 2.16 16 29 H 0.05 1.70 6.86 -2.39 -0.02 1.68 16 30 H 0.09 1.77 7.01 -2.38 -0.02 1.75 16 31 H 0.03 1.14 8.14 -2.39 -0.02 1.13 16 32 H 0.01 0.45 6.64 -2.39 -0.02 0.43 16 33 H 0.38 19.51 6.35 -92.71 -0.59 18.92 16 34 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 35 H 0.40 10.46 7.56 -92.71 -0.70 9.76 16 36 H 0.15 4.71 8.06 -2.91 -0.02 4.69 16 37 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 38 H 0.20 1.89 8.06 -2.91 -0.02 1.87 16 39 H 0.09 3.11 7.17 -2.39 -0.02 3.09 16 40 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.10 2.00 7.42 -2.39 -0.02 1.99 16 42 H 0.11 2.17 5.87 -2.39 -0.01 2.15 16 43 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -73.37 364.39 0.59 -72.78 By element: Atomic # 1 Polarization: 44.42 SS G_CDS: -0.96 Total: 43.46 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: 5.49 Total: -8.38 kcal Atomic # 7 Polarization: -131.04 SS G_CDS: -4.59 Total: -135.64 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.06 Total: -23.20 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Atomic # 16 Polarization: 3.01 SS G_CDS: -1.31 Total: 1.70 kcal Total: -73.37 0.59 -72.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666012096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.538 kcal (2) G-P(sol) polarization free energy of solvation -73.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds