Wall clock time and date at job start Tue Mar 31 2020 17:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47119 * 2 1 4 4 C 1.53007 * 109.47303 * 120.00595 * 2 1 3 5 5 H 1.09004 * 109.46684 * 299.99698 * 4 2 1 6 6 C 1.52997 * 109.46931 * 180.02562 * 4 2 1 7 7 N 1.46504 * 109.46675 * 184.99456 * 6 4 2 8 8 C 1.34776 * 119.99735 * 180.02562 * 7 6 4 9 9 O 1.21609 * 120.00251 * 359.97438 * 8 7 6 10 10 C 1.47396 * 119.99850 * 180.02562 * 8 7 6 11 11 C 1.38870 * 120.01939 * 0.02565 * 10 8 7 12 12 C 1.38231 * 120.46057 * 179.97438 * 11 10 8 13 13 C 1.37958 * 120.28001 * 0.05827 * 12 11 10 14 14 C 1.39192 * 120.44557 * 359.91917 * 13 12 11 15 15 S 1.76138 * 131.63441 * 180.02562 * 14 13 12 16 16 C 1.70688 * 90.71345 * 179.97438 * 15 14 13 17 17 N 1.28156 * 111.37396 * 359.97438 * 16 15 14 18 18 C 1.33644 * 118.01938 * 0.02562 * 17 16 15 19 19 N 1.46494 * 109.47247 * 59.99593 * 4 2 1 20 20 C 1.36942 * 120.00323 * 275.00277 * 19 4 2 21 21 H 1.07999 * 119.99698 * 359.97438 * 20 19 4 22 22 C 1.38806 * 120.00268 * 180.02562 * 20 19 4 23 23 N 1.31623 * 119.99825 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00159 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47098 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.47004 * 120.00117 * 24 22 20 27 27 H 1.48496 * 109.47210 * 239.99829 * 24 22 20 28 28 H 1.08996 * 109.47159 * 299.99670 * 1 2 3 29 29 H 1.08994 * 109.47404 * 60.00009 * 1 2 3 30 30 H 1.09007 * 109.47114 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47004 * 240.00097 * 2 1 3 32 32 H 1.09005 * 109.47017 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.46975 * 300.00253 * 3 2 1 34 34 H 1.09008 * 109.46726 * 60.00478 * 3 2 1 35 35 H 1.09003 * 109.47149 * 64.99831 * 6 4 2 36 36 H 1.08997 * 109.47369 * 304.99238 * 6 4 2 37 37 H 0.96997 * 120.00432 * 0.02562 * 7 6 4 38 38 H 1.08008 * 119.76955 * 359.97438 * 11 10 8 39 39 H 1.08002 * 119.86418 * 180.02562 * 12 11 10 40 40 H 1.07995 * 119.77890 * 179.97438 * 13 12 11 41 41 H 1.07998 * 124.31403 * 179.73662 * 16 15 14 42 42 H 0.96997 * 119.99659 * 95.00388 * 19 4 2 43 43 H 0.96996 * 119.99940 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6767 -0.2076 2.1392 6 6 3.5700 -0.7208 1.2494 7 7 4.0584 -1.5131 2.3809 8 6 5.3835 -1.6534 2.5831 9 8 6.1737 -1.1228 1.8262 10 6 5.8748 -2.4510 3.7211 11 6 4.9728 -3.0583 4.5848 12 6 5.4236 -3.8088 5.6546 13 6 6.7767 -3.9613 5.8763 14 6 7.7025 -3.3637 5.0259 15 16 9.4639 -3.3628 5.0287 16 6 9.4869 -2.3839 3.6306 17 7 8.2999 -2.1085 3.2337 18 6 7.2736 -2.6006 3.9342 19 7 1.5517 -2.1025 1.2492 20 6 0.3101 -2.3899 1.7504 21 1 -0.3089 -1.5983 2.1461 22 6 -0.1524 -3.6986 1.7508 23 7 0.6026 -4.6636 1.2699 24 14 -1.8457 -4.0906 2.4351 25 1 -2.4888 -2.8398 2.9115 26 1 -2.6809 -4.7014 1.3698 27 1 -1.7139 -5.0423 3.5673 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 3.9329 0.3031 1.3393 36 1 3.9337 -1.1548 0.3181 37 1 3.4281 -1.9366 2.9844 38 1 3.9117 -2.9436 4.4195 39 1 4.7136 -4.2773 6.3200 40 1 7.1199 -4.5490 6.7148 41 1 10.3870 -2.0372 3.1449 42 1 2.1078 -2.8135 0.8941 43 1 0.2796 -5.5782 1.2705 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667459323.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:22 Heat of formation + Delta-G solvation = 32.059160 kcal Electronic energy + Delta-G solvation = -26011.856938 eV Core-core repulsion = 22376.857743 eV Total energy + Delta-G solvation = -3634.999195 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.74199 -38.97340 -37.19487 -36.85476 -33.82532 -33.13582 -31.58126 -30.30457 -30.01225 -27.97318 -26.12863 -25.16783 -24.34500 -23.45743 -21.98927 -21.37546 -20.42186 -19.46393 -18.60461 -17.35207 -16.89100 -16.46107 -15.97647 -15.32806 -15.26726 -15.07882 -14.96612 -14.34441 -14.01844 -13.92817 -13.61758 -13.40977 -13.27044 -12.86865 -12.67376 -12.26174 -12.10984 -12.02709 -11.93659 -11.62151 -11.36281 -11.05134 -10.97910 -10.84392 -10.64017 -10.29772 -10.21279 -10.09522 -9.95532 -9.78959 -9.56307 -9.38195 -8.94555 -8.90456 -8.60092 -8.22212 -7.05192 -5.84297 -3.13738 0.11042 0.74797 1.08800 1.53168 2.28613 2.98129 3.36389 3.43648 3.45494 3.50693 3.86442 3.88969 4.47353 4.51687 4.74628 4.87127 5.03176 5.05076 5.30793 5.34626 5.41249 5.53452 5.58378 5.64210 5.76295 5.87550 5.91740 5.96193 6.02616 6.11965 6.20023 6.25676 6.38467 6.43579 6.46213 6.54434 6.63547 6.68771 6.94897 7.07734 7.29087 7.55025 7.64957 7.96044 8.32816 8.61282 9.44936 9.99961 10.36160 11.37362 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013029 B = 0.003323 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.572174 B = 8423.326092 C =10169.996742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C -0.149 4.149 4 C 0.170 3.830 5 H 0.054 0.946 6 C 0.115 3.885 7 N -0.709 5.709 8 C 0.547 3.453 9 O -0.520 6.520 10 C -0.074 4.074 11 C -0.066 4.066 12 C -0.104 4.104 13 C -0.053 4.053 14 C -0.190 4.190 15 S 0.080 5.920 16 C 0.068 3.932 17 N -0.434 5.434 18 C 0.126 3.874 19 N -0.722 5.722 20 C -0.236 4.236 21 H 0.074 0.926 22 C -0.010 4.010 23 N -0.928 5.928 24 Si 0.901 3.099 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.040 0.960 29 H 0.031 0.969 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.045 0.955 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.407 0.593 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.134 0.866 41 H 0.204 0.796 42 H 0.385 0.615 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.884 3.944 9.173 17.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 C -0.207 4.207 4 C 0.059 3.941 5 H 0.072 0.928 6 C -0.009 4.009 7 N -0.362 5.362 8 C 0.332 3.668 9 O -0.397 6.397 10 C -0.080 4.080 11 C -0.087 4.087 12 C -0.125 4.125 13 C -0.075 4.075 14 C -0.309 4.309 15 S 0.334 5.666 16 C -0.237 4.237 17 N -0.144 5.144 18 C 0.004 3.996 19 N -0.363 5.363 20 C -0.367 4.367 21 H 0.092 0.908 22 C -0.207 4.207 23 N -0.576 5.576 24 Si 0.732 3.268 25 H -0.205 1.205 26 H -0.220 1.220 27 H -0.220 1.220 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.245 0.755 38 H 0.165 0.835 39 H 0.162 0.838 40 H 0.152 0.848 41 H 0.220 0.780 42 H 0.219 0.781 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.049 4.270 8.778 17.938 hybrid contribution -1.926 -0.654 0.172 2.041 sum 13.123 3.616 8.951 16.291 Atomic orbital electron populations 1.21818 0.94943 1.03877 0.98994 1.21723 0.96888 0.94427 1.00050 1.21945 1.00551 0.97316 1.00912 1.20553 0.89304 0.88175 0.96032 0.92841 1.21746 0.95582 0.94823 0.88737 1.45914 1.06210 1.52960 1.31094 1.17937 0.82808 0.81263 0.84747 1.90817 1.55191 1.47496 1.46193 1.19700 0.89864 1.00925 0.97507 1.21445 1.00220 0.94090 0.92931 1.21131 0.94880 0.98601 0.97916 1.20475 0.91872 0.97596 0.97598 1.23843 0.97343 1.07134 1.02532 1.83898 0.99710 1.52775 1.30266 1.28387 0.99058 0.99046 0.97204 1.65946 0.97843 1.21450 1.29169 1.18758 0.92940 0.96519 0.91397 1.42488 1.18107 1.01900 1.73852 1.19245 0.92808 0.92367 1.32313 0.90850 1.24721 0.98216 0.95895 1.01826 1.69676 1.36719 0.99838 1.51370 0.86217 0.84383 0.77926 0.78256 1.20550 1.21961 1.21954 0.94065 0.95003 0.89513 0.91871 0.92996 0.93566 0.93200 0.91492 0.91805 0.75508 0.83514 0.83821 0.84807 0.77955 0.78071 0.93540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 8.26 37.16 0.31 -2.17 16 2 C -0.11 -1.85 2.69 -90.62 -0.24 -2.10 16 3 C -0.15 -2.12 8.84 37.16 0.33 -1.79 16 4 C 0.17 3.09 2.18 -67.93 -0.15 2.94 16 5 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 6 C 0.12 2.00 4.73 -4.04 -0.02 1.98 16 7 N -0.71 -12.21 5.34 -61.39 -0.33 -12.53 16 8 C 0.55 10.07 7.76 -12.53 -0.10 9.97 16 9 O -0.52 -11.15 15.78 5.27 0.08 -11.06 16 10 C -0.07 -1.19 5.92 -104.38 -0.62 -1.80 16 11 C -0.07 -0.86 9.50 -39.35 -0.37 -1.24 16 12 C -0.10 -1.10 10.02 -39.69 -0.40 -1.50 16 13 C -0.05 -0.55 10.05 -39.33 -0.40 -0.95 16 14 C -0.19 -2.40 6.55 -38.59 -0.25 -2.65 16 15 S 0.08 0.78 23.18 -107.50 -2.49 -1.71 16 16 C 0.07 0.76 12.12 51.23 0.62 1.38 16 17 N -0.43 -6.93 9.43 -12.74 -0.12 -7.05 16 18 C 0.13 2.00 6.73 -84.89 -0.57 1.43 16 19 N -0.72 -16.04 4.44 -53.43 -0.24 -16.28 16 20 C -0.24 -5.81 7.57 -15.06 -0.11 -5.92 16 21 H 0.07 1.78 7.40 -52.49 -0.39 1.39 16 22 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 23 N -0.93 -26.10 13.06 55.49 0.72 -25.38 16 24 Si 0.90 20.97 29.55 -169.99 -5.02 15.95 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 1.83 6.01 -51.92 -0.31 1.51 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.05 0.71 6.54 -51.93 -0.34 0.37 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 35 H 0.07 1.10 6.71 -51.93 -0.35 0.75 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.41 6.80 6.13 -40.82 -0.25 6.55 16 38 H 0.15 1.83 6.34 -52.48 -0.33 1.50 16 39 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 40 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.20 1.46 8.06 -52.49 -0.42 1.04 16 42 H 0.39 9.48 7.80 -40.82 -0.32 9.16 16 43 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 366.85 15.07 5.53 5.53 Total: -1.00 -31.66 366.85 -9.58 -41.24 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -5.65 Total: 14.07 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -2.07 Total: -2.77 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: 0.04 Total: -61.24 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.08 Total: -11.06 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.49 Total: -1.71 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.66 -9.58 -41.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667459323.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.303 kcal (2) G-P(sol) polarization free energy of solvation -31.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds