Wall clock time and date at job start Tue Mar 31 2020 17:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47119 * 2 1 4 4 C 1.53007 * 109.47303 * 120.00595 * 2 1 3 5 5 H 1.09004 * 109.46684 * 299.99698 * 4 2 1 6 6 C 1.52997 * 109.46931 * 180.02562 * 4 2 1 7 7 N 1.46504 * 109.46675 * 184.99456 * 6 4 2 8 8 C 1.34776 * 119.99735 * 180.02562 * 7 6 4 9 9 O 1.21609 * 120.00251 * 359.97438 * 8 7 6 10 10 C 1.47396 * 119.99850 * 180.02562 * 8 7 6 11 11 C 1.38870 * 120.01939 * 0.02565 * 10 8 7 12 12 C 1.38231 * 120.46057 * 179.97438 * 11 10 8 13 13 C 1.37958 * 120.28001 * 0.05827 * 12 11 10 14 14 C 1.39192 * 120.44557 * 359.91917 * 13 12 11 15 15 S 1.76138 * 131.63441 * 180.02562 * 14 13 12 16 16 C 1.70688 * 90.71345 * 179.97438 * 15 14 13 17 17 N 1.28156 * 111.37396 * 359.97438 * 16 15 14 18 18 C 1.33644 * 118.01938 * 0.02562 * 17 16 15 19 19 N 1.46494 * 109.47247 * 59.99593 * 4 2 1 20 20 C 1.36942 * 120.00323 * 275.00277 * 19 4 2 21 21 H 1.07999 * 119.99698 * 359.97438 * 20 19 4 22 22 C 1.38806 * 120.00268 * 180.02562 * 20 19 4 23 23 N 1.31623 * 119.99825 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00159 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47098 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.47004 * 120.00117 * 24 22 20 27 27 H 1.48496 * 109.47210 * 239.99829 * 24 22 20 28 28 H 1.08996 * 109.47159 * 299.99670 * 1 2 3 29 29 H 1.08994 * 109.47404 * 60.00009 * 1 2 3 30 30 H 1.09007 * 109.47114 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47004 * 240.00097 * 2 1 3 32 32 H 1.09005 * 109.47017 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.46975 * 300.00253 * 3 2 1 34 34 H 1.09008 * 109.46726 * 60.00478 * 3 2 1 35 35 H 1.09003 * 109.47149 * 64.99831 * 6 4 2 36 36 H 1.08997 * 109.47369 * 304.99238 * 6 4 2 37 37 H 0.96997 * 120.00432 * 0.02562 * 7 6 4 38 38 H 1.08008 * 119.76955 * 359.97438 * 11 10 8 39 39 H 1.08002 * 119.86418 * 180.02562 * 12 11 10 40 40 H 1.07995 * 119.77890 * 179.97438 * 13 12 11 41 41 H 1.07998 * 124.31403 * 179.73662 * 16 15 14 42 42 H 0.96997 * 119.99659 * 95.00388 * 19 4 2 43 43 H 0.96996 * 119.99940 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6767 -0.2076 2.1392 6 6 3.5700 -0.7208 1.2494 7 7 4.0584 -1.5131 2.3809 8 6 5.3835 -1.6534 2.5831 9 8 6.1737 -1.1228 1.8262 10 6 5.8748 -2.4510 3.7211 11 6 4.9728 -3.0583 4.5848 12 6 5.4236 -3.8088 5.6546 13 6 6.7767 -3.9613 5.8763 14 6 7.7025 -3.3637 5.0259 15 16 9.4639 -3.3628 5.0287 16 6 9.4869 -2.3839 3.6306 17 7 8.2999 -2.1085 3.2337 18 6 7.2736 -2.6006 3.9342 19 7 1.5517 -2.1025 1.2492 20 6 0.3101 -2.3899 1.7504 21 1 -0.3089 -1.5983 2.1461 22 6 -0.1524 -3.6986 1.7508 23 7 0.6026 -4.6636 1.2699 24 14 -1.8457 -4.0906 2.4351 25 1 -2.4888 -2.8398 2.9115 26 1 -2.6809 -4.7014 1.3698 27 1 -1.7139 -5.0423 3.5673 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 3.9329 0.3031 1.3393 36 1 3.9337 -1.1548 0.3181 37 1 3.4281 -1.9366 2.9844 38 1 3.9117 -2.9436 4.4195 39 1 4.7136 -4.2773 6.3200 40 1 7.1199 -4.5490 6.7148 41 1 10.3870 -2.0372 3.1449 42 1 2.1078 -2.8135 0.8941 43 1 0.2796 -5.5782 1.2705 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667459323.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:20 Heat of formation + Delta-G solvation = 11.167179 kcal Electronic energy + Delta-G solvation = -26012.762882 eV Core-core repulsion = 22376.857743 eV Total energy + Delta-G solvation = -3635.905139 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -41.78129 -40.30121 -38.68373 -37.84802 -35.28566 -34.90927 -32.69637 -32.00134 -30.93876 -29.47712 -27.48101 -26.21854 -25.69434 -24.88812 -23.38599 -22.38433 -21.73402 -20.85002 -19.82788 -19.01710 -18.08710 -17.48345 -17.17509 -16.89629 -16.37564 -16.32760 -15.99879 -15.76993 -15.46929 -15.27774 -15.01768 -14.83694 -14.58878 -14.25282 -13.81065 -13.56881 -13.42430 -13.10130 -12.94877 -12.88838 -12.85988 -12.69921 -12.45612 -12.26018 -12.24991 -11.95226 -11.75645 -11.44865 -11.28010 -11.16865 -11.04809 -10.80744 -10.46048 -10.04425 -9.81409 -9.12998 -8.94834 -7.84997 -5.12865 -0.84035 -0.20940 0.26404 0.64764 1.38072 1.50888 1.54125 1.61383 1.77754 2.19459 2.61634 2.74250 3.02441 3.46714 3.52429 3.81780 3.84831 3.90145 3.97676 4.17260 4.19324 4.29314 4.31061 4.44628 4.45125 4.59102 4.66499 4.77739 4.92697 4.97673 4.99778 5.02955 5.07131 5.15271 5.21016 5.26654 5.32151 5.51195 5.57846 5.62710 5.65981 5.77809 6.34328 6.54449 6.68161 7.22558 7.42435 8.12447 8.38817 9.37948 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013029 B = 0.003323 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.572174 B = 8423.326092 C =10169.996742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 C -0.141 4.141 4 C 0.174 3.826 5 H 0.059 0.941 6 C 0.124 3.876 7 N -0.706 5.706 8 C 0.544 3.456 9 O -0.561 6.561 10 C -0.116 4.116 11 C -0.062 4.062 12 C -0.105 4.105 13 C -0.036 4.036 14 C -0.215 4.215 15 S 0.158 5.842 16 C 0.066 3.934 17 N -0.496 5.496 18 C 0.101 3.899 19 N -0.728 5.728 20 C -0.214 4.214 21 H 0.081 0.919 22 C -0.069 4.069 23 N -0.967 5.967 24 Si 0.958 3.042 25 H -0.266 1.266 26 H -0.305 1.305 27 H -0.296 1.296 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.046 0.954 37 H 0.410 0.590 38 H 0.146 0.854 39 H 0.178 0.822 40 H 0.174 0.826 41 H 0.236 0.764 42 H 0.371 0.629 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.578 4.388 11.421 19.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.128 4.128 3 C -0.199 4.199 4 C 0.065 3.935 5 H 0.077 0.923 6 C 0.000 4.000 7 N -0.358 5.358 8 C 0.332 3.668 9 O -0.441 6.441 10 C -0.123 4.123 11 C -0.083 4.083 12 C -0.126 4.126 13 C -0.058 4.058 14 C -0.334 4.334 15 S 0.412 5.588 16 C -0.237 4.237 17 N -0.208 5.208 18 C -0.021 4.021 19 N -0.367 5.367 20 C -0.345 4.345 21 H 0.098 0.902 22 C -0.261 4.261 23 N -0.618 5.618 24 Si 0.789 3.211 25 H -0.191 1.191 26 H -0.233 1.233 27 H -0.224 1.224 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.247 0.753 38 H 0.163 0.837 39 H 0.195 0.805 40 H 0.191 0.809 41 H 0.252 0.748 42 H 0.203 0.797 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 15.739 4.762 11.055 19.815 hybrid contribution -1.993 -0.755 -0.479 2.184 sum 13.747 4.007 10.576 17.801 Atomic orbital electron populations 1.21725 0.95187 1.01839 1.00357 1.21624 0.96552 0.96222 0.98400 1.21855 1.00772 0.95028 1.02236 1.20667 0.89655 0.86238 0.96893 0.92263 1.21631 0.94832 0.95363 0.88214 1.45885 1.06196 1.52837 1.30886 1.18412 0.82515 0.80817 0.85063 1.90768 1.56009 1.49421 1.47895 1.19636 0.91045 1.03364 0.98212 1.21566 0.99749 0.93801 0.93179 1.21512 0.95929 0.97875 0.97331 1.20991 0.91403 0.95970 0.97448 1.24281 0.99851 1.07106 1.02198 1.83552 0.96597 1.50690 1.27953 1.29012 0.98907 0.98058 0.97724 1.65962 0.99260 1.24133 1.31446 1.18972 0.92901 0.97561 0.92711 1.42594 1.17357 1.03244 1.73534 1.19511 0.93103 0.92140 1.29790 0.90157 1.25334 1.01143 0.96142 1.03510 1.69824 1.38286 0.99721 1.54012 0.85297 0.81001 0.77832 0.76993 1.19061 1.23296 1.22362 0.93303 0.93062 0.93096 0.93309 0.92619 0.92024 0.92093 0.90245 0.93608 0.75260 0.83659 0.80477 0.80907 0.74826 0.79670 0.94456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.61 8.26 71.98 0.59 -4.01 16 2 C -0.11 -3.55 2.69 -10.79 -0.03 -3.58 16 3 C -0.14 -3.72 8.84 71.98 0.64 -3.09 16 4 C 0.17 6.34 2.18 44.99 0.10 6.44 16 5 H 0.06 2.12 8.08 -2.38 -0.02 2.10 16 6 C 0.12 4.41 4.73 86.38 0.41 4.82 16 7 N -0.71 -25.34 5.34 -466.40 -2.49 -27.82 16 8 C 0.54 21.15 7.76 86.65 0.67 21.82 16 9 O -0.56 -25.47 15.78 -4.06 -0.06 -25.54 16 10 C -0.12 -3.89 5.92 -19.71 -0.12 -4.00 16 11 C -0.06 -1.63 9.50 22.42 0.21 -1.42 16 12 C -0.11 -2.01 10.02 22.20 0.22 -1.79 16 13 C -0.04 -0.65 10.05 22.43 0.23 -0.42 16 14 C -0.22 -5.09 6.55 22.91 0.15 -4.94 16 15 S 0.16 2.66 23.18 -56.49 -1.31 1.35 16 16 C 0.07 1.41 12.12 130.78 1.58 3.00 16 17 N -0.50 -16.18 9.43 -194.19 -1.83 -18.01 16 18 C 0.10 3.25 6.73 40.28 0.27 3.52 16 19 N -0.73 -32.92 4.44 -322.94 -1.43 -34.35 16 20 C -0.21 -10.53 7.57 84.03 0.64 -9.89 16 21 H 0.08 3.81 7.40 -2.91 -0.02 3.79 16 22 C -0.07 -3.66 5.50 84.86 0.47 -3.19 16 23 N -0.97 -55.90 13.06 21.65 0.28 -55.61 16 24 Si 0.96 43.52 29.55 68.60 2.03 45.54 16 25 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 26 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 27 H -0.30 -13.51 7.11 99.48 0.71 -12.81 16 28 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.05 2.12 6.01 -2.38 -0.01 2.11 16 31 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.05 1.43 6.54 -2.38 -0.02 1.42 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.08 2.63 6.71 -2.39 -0.02 2.62 16 36 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.41 14.19 6.13 -92.71 -0.57 13.62 16 38 H 0.15 3.71 6.34 -2.91 -0.02 3.69 16 39 H 0.18 2.13 8.06 -2.91 -0.02 2.11 16 40 H 0.17 1.72 8.06 -2.91 -0.02 1.69 16 41 H 0.24 2.98 8.06 -2.91 -0.02 2.96 16 42 H 0.37 18.95 7.80 -92.71 -0.72 18.23 16 43 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -72.07 366.85 0.98 -71.08 By element: Atomic # 1 Polarization: 40.32 SS G_CDS: -0.23 Total: 40.09 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 6.03 Total: 3.27 kcal Atomic # 7 Polarization: -130.33 SS G_CDS: -5.47 Total: -135.80 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.06 Total: -25.54 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -1.31 Total: 1.35 kcal Total: -72.07 0.98 -71.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667459323.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.249 kcal (2) G-P(sol) polarization free energy of solvation -72.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds