Wall clock time and date at job start Tue Mar 31 2020 16:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.28050 * 124.24288 * 2 1 4 4 C 1.34415 * 117.91902 * 179.97438 * 3 2 1 5 5 C 1.41241 * 129.48761 * 179.97438 * 4 3 2 6 6 C 1.35755 * 120.63415 * 180.02562 * 5 4 3 7 7 C 1.40187 * 120.61847 * 359.97438 * 6 5 4 8 8 C 1.47587 * 120.12770 * 179.97438 * 7 6 5 9 9 O 1.21593 * 120.00148 * 155.38803 * 8 7 6 10 10 N 1.34780 * 120.00162 * 335.10708 * 8 7 6 11 11 C 1.46507 * 119.99394 * 355.12269 * 10 8 7 12 12 C 1.46494 * 120.00481 * 175.12035 * 10 8 7 13 13 C 1.53002 * 109.47115 * 90.00081 * 12 10 8 14 14 N 1.46504 * 109.46738 * 180.02562 * 13 12 10 15 15 C 1.46500 * 119.99943 * 269.99716 * 14 13 12 16 16 C 1.36938 * 119.99909 * 90.00505 * 14 13 12 17 17 H 1.08003 * 120.00279 * 23.58595 * 16 14 13 18 18 C 1.38813 * 119.99759 * 203.59558 * 16 14 13 19 19 N 1.31621 * 120.00206 * 11.26366 * 18 16 14 20 20 Si 1.86802 * 120.00058 * 191.27079 * 18 16 14 21 21 H 1.48498 * 109.47304 * 59.99163 * 20 18 16 22 22 H 1.48496 * 109.47167 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46834 * 299.99676 * 20 18 16 24 24 C 1.39186 * 119.74856 * 0.25288 * 7 6 5 25 25 C 1.38915 * 119.84010 * 359.49946 * 24 7 6 26 26 S 1.70639 * 124.23780 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47083 * 90.02172 * 1 2 3 28 28 H 1.08989 * 109.47463 * 210.02733 * 1 2 3 29 29 H 1.09006 * 109.46866 * 330.03281 * 1 2 3 30 30 H 1.08002 * 119.68176 * 359.97438 * 5 4 3 31 31 H 1.08003 * 119.68910 * 179.97438 * 6 5 4 32 32 H 1.08998 * 109.47251 * 95.76592 * 11 10 8 33 33 H 1.09010 * 109.46687 * 215.76468 * 11 10 8 34 34 H 1.08995 * 109.46912 * 335.76017 * 11 10 8 35 35 H 1.09000 * 109.47162 * 210.00096 * 12 10 8 36 36 H 1.09000 * 109.46833 * 330.00020 * 12 10 8 37 37 H 1.09000 * 109.47117 * 300.00042 * 13 12 10 38 38 H 1.08991 * 109.47070 * 60.00242 * 13 12 10 39 39 H 1.09001 * 109.46714 * 95.05229 * 15 14 13 40 40 H 1.09002 * 109.46930 * 215.05398 * 15 14 13 41 41 H 1.09000 * 109.47116 * 335.05581 * 15 14 13 42 42 H 0.97001 * 120.00462 * 180.02562 * 19 18 16 43 43 H 1.07999 * 120.07499 * 179.74193 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2276 1.0585 0.0000 4 6 3.5635 0.9105 0.0005 5 6 4.5763 1.8950 0.0002 6 6 5.8865 1.5395 0.0003 7 6 6.2597 0.1883 0.0014 8 6 7.6874 -0.1859 0.0009 9 8 8.0330 -1.2657 0.4403 10 7 8.6075 0.6670 -0.4917 11 6 8.1820 1.9184 -1.1235 12 6 10.0328 0.3427 -0.3952 13 6 10.4636 -0.4374 -1.6390 14 7 11.8889 -0.7622 -1.5422 15 6 12.8894 0.1646 -2.0773 16 6 12.2860 -1.9322 -0.9516 17 1 11.6062 -2.7700 -0.9022 18 6 13.5621 -2.0412 -0.4165 19 7 14.3103 -0.9677 -0.2745 20 14 14.2179 -3.7118 0.1021 21 1 14.2424 -4.6202 -1.0723 22 1 15.5943 -3.5587 0.6378 23 1 13.3382 -4.2845 1.1525 24 6 5.2788 -0.7992 -0.0031 25 6 3.9368 -0.4404 0.0020 26 16 2.4671 -1.4107 0.0006 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3634 -0.8896 0.5142 29 1 -0.3633 0.8903 0.5134 30 1 4.3058 2.9405 -0.0011 31 1 6.6484 2.3050 -0.0004 32 1 8.2216 2.7262 -0.3927 33 1 8.8464 2.1491 -1.9564 34 1 7.1617 1.8110 -1.4916 35 1 10.6111 1.2640 -0.3258 36 1 10.2080 -0.2642 0.4931 37 1 9.8853 -1.3587 -1.7084 38 1 10.2884 0.1695 -2.5272 39 1 13.2498 0.8116 -1.2775 40 1 13.7242 -0.4011 -2.4911 41 1 12.4385 0.7729 -2.8614 42 1 15.2022 -1.0439 0.0992 43 1 5.5604 -1.8418 -0.0065 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667647762.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:53 Heat of formation + Delta-G solvation = 71.487540 kcal Electronic energy + Delta-G solvation = -25404.653319 eV Core-core repulsion = 21771.363866 eV Total energy + Delta-G solvation = -3633.289452 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.78 seconds Orbital eigenvalues (eV) -40.96391 -39.64122 -37.06803 -36.10042 -34.99125 -32.25806 -31.52160 -31.29051 -29.37999 -28.03121 -26.73974 -25.81942 -24.45975 -24.02210 -22.59066 -21.38358 -20.60187 -19.66562 -18.52762 -17.57132 -16.71880 -16.38411 -15.85029 -15.64618 -15.37439 -15.18896 -14.64760 -14.37120 -14.23815 -13.74164 -13.62942 -13.53915 -13.40669 -13.08386 -13.01362 -12.76144 -12.64859 -12.49483 -12.09576 -11.90203 -11.48174 -11.28550 -11.04453 -10.84748 -10.78055 -10.50664 -10.45052 -10.14353 -10.01020 -9.93404 -9.75601 -9.67815 -8.89430 -8.63524 -8.46756 -8.34139 -6.71038 -5.68733 -3.15296 -0.12260 0.84660 0.85917 1.35373 1.75494 2.89816 3.14989 3.45222 3.47157 3.48418 3.51346 3.56559 4.25700 4.39906 4.54342 4.56833 4.76624 4.83323 4.94742 4.97660 5.05747 5.22524 5.32310 5.39958 5.47622 5.49881 5.62596 5.66015 5.70288 5.81989 5.87162 5.97777 6.23331 6.26008 6.30048 6.61196 6.73495 6.75235 7.04293 7.23968 7.37799 7.59180 7.73382 7.88015 8.33925 8.45286 9.28453 9.89993 10.38351 11.36340 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.023563 B = 0.002358 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.037380 B =11869.585746 C =12747.247186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.091 3.909 3 N -0.472 5.472 4 C 0.101 3.899 5 C -0.075 4.075 6 C -0.093 4.093 7 C -0.109 4.109 8 C 0.550 3.450 9 O -0.523 6.523 10 N -0.604 5.604 11 C 0.063 3.937 12 C 0.094 3.906 13 C 0.143 3.857 14 N -0.598 5.598 15 C 0.163 3.837 16 C -0.251 4.251 17 H 0.069 0.931 18 C 0.001 3.999 19 N -0.911 5.911 20 Si 0.906 3.094 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.282 1.282 24 C -0.009 4.009 25 C -0.194 4.194 26 S 0.111 5.889 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.140 0.860 31 H 0.159 0.841 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.048 0.952 38 H 0.035 0.965 39 H 0.031 0.969 40 H 0.043 0.957 41 H -0.004 1.004 42 H 0.252 0.748 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.674 7.549 -1.349 27.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.193 4.193 3 N -0.187 5.187 4 C -0.020 4.020 5 C -0.096 4.096 6 C -0.114 4.114 7 C -0.116 4.116 8 C 0.337 3.663 9 O -0.399 6.399 10 N -0.337 5.337 11 C -0.080 4.080 12 C -0.030 4.030 13 C 0.015 3.985 14 N -0.321 5.321 15 C 0.018 3.982 16 C -0.381 4.381 17 H 0.087 0.913 18 C -0.197 4.197 19 N -0.556 5.556 20 Si 0.736 3.264 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.208 1.208 24 C -0.032 4.032 25 C -0.313 4.313 26 S 0.367 5.633 27 H 0.110 0.890 28 H 0.104 0.896 29 H 0.111 0.889 30 H 0.158 0.842 31 H 0.176 0.824 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.061 0.939 41 H 0.015 0.985 42 H 0.063 0.937 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -26.826 6.427 -1.074 27.606 hybrid contribution 1.082 0.003 0.409 1.157 sum -25.744 6.430 -0.665 26.543 Atomic orbital electron populations 1.20584 0.84701 1.04667 1.04393 1.26840 1.01924 0.91059 0.99482 1.66151 1.04154 1.31321 1.17061 1.19332 0.89115 0.91744 1.01836 1.20300 0.90140 0.98570 1.00577 1.21647 0.96604 0.96132 0.97008 1.19990 0.93749 0.93642 1.04228 1.18091 0.84764 0.84497 0.78911 1.90853 1.81048 1.21544 1.46502 1.47956 1.07875 1.20149 1.57714 1.22381 1.01590 0.86018 0.98005 1.22686 0.76067 1.00741 1.03488 1.21120 0.86645 0.97071 0.93686 1.43954 0.99372 1.21375 1.67424 1.20828 0.91030 0.92127 0.94202 1.19212 0.98331 0.89556 1.30995 0.91314 1.25054 0.98475 0.97162 0.98974 1.70041 1.10338 1.26502 1.48712 0.86307 0.77825 0.83741 0.78540 1.21070 1.21660 1.20810 1.20428 0.88150 1.00467 0.94156 1.23717 0.98743 0.96741 1.12092 1.84034 0.95365 1.10124 1.73770 0.89018 0.89612 0.88890 0.84231 0.82369 0.92181 0.90808 0.90023 0.91140 0.89539 0.93396 0.94642 0.95111 0.93857 0.98499 0.93746 0.83868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.44 36.01 0.38 -0.02 16 2 C 0.09 0.82 7.29 -13.85 -0.10 0.72 16 3 N -0.47 -5.38 10.56 -8.97 -0.09 -5.48 16 4 C 0.10 1.20 7.00 -84.88 -0.59 0.61 16 5 C -0.07 -0.76 10.03 -39.33 -0.39 -1.15 16 6 C -0.09 -0.96 7.42 -39.74 -0.29 -1.25 16 7 C -0.11 -1.45 5.49 -105.00 -0.58 -2.03 16 8 C 0.55 9.20 7.48 -12.45 -0.09 9.10 16 9 O -0.52 -11.05 16.23 5.28 0.09 -10.97 16 10 N -0.60 -9.30 2.87 -182.78 -0.53 -9.82 16 11 C 0.06 0.65 8.70 59.85 0.52 1.17 16 12 C 0.09 1.81 5.72 -4.04 -0.02 1.79 16 13 C 0.14 3.06 6.03 -4.04 -0.02 3.04 16 14 N -0.60 -15.41 2.92 -181.12 -0.53 -15.94 16 15 C 0.16 4.00 9.01 59.85 0.54 4.54 16 16 C -0.25 -7.17 9.66 -15.06 -0.15 -7.31 16 17 H 0.07 1.98 7.85 -52.48 -0.41 1.56 16 18 C 0.00 0.04 5.13 -17.43 -0.09 -0.05 16 19 N -0.91 -26.83 10.65 55.49 0.59 -26.23 16 20 Si 0.91 22.64 29.57 -169.99 -5.03 17.61 16 21 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 24 C -0.01 -0.12 9.61 -38.98 -0.37 -0.49 16 25 C -0.19 -2.34 6.54 -38.61 -0.25 -2.59 16 26 S 0.11 1.04 23.11 -107.50 -2.48 -1.45 16 27 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.09 0.26 8.14 -51.94 -0.42 -0.17 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.16 1.27 4.43 -52.48 -0.23 1.04 16 32 H 0.06 0.49 7.13 -51.93 -0.37 0.12 16 33 H 0.07 0.73 8.12 -51.92 -0.42 0.30 16 34 H 0.08 0.71 5.10 -51.93 -0.26 0.45 16 35 H 0.07 1.30 8.07 -51.93 -0.42 0.89 16 36 H 0.09 1.99 7.50 -51.93 -0.39 1.60 16 37 H 0.05 1.09 8.03 -51.93 -0.42 0.68 16 38 H 0.04 0.67 7.86 -51.93 -0.41 0.27 16 39 H 0.03 0.80 7.34 -51.93 -0.38 0.42 16 40 H 0.04 1.15 7.33 -51.93 -0.38 0.76 16 41 H 0.00 -0.07 7.84 -51.93 -0.41 -0.48 16 42 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.14 1.89 7.84 -52.49 -0.41 1.48 16 LS Contribution 368.01 15.07 5.55 5.55 Total: -1.00 -34.67 368.01 -9.70 -44.37 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -5.74 Total: -3.71 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: -1.53 Total: 6.06 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: -0.56 Total: -57.47 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.03 Total: 17.61 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.48 Total: -1.45 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.67 -9.70 -44.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667647762.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.861 kcal (2) G-P(sol) polarization free energy of solvation -34.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.78 seconds