Wall clock time and date at job start Tue Mar 31 2020 16:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.28050 * 124.24288 * 2 1 4 4 C 1.34415 * 117.91902 * 179.97438 * 3 2 1 5 5 C 1.41241 * 129.48761 * 179.97438 * 4 3 2 6 6 C 1.35755 * 120.63415 * 180.02562 * 5 4 3 7 7 C 1.40187 * 120.61847 * 359.97438 * 6 5 4 8 8 C 1.47587 * 120.12770 * 179.97438 * 7 6 5 9 9 O 1.21593 * 120.00148 * 155.38803 * 8 7 6 10 10 N 1.34780 * 120.00162 * 335.10708 * 8 7 6 11 11 C 1.46507 * 119.99394 * 355.12269 * 10 8 7 12 12 C 1.46494 * 120.00481 * 175.12035 * 10 8 7 13 13 C 1.53002 * 109.47115 * 90.00081 * 12 10 8 14 14 N 1.46504 * 109.46738 * 180.02562 * 13 12 10 15 15 C 1.46500 * 119.99943 * 269.99716 * 14 13 12 16 16 C 1.36938 * 119.99909 * 90.00505 * 14 13 12 17 17 H 1.08003 * 120.00279 * 23.58595 * 16 14 13 18 18 C 1.38813 * 119.99759 * 203.59558 * 16 14 13 19 19 N 1.31621 * 120.00206 * 11.26366 * 18 16 14 20 20 Si 1.86802 * 120.00058 * 191.27079 * 18 16 14 21 21 H 1.48498 * 109.47304 * 59.99163 * 20 18 16 22 22 H 1.48496 * 109.47167 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46834 * 299.99676 * 20 18 16 24 24 C 1.39186 * 119.74856 * 0.25288 * 7 6 5 25 25 C 1.38915 * 119.84010 * 359.49946 * 24 7 6 26 26 S 1.70639 * 124.23780 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47083 * 90.02172 * 1 2 3 28 28 H 1.08989 * 109.47463 * 210.02733 * 1 2 3 29 29 H 1.09006 * 109.46866 * 330.03281 * 1 2 3 30 30 H 1.08002 * 119.68176 * 359.97438 * 5 4 3 31 31 H 1.08003 * 119.68910 * 179.97438 * 6 5 4 32 32 H 1.08998 * 109.47251 * 95.76592 * 11 10 8 33 33 H 1.09010 * 109.46687 * 215.76468 * 11 10 8 34 34 H 1.08995 * 109.46912 * 335.76017 * 11 10 8 35 35 H 1.09000 * 109.47162 * 210.00096 * 12 10 8 36 36 H 1.09000 * 109.46833 * 330.00020 * 12 10 8 37 37 H 1.09000 * 109.47117 * 300.00042 * 13 12 10 38 38 H 1.08991 * 109.47070 * 60.00242 * 13 12 10 39 39 H 1.09001 * 109.46714 * 95.05229 * 15 14 13 40 40 H 1.09002 * 109.46930 * 215.05398 * 15 14 13 41 41 H 1.09000 * 109.47116 * 335.05581 * 15 14 13 42 42 H 0.97001 * 120.00462 * 180.02562 * 19 18 16 43 43 H 1.07999 * 120.07499 * 179.74193 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2276 1.0585 0.0000 4 6 3.5635 0.9105 0.0005 5 6 4.5763 1.8950 0.0002 6 6 5.8865 1.5395 0.0003 7 6 6.2597 0.1883 0.0014 8 6 7.6874 -0.1859 0.0009 9 8 8.0330 -1.2657 0.4403 10 7 8.6075 0.6670 -0.4917 11 6 8.1820 1.9184 -1.1235 12 6 10.0328 0.3427 -0.3952 13 6 10.4636 -0.4374 -1.6390 14 7 11.8889 -0.7622 -1.5422 15 6 12.8894 0.1646 -2.0773 16 6 12.2860 -1.9322 -0.9516 17 1 11.6062 -2.7700 -0.9022 18 6 13.5621 -2.0412 -0.4165 19 7 14.3103 -0.9677 -0.2745 20 14 14.2179 -3.7118 0.1021 21 1 14.2424 -4.6202 -1.0723 22 1 15.5943 -3.5587 0.6378 23 1 13.3382 -4.2845 1.1525 24 6 5.2788 -0.7992 -0.0031 25 6 3.9368 -0.4404 0.0020 26 16 2.4671 -1.4107 0.0006 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3634 -0.8896 0.5142 29 1 -0.3633 0.8903 0.5134 30 1 4.3058 2.9405 -0.0011 31 1 6.6484 2.3050 -0.0004 32 1 8.2216 2.7262 -0.3927 33 1 8.8464 2.1491 -1.9564 34 1 7.1617 1.8110 -1.4916 35 1 10.6111 1.2640 -0.3258 36 1 10.2080 -0.2642 0.4931 37 1 9.8853 -1.3587 -1.7084 38 1 10.2884 0.1695 -2.5272 39 1 13.2498 0.8116 -1.2775 40 1 13.7242 -0.4011 -2.4911 41 1 12.4385 0.7729 -2.8614 42 1 15.2022 -1.0439 0.0992 43 1 5.5604 -1.8418 -0.0065 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667647762.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:51 Heat of formation + Delta-G solvation = 49.532842 kcal Electronic energy + Delta-G solvation = -25405.605346 eV Core-core repulsion = 21771.363866 eV Total energy + Delta-G solvation = -3634.241479 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 4.12 seconds Orbital eigenvalues (eV) -41.91659 -40.75549 -38.09947 -37.73178 -36.55060 -33.64001 -32.71575 -32.36728 -30.64025 -29.13732 -27.93274 -27.83548 -25.67853 -25.11641 -23.82033 -22.44712 -22.08763 -20.85922 -19.39524 -18.86150 -18.55496 -17.58739 -17.02749 -16.69112 -16.63259 -16.23696 -16.06348 -15.77689 -15.35114 -15.09296 -14.95646 -14.45132 -14.42800 -14.32760 -14.00302 -13.96405 -13.89302 -13.64016 -13.21020 -13.13957 -12.80400 -12.78490 -12.69623 -12.46773 -12.29778 -12.09512 -12.03327 -11.88450 -11.61591 -11.27090 -11.04037 -10.77420 -10.69655 -9.88321 -9.71065 -9.24556 -8.77133 -7.86576 -5.35526 -0.97378 -0.01069 0.08935 0.58377 0.86082 1.42674 1.44879 1.51631 1.78811 1.94035 2.49290 2.57963 2.79934 3.26920 3.34335 3.45992 3.75866 3.85148 3.97277 4.04812 4.09755 4.22882 4.37491 4.43525 4.57317 4.60822 4.65695 4.67348 4.69561 4.83637 4.84808 4.90653 4.93911 5.00294 5.09774 5.14287 5.16131 5.32735 5.43116 5.53607 5.62335 5.72670 6.30281 6.35825 6.46606 7.06151 7.13654 7.83462 8.24589 9.15729 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.023563 B = 0.002358 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.037380 B =11869.585746 C =12747.247186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.101 3.899 3 N -0.497 5.497 4 C 0.094 3.906 5 C -0.071 4.071 6 C -0.080 4.080 7 C -0.125 4.125 8 C 0.546 3.454 9 O -0.583 6.583 10 N -0.600 5.600 11 C 0.053 3.947 12 C 0.113 3.887 13 C 0.147 3.853 14 N -0.616 5.616 15 C 0.176 3.824 16 C -0.265 4.265 17 H 0.055 0.945 18 C -0.048 4.048 19 N -0.932 5.932 20 Si 0.965 3.035 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.283 1.283 24 C -0.019 4.019 25 C -0.220 4.220 26 S 0.128 5.872 27 H 0.110 0.890 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.170 0.830 31 H 0.186 0.814 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.039 0.961 37 H 0.023 0.977 38 H 0.068 0.932 39 H 0.011 0.989 40 H 0.015 0.985 41 H 0.038 0.962 42 H 0.250 0.750 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.212 9.485 -2.035 30.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.182 4.182 3 N -0.212 5.212 4 C -0.028 4.028 5 C -0.091 4.091 6 C -0.101 4.101 7 C -0.131 4.131 8 C 0.336 3.664 9 O -0.464 6.464 10 N -0.332 5.332 11 C -0.088 4.088 12 C -0.012 4.012 13 C 0.020 3.980 14 N -0.339 5.339 15 C 0.032 3.968 16 C -0.395 4.395 17 H 0.073 0.927 18 C -0.243 4.243 19 N -0.579 5.579 20 Si 0.793 3.207 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.210 1.210 24 C -0.042 4.042 25 C -0.338 4.338 26 S 0.385 5.615 27 H 0.128 0.872 28 H 0.125 0.875 29 H 0.119 0.881 30 H 0.187 0.813 31 H 0.203 0.797 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.119 0.881 35 H 0.102 0.898 36 H 0.058 0.942 37 H 0.042 0.958 38 H 0.086 0.914 39 H 0.029 0.971 40 H 0.034 0.966 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -29.408 8.403 -1.790 30.637 hybrid contribution 1.646 -0.591 0.579 1.842 sum -27.762 7.812 -1.211 28.865 Atomic orbital electron populations 1.20839 0.81617 1.06077 1.05951 1.27646 1.03568 0.90282 0.96719 1.66261 1.03864 1.32095 1.19007 1.19765 0.89977 0.91965 1.01071 1.20633 0.89462 0.99691 0.99334 1.21823 0.97475 0.94928 0.95831 1.19720 0.91305 0.95309 1.06802 1.18659 0.86301 0.83668 0.77773 1.90815 1.82193 1.24201 1.49210 1.47909 1.05961 1.21756 1.57538 1.22789 1.02878 0.84107 0.99017 1.22065 0.78844 1.00108 1.00181 1.21146 0.84157 0.96839 0.95859 1.44138 1.01206 1.21091 1.67512 1.20621 0.90377 0.91443 0.94392 1.19347 0.98469 0.90581 1.31134 0.92699 1.25742 0.98714 1.00402 0.99441 1.70177 1.10323 1.27928 1.49424 0.85382 0.77096 0.80067 0.78152 1.20309 1.21171 1.20951 1.20346 0.89065 0.99878 0.94874 1.23863 0.98981 0.97921 1.13081 1.83975 0.94135 1.10048 1.73361 0.87165 0.87509 0.88102 0.81297 0.79699 0.89016 0.89642 0.88068 0.89761 0.94193 0.95804 0.91369 0.97059 0.96600 0.94396 0.94043 0.85471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.44 71.24 0.74 0.20 16 2 C 0.10 1.60 7.29 88.66 0.65 2.24 16 3 N -0.50 -10.26 10.56 -182.21 -1.92 -12.18 16 4 C 0.09 2.07 7.00 39.95 0.28 2.35 16 5 C -0.07 -1.23 10.03 22.43 0.23 -1.01 16 6 C -0.08 -1.45 7.42 22.17 0.16 -1.29 16 7 C -0.12 -3.30 5.49 -20.11 -0.11 -3.41 16 8 C 0.55 18.81 7.48 86.71 0.65 19.46 16 9 O -0.58 -26.45 16.23 -4.01 -0.07 -26.52 16 10 N -0.60 -18.12 2.87 -850.46 -2.44 -20.57 16 11 C 0.05 0.91 8.70 127.77 1.11 2.02 16 12 C 0.11 4.42 5.72 86.38 0.49 4.91 16 13 C 0.15 6.33 6.03 86.38 0.52 6.85 16 14 N -0.62 -32.19 2.92 -726.92 -2.12 -34.31 16 15 C 0.18 8.64 9.01 127.77 1.15 9.80 16 16 C -0.26 -15.58 9.66 84.03 0.81 -14.76 16 17 H 0.06 3.31 7.85 -2.91 -0.02 3.28 16 18 C -0.05 -2.78 5.13 84.86 0.44 -2.34 16 19 N -0.93 -55.98 10.65 21.65 0.23 -55.75 16 20 Si 0.97 47.54 29.57 68.60 2.03 49.56 16 21 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 22 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 23 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 24 C -0.02 -0.50 9.61 22.66 0.22 -0.28 16 25 C -0.22 -5.21 6.54 22.90 0.15 -5.06 16 26 S 0.13 2.26 23.11 -56.49 -1.31 0.96 16 27 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16 31 H 0.19 2.25 4.43 -2.91 -0.01 2.24 16 32 H 0.09 1.08 7.13 -2.39 -0.02 1.06 16 33 H 0.08 1.34 8.12 -2.38 -0.02 1.33 16 34 H 0.10 1.41 5.10 -2.39 -0.01 1.40 16 35 H 0.08 3.05 8.07 -2.39 -0.02 3.03 16 36 H 0.04 1.93 7.50 -2.39 -0.02 1.91 16 37 H 0.02 1.12 8.03 -2.39 -0.02 1.10 16 38 H 0.07 2.47 7.86 -2.39 -0.02 2.45 16 39 H 0.01 0.59 7.34 -2.39 -0.02 0.57 16 40 H 0.02 0.83 7.33 -2.39 -0.02 0.81 16 41 H 0.04 1.52 7.84 -2.39 -0.02 1.50 16 42 H 0.25 14.57 8.31 -92.71 -0.77 13.79 16 43 H 0.13 3.71 7.84 -2.91 -0.02 3.68 16 Total: -1.00 -79.59 368.01 2.92 -76.68 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: 1.03 Total: 2.44 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: 7.49 Total: 19.68 kcal Atomic # 7 Polarization: -116.54 SS G_CDS: -6.26 Total: -122.80 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.07 Total: -26.52 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.56 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -1.31 Total: 0.96 kcal Total: -79.59 2.92 -76.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667647762.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.208 kcal (2) G-P(sol) polarization free energy of solvation -79.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.12 seconds