Wall clock time and date at job start Tue Mar 31 2020 16:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47307 * 59.04681 * 3 2 1 5 5 C 1.34777 * 120.00021 * 277.54879 * 4 3 2 6 6 O 1.21690 * 120.00066 * 177.64412 * 5 4 3 7 7 C 1.46689 * 120.00063 * 357.64114 * 5 4 3 8 8 S 1.76214 * 126.12757 * 7.86602 * 7 5 4 9 9 C 1.70956 * 90.31061 * 179.97438 * 8 7 5 10 10 N 1.29427 * 110.39110 * 0.34789 * 9 8 7 11 11 C 1.30947 * 117.36539 * 359.72827 * 10 9 8 12 12 C 1.50702 * 122.90503 * 180.02562 * 11 10 9 13 13 C 1.46493 * 119.99824 * 97.54482 * 4 3 2 14 14 C 1.53039 * 109.46233 * 60.07195 * 13 4 3 15 15 C 1.53192 * 109.31545 * 178.61689 * 14 13 4 16 16 N 1.46921 * 108.77821 * 54.63251 * 15 14 13 17 17 C 1.36934 * 120.63313 * 126.41926 * 16 15 14 18 18 H 1.07998 * 119.99616 * 324.58185 * 17 16 15 19 19 C 1.38803 * 120.00402 * 144.58386 * 17 16 15 20 20 N 1.31624 * 120.00157 * 4.11815 * 19 17 16 21 21 Si 1.86806 * 120.00333 * 184.12138 * 19 17 16 22 22 H 1.48503 * 109.46731 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47395 * 119.99674 * 21 19 17 24 24 H 1.48498 * 109.47056 * 239.99942 * 21 19 17 25 25 C 1.46930 * 118.73559 * 306.39078 * 16 15 14 26 26 C 1.53041 * 109.46375 * 300.00255 * 13 4 3 27 27 H 4.40644 * 5.51407 * 180.02562 * 4 1 2 28 28 H 1.09003 * 109.46998 * 299.04944 * 3 2 1 29 29 H 1.08998 * 109.47085 * 179.04861 * 3 2 1 30 30 H 1.07998 * 124.80504 * 180.10105 * 9 8 7 31 31 H 1.09009 * 109.46538 * 269.99141 * 12 11 10 32 32 H 1.08998 * 109.47444 * 29.98629 * 12 11 10 33 33 H 1.08999 * 109.46940 * 149.99659 * 12 11 10 34 34 H 1.09004 * 109.45082 * 180.02562 * 13 4 3 35 35 H 1.09003 * 109.49382 * 298.56506 * 14 13 4 36 36 H 1.08998 * 109.49819 * 58.65911 * 14 13 4 37 37 H 1.09000 * 109.58262 * 294.84409 * 15 14 13 38 38 H 1.09003 * 109.70494 * 174.49483 * 15 14 13 39 39 H 0.96994 * 120.00260 * 180.02562 * 20 19 17 40 40 H 1.08993 * 109.59188 * 293.82076 * 25 16 15 41 41 H 1.09010 * 109.70058 * 173.46448 * 25 16 15 42 42 H 1.09001 * 109.49641 * 301.33972 * 26 13 4 43 43 H 1.08992 * 109.49818 * 61.39774 * 26 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7095 -1.1845 5 6 3.2154 -2.0549 -1.1781 6 8 3.5806 -2.6473 -2.1764 7 6 2.8632 -2.8050 0.0323 8 16 2.1360 -2.1388 1.4926 9 6 2.1382 -3.6896 2.2123 10 7 2.6461 -4.5619 1.4022 11 6 3.0453 -4.1346 0.2306 12 6 3.6538 -5.0415 -0.8078 13 6 3.5356 0.0426 -2.3760 14 6 4.6804 0.9931 -2.0178 15 6 5.1200 1.7527 -3.2733 16 7 3.9472 2.4150 -3.8603 17 6 3.9636 3.7586 -4.1237 18 1 4.4903 4.4318 -3.4635 19 6 3.3034 4.2555 -5.2390 20 7 2.5943 3.4474 -5.9983 21 14 3.4213 6.0711 -5.6625 22 1 4.2720 6.7593 -4.6585 23 1 4.0223 6.2268 -7.0114 24 1 2.0627 6.6706 -5.6537 25 6 2.7565 1.6079 -4.1600 26 6 2.3434 0.8500 -2.8944 27 1 -1.0498 0.0000 -0.0003 28 1 3.0096 -0.4982 0.8984 29 1 3.0089 1.0283 -0.0171 30 1 1.7716 -3.9094 3.2040 31 1 4.7349 -5.0749 -0.6723 32 1 3.2429 -6.0452 -0.6994 33 1 3.4240 -4.6602 -1.8028 34 1 3.8680 -0.6510 -3.1483 35 1 4.3412 1.7028 -1.2632 36 1 5.5206 0.4194 -1.6267 37 1 5.5435 1.0532 -3.9940 38 1 5.8671 2.5006 -3.0076 39 1 2.1332 3.7945 -6.7778 40 1 2.9872 0.8966 -4.9530 41 1 1.9420 2.2587 -4.4784 42 1 1.5202 0.1745 -3.1274 43 1 2.0258 1.5606 -2.1315 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671461160.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:40 Heat of formation + Delta-G solvation = 103.130307 kcal Electronic energy + Delta-G solvation = -26760.103465 eV Core-core repulsion = 23128.186146 eV Total energy + Delta-G solvation = -3631.917319 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 3.27 seconds Orbital eigenvalues (eV) -40.58101 -39.60037 -37.41636 -35.82662 -33.35549 -32.22546 -31.90762 -30.34217 -29.70478 -28.30261 -27.36928 -25.28979 -24.91792 -22.68209 -22.19440 -20.85602 -19.52445 -18.99202 -18.66360 -17.99050 -16.97572 -16.49233 -16.32582 -15.68071 -15.14523 -14.85084 -14.62618 -14.25985 -13.94503 -13.77310 -13.71466 -13.46819 -13.24514 -13.04375 -12.65486 -12.61389 -12.42982 -12.29142 -11.56746 -11.46589 -11.17331 -10.92521 -10.83683 -10.68532 -10.58378 -10.31546 -10.20236 -10.07895 -9.99370 -9.85495 -9.69737 -9.59018 -9.48271 -8.96996 -8.61265 -8.43891 -6.60158 -5.81700 -3.35367 0.09890 1.04860 1.42336 2.29109 2.39219 2.74825 3.08935 3.27171 3.34514 3.42075 3.43540 3.98084 4.19482 4.44772 4.46623 4.86218 4.88831 4.96717 5.17310 5.30875 5.39580 5.48808 5.56643 5.58149 5.66926 5.75667 5.77737 5.81764 6.04081 6.13343 6.23124 6.29873 6.44775 6.53625 6.62337 6.75720 6.81047 6.91899 7.28071 7.40509 7.47110 7.50104 7.75430 7.78068 8.07146 8.49554 9.21079 9.79580 10.39254 11.24382 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.023341 B = 0.003135 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.303579 B = 8928.466341 C = 9449.835828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.212 4.212 3 C 0.208 3.792 4 N -0.595 5.595 5 C 0.596 3.404 6 O -0.519 6.519 7 C -0.298 4.298 8 S 0.201 5.799 9 C -0.005 4.005 10 N -0.480 5.480 11 C 0.143 3.857 12 C -0.093 4.093 13 C 0.147 3.853 14 C -0.141 4.141 15 C 0.149 3.851 16 N -0.594 5.594 17 C -0.255 4.255 18 H 0.065 0.935 19 C 0.010 3.990 20 N -0.903 5.903 21 Si 0.903 3.097 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.290 1.290 25 C 0.170 3.830 26 C -0.143 4.143 27 H 0.219 0.781 28 H 0.095 0.905 29 H 0.123 0.877 30 H 0.198 0.802 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.021 0.979 38 H 0.058 0.942 39 H 0.255 0.745 40 H 0.017 0.983 41 H 0.104 0.896 42 H 0.049 0.951 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.180 -11.224 17.300 20.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.215 4.215 3 C 0.084 3.916 4 N -0.325 5.325 5 C 0.384 3.616 6 O -0.397 6.397 7 C -0.422 4.422 8 S 0.459 5.541 9 C -0.299 4.299 10 N -0.194 5.194 11 C 0.005 3.995 12 C -0.152 4.152 13 C 0.046 3.954 14 C -0.181 4.181 15 C 0.021 3.979 16 N -0.317 5.317 17 C -0.384 4.384 18 H 0.082 0.918 19 C -0.189 4.189 20 N -0.547 5.547 21 Si 0.732 3.268 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.217 1.217 25 C 0.044 3.956 26 C -0.184 4.184 27 H 0.236 0.764 28 H 0.112 0.888 29 H 0.140 0.860 30 H 0.214 0.786 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.039 0.961 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.036 0.964 41 H 0.122 0.878 42 H 0.068 0.932 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.352 -11.059 17.193 20.578 hybrid contribution -0.045 0.369 -0.493 0.617 sum -2.397 -10.690 16.700 19.973 Atomic orbital electron populations 1.24890 0.95771 0.99323 0.98333 1.23153 0.94648 1.01637 1.02025 1.18587 0.84624 1.00358 0.88064 1.48173 1.63542 1.05091 1.15739 1.16783 0.77502 0.81649 0.85700 1.90773 1.47632 1.67865 1.33426 1.25575 1.16792 0.98831 1.01016 1.84652 1.54299 1.09294 1.05870 1.29157 1.00769 0.95658 1.04336 1.66228 1.13379 1.36851 1.02926 1.20720 0.95467 0.90934 0.92383 1.20705 1.00266 0.97323 0.96869 1.21368 0.95857 0.93111 0.85095 1.22435 0.96821 0.97925 1.00885 1.20876 0.90684 0.94784 0.91523 1.44042 1.09123 1.05252 1.73261 1.19181 1.32012 0.82793 1.04464 0.91765 1.25332 0.99781 0.98023 0.95784 1.69889 1.33851 1.33836 1.17120 0.86217 0.77439 0.84901 0.78214 1.20221 1.21470 1.21683 1.20967 0.91755 0.93086 0.89812 1.22604 0.95751 0.98304 1.01714 0.76418 0.88843 0.85951 0.78556 0.90244 0.90832 0.87812 0.88117 0.92101 0.92660 0.96077 0.92312 0.93492 0.96438 0.87833 0.93229 0.92485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 19.25 29.55 0.57 -1.24 16 2 C -0.21 -2.59 10.24 -37.12 -0.38 -2.97 16 3 C 0.21 2.51 4.73 -6.83 -0.03 2.48 16 4 N -0.59 -8.89 2.36 -170.90 -0.40 -9.29 16 5 C 0.60 9.43 7.54 -12.85 -0.10 9.33 16 6 O -0.52 -9.53 13.59 5.20 0.07 -9.46 16 7 C -0.30 -4.01 6.23 -37.09 -0.23 -4.24 16 8 S 0.20 1.95 16.52 -107.50 -1.78 0.17 16 9 C -0.01 -0.05 12.22 51.75 0.63 0.58 16 10 N -0.48 -5.93 10.50 -11.53 -0.12 -6.05 16 11 C 0.14 1.90 6.79 -83.89 -0.57 1.33 16 12 C -0.09 -1.13 9.80 36.01 0.35 -0.78 16 13 C 0.15 2.54 2.47 -67.89 -0.17 2.38 16 14 C -0.14 -2.34 5.33 -26.61 -0.14 -2.49 16 15 C 0.15 3.01 6.52 -3.71 -0.02 2.99 16 16 N -0.59 -14.46 3.00 -172.32 -0.52 -14.98 16 17 C -0.25 -6.78 9.55 -15.06 -0.14 -6.93 16 18 H 0.06 1.68 7.83 -52.49 -0.41 1.27 16 19 C 0.01 0.26 5.32 -17.43 -0.09 0.17 16 20 N -0.90 -25.61 10.62 55.49 0.59 -25.02 16 21 Si 0.90 21.20 29.56 -169.99 -5.02 16.17 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 25 C 0.17 4.02 5.26 -3.71 -0.02 4.00 16 26 C -0.14 -2.76 4.93 -26.61 -0.13 -2.89 16 27 H 0.22 1.67 7.80 -54.10 -0.42 1.24 16 28 H 0.09 0.95 4.48 -22.68 -0.10 0.85 16 29 H 0.12 1.42 6.47 -51.93 -0.34 1.09 16 30 H 0.20 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.10 1.43 5.85 -51.93 -0.30 1.13 16 34 H 0.10 1.97 6.90 -51.93 -0.36 1.61 16 35 H 0.06 0.98 6.73 -51.93 -0.35 0.63 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 39 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.10 2.76 5.92 -51.92 -0.31 2.45 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.06 1.09 7.38 -51.93 -0.38 0.71 16 LS Contribution 356.17 15.07 5.37 5.37 Total: -1.00 -31.57 356.17 -7.77 -39.34 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.48 Total: 2.01 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -0.48 Total: 1.74 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: -0.45 Total: -55.34 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.07 Total: -9.46 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -1.78 Total: 0.17 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.57 -7.77 -39.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671461160.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.472 kcal (2) G-P(sol) polarization free energy of solvation -31.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.27 seconds